Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006908.1

Orthogroup ID

OG0003727

Physical Location & Seq

Genomic Coordinates Forward (+)

96548 .. 96817

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006908.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atggaaagcagagaggtgaatagcgcgagcagcttccagatgccccttcactaccctaggtacaccagaaaggactaccaggacatgcccgagtggaagctcgaccgccttcttgccgattatgggttgccggctcacggtgacttggcttacaagagagaatttgccatgggcgcctttctctggcctgatcattgtcgccatggtcccaatcaaaaccattgtaattcatacaataaccctagcattaaggcgggtgcttccaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

10.32

Weight (kDa)

6.95

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09950
fragaria_vesca	FvH4_3g00510 FvH4_7g23090 FvH4_7g23130
prunus_persica	Prupe.2G240100_v2.0.a1 Prupe.2G240200_v2.0.a1 Prupe.4G006200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0367441 RchiOBHm_Chr1g0368351 RchiOBHm_Chr1g0368481 RchiOBHm_Chr5g0000691
rosa_laevigata	RLG00000027217 RLG00000030888
rosa_multiflora	Rmu_sc0000255.1_g000001 Rmu_sc0002709.1_g000046 Rmu_sc0006908.1_g000023 Rmu_sc0011992.1_g000008
rosa_roxburghii	Rroxscaffold_1G00075520 Rroxscaffold_4G00288510 Rroxscaffold_4G00288620
rosa_rugosa	Rorug01G0342000 Rorug04G0386100
rosa_samantha	Rh1AG348000 Rh1BG311000 Rh1BG312500 Rh1DG342800 Rh1DG344000 Rh5BG007500 Rh5CG006300 Rh5DG006200
rosa_wichuraiana	Rw0G002400 Rw1G030980 Rw1G031100 Rw5G000590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	106, 254
AcsI	RAATTY	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	123, 137, 183
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	33, 100
AluI	AGCT	2 cut(s)	33, 100
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	26, 176
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	28, 152
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	206
AvrII	CCTAGG	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	190
BfaI	CTAG	2 cut(s)	57, 243
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	1 cut(s)	31
BlnI	CCTAGG	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	2 cut(s)	175, 208
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	56, 168, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 137, 183
Bse118I	RCCGGY	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	56, 168, 202
BseLI	CCNNNNNNNGG	3 cut(s)	123, 137, 183
BseXI	GCAGC	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	123, 137, 183
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	2 cut(s)	168, 202
BspACI	CCGC	2 cut(s)	106, 254
BspANI	GGCC	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	175, 208
BspT107I	GGYRCC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	3 cut(s)	56, 168, 202
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	3 cut(s)	56, 168, 202
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	28, 132
BstDSI	CCRYGG	2 cut(s)	168, 202
BstFNI	CGCG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	26, 176
BstKTI	GATC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 173
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	78
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	2 cut(s)	168, 202
Cac8I	GCNNGC	2 cut(s)	28, 132
CfoI	GCGC	2 cut(s)	26, 176
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	85, 169, 203
CviJI	RGCY	5 cut(s)	33, 100, 134, 149, 187
CviKI_1	RGCY	5 cut(s)	33, 100, 134, 149, 187
CviQI	GTAC	1 cut(s)	61
DinI	GGCGCC	1 cut(s)	175
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco130I	CCWWGG	3 cut(s)	56, 168, 202
Eco47I	GGWCC	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	3 cut(s)	56, 168, 202
EgeI	GGCGCC	1 cut(s)	175
EheI	GGCGCC	1 cut(s)	175
ErhI	CCWWGG	3 cut(s)	56, 168, 202
FaeI	CATG	3 cut(s)	88, 172, 206
FaiI	YATR	5 cut(s)	86, 123, 170, 204, 232
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	3 cut(s)	84, 168, 202
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	31
FspBI	CTAG	2 cut(s)	57, 243
GlaI	GCGC	2 cut(s)	25, 175
GluI	GCNGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	2 cut(s)	26, 176
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	88, 172, 206
Hin6I	GCGC	2 cut(s)	24, 174
HinP1I	GCGC	2 cut(s)	24, 174
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	2 cut(s)	28, 152
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	56, 119
HpyCH4III	ACNGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 173
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	88, 172, 206
HspAI	GCGC	2 cut(s)	24, 174
KasI	GGCGCC	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	50, 65, 79, 92, 144, 169, 201
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	2 cut(s)	57, 243
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MluCI	AATT	3 cut(s)	161, 226, 265
Mly113I	GGCGCC	1 cut(s)	174
MnlI	CCTC	1 cut(s)	7
MroNI	GCCGGC	1 cut(s)	130
MseI	TTAA	2 cut(s)	249, 268
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	30, 173
NaeI	GCCGGC	1 cut(s)	132
NarI	GGCGCC	1 cut(s)	174
NcoI	CCATGG	2 cut(s)	168, 202
NdeII	GATC	1 cut(s)	190
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	88, 172, 206
NlaIV	GGNNCC	2 cut(s)	175, 208
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	88
PdiI	GCCGGC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	32
PluTI	GGCGCC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	175, 208
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	249, 268
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	4 cut(s)	18, 35, 62, 102
SfaNI	GCATC	1 cut(s)	30
SfoI	GGCGCC	1 cut(s)	175
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	3 cut(s)	161, 226, 265
SsiI	CCGC	2 cut(s)	106, 254
SspDI	GGCGCC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	57, 243
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	3 cut(s)	56, 168, 202
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	161, 226, 265
Tru1I	TTAA	2 cut(s)	249, 268
Tru9I	TTAA	2 cut(s)	249, 268
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	56
XspI	CTAG	2 cut(s)	57, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.