Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003727

Physical Location & Seq

Genomic Coordinates Reverse (-)

339663 .. 340476

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G006200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGCAACCTTAACCCTAGTAATAATATTGAAGGAGATCATCATCCTTCAGGCTCAGGCTCAGACTTAGGAGGAGGTCATGTGATGAAGAAGGTGGTTTCTAATTACTCCAATAAGAGTGCAGAAATAATGCATCCTTCAGGTTCAGGCTCAGGAGGATTTCAGATGCCCCTTCATTACCCTCGCTACACAAAGGCGGACTATGAGAAGATGGAGGAGTGGAAGGTGGACCTGCTCCTCGAGCAATACGGGCTTGCTTTCCAAGGGACCCTTGAACAAAAGAGGGCATATGCAATCGGAGCATTCTTGTGGCCTGATCAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.97

Weight (kDa)

5.89

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09950
fragaria_vesca	FvH4_3g00510 FvH4_7g23090 FvH4_7g23130
prunus_persica	Prupe.2G240100_v2.0.a1 Prupe.2G240200_v2.0.a1 Prupe.4G006200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0367441 RchiOBHm_Chr1g0368351 RchiOBHm_Chr1g0368481 RchiOBHm_Chr5g0000691
rosa_laevigata	RLG00000027217 RLG00000030888
rosa_multiflora	Rmu_sc0000255.1_g000001 Rmu_sc0002709.1_g000046 Rmu_sc0006908.1_g000023 Rmu_sc0011992.1_g000008
rosa_roxburghii	Rroxscaffold_1G00075520 Rroxscaffold_4G00288510 Rroxscaffold_4G00288620
rosa_rugosa	Rorug01G0342000 Rorug04G0386100
rosa_samantha	Rh1AG348000 Rh1BG311000 Rh1BG312500 Rh1DG342800 Rh1DG344000 Rh5BG007500 Rh5CG006300 Rh5DG006200
rosa_wichuraiana	Rw0G002400 Rw1G030980 Rw1G031100 Rw5G000590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AciI	CCGC	1 cut(s)	197
AcuI	CTGAAG	2 cut(s)	33, 123
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	32, 275
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	229, 267
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	229, 267
BccI	CCATC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	316
BfaI	CTAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	240
BmcAI	AGTACT	1 cut(s)	323
Bme18I	GGWCC	2 cut(s)	229, 267
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	229, 267
BmiI	GGNNCC	2 cut(s)	268, 269
BmsI	GCATC	2 cut(s)	142, 156
Bpu10I	CCTNAGC	2 cut(s)	55, 151
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse8I	GATNNNNATC	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	2 cut(s)	43, 133
BseJI	GATNNNNATC	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	69, 75, 165
BseRI	GAGGAG	3 cut(s)	87, 227, 230
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	37, 316
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	3 cut(s)	68, 74, 164
BspLI	GGNNCC	2 cut(s)	268, 269
BspMI	ACCTGC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	37, 316
BssT1I	CCWWGG	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	55, 61, 67, 151
BstF5I	GGATG	2 cut(s)	43, 133
BstKTI	GATC	2 cut(s)	40, 319
BstMBI	GATC	2 cut(s)	37, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 250, 299
BsuRI	GGCC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	43, 133
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	229, 267
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	5 cut(s)	54, 60, 150, 253, 313
CviKI_1	RGCY	5 cut(s)	54, 60, 150, 253, 313
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	4 cut(s)	55, 61, 67, 151
DpnI	GATC	2 cut(s)	39, 318
DpnII	GATC	2 cut(s)	37, 316
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	229, 267
Eco57I	CTGAAG	2 cut(s)	33, 123
Eco88I	CYCGRG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	83
FaiI	YATR	4 cut(s)	81, 204, 289, 291
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	316
FokI	GGATG	2 cut(s)	30, 120
FspBI	CTAG	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	313
Hin1II	CATG	1 cut(s)	83
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	64, 165, 299
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	6 cut(s)	26, 57, 85, 147, 182, 217
HpyCH4V	TGCA	3 cut(s)	122, 133, 293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 250, 299
HpyF3I	CTNAG	4 cut(s)	55, 61, 67, 151
Hsp92II	CATG	1 cut(s)	83
KflI	GGGWCCC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	37, 316
LmnI	GCTCC	2 cut(s)	240, 299
LpnPI	CCDG	6 cut(s)	36, 42, 126, 132, 138, 245
LweI	GCATC	2 cut(s)	142, 156
MaeI	CTAG	1 cut(s)	18
MalI	GATC	2 cut(s)	39, 318
MboI	GATC	2 cut(s)	37, 316
MboII	GAAGA	2 cut(s)	100, 220
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	7 cut(s)	65, 68, 149, 192, 208, 248, 276
Mph1103I	ATGCAT	1 cut(s)	135
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	241, 250, 299
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	37, 316
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	268, 269
NsiI	ATGCAT	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	239
PctI	GAATGC	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	268, 269
PspPI	GGNCC	2 cut(s)	229, 267
PspPPI	RGGWCCY	1 cut(s)	267
PspXI	VCTCGAGB	1 cut(s)	239
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	2 cut(s)	37, 316
Sau96I	GGNCC	2 cut(s)	229, 267
ScaI	AGTACT	1 cut(s)	323
SetI	ASST	6 cut(s)	12, 79, 96, 145, 228, 234
SfaNI	GCATC	2 cut(s)	142, 156
Sfr274I	CTCGAG	1 cut(s)	239
SinI	GGWCC	2 cut(s)	229, 267
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	262
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	103
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TspDTI	ATGAA	2 cut(s)	101, 164
VpaK11BI	GGWCC	2 cut(s)	229, 267
XhoI	CTCGAG	1 cut(s)	239
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	323
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.