Rh1DG344000

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003727
Physical Location & Seq
Reverse (-)
56814965 .. 56815620
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG344000.1

Sequence Viewer

Length: 270 bp
ATGGAAAGCAGAAAGGTGAGTAGCGCGAGCAGCTTCCAGATGCCCCTTCACTACCCTAGGTACACCAGAAAGGACTACCAGGACATGCATGAGTGGAAGCTCGACCGCCTTCTTGCCGATTATGGGTTGCCGGCTCACGGTGACTTGGCTTACAAGAGAGAATTTGCAATGGGTGCCTTTCTCTGGCCTGATCATTGTCGCCATGGTCCCAATCCAAGCCATTGTAATTCATACAATAACCCTAGCATTAAGGCCGATGCTTCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.33

Weight (kDa)

7.85

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 18 - 63 2.7e-27 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 26
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 123, 137, 183
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 2 cut(s) 33, 100
AluI AGCT 2 cut(s) 33, 100
AoxI GGCC 2 cut(s) 185, 252
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 28, 152
AvaII GGWCC 1 cut(s) 206
AvrII CCTAGG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 190
BfaI CTAG 2 cut(s) 57, 243
BisI GCNGC 1 cut(s) 31
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 175, 208
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 30, 247
BsaJI CCNNGG 2 cut(s) 56, 202
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 137, 183
Bse118I RCCGGY 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 56, 202
BseLI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BseMI GCAATG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 26
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 187, 254
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 2 cut(s) 187, 254
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 187, 254
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 2 cut(s) 175, 208
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 56, 202
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 56, 202
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 28, 132
BstDSI CCRYGG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 26
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 30, 173
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 2 cut(s) 187, 254
BtgI CCRYGG 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 28, 132
CfoI GCGC 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 85, 89, 203
CviJI RGCY 7 cut(s) 33, 100, 134, 149, 187, 219, 254
CviKI_1 RGCY 7 cut(s) 33, 100, 134, 149, 187, 219, 254
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 56, 202
Eco47I GGWCC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 56, 202
EcoT22I ATGCAT 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 56, 202
FaeI CATG 3 cut(s) 88, 92, 206
FaiI YATR 5 cut(s) 86, 90, 123, 204, 232
FaqI GGGAC 1 cut(s) 192
FatI CATG 3 cut(s) 84, 88, 202
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 2 cut(s) 57, 243
GlaI GCGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 2 cut(s) 187, 254
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 26
Hin1II CATG 3 cut(s) 88, 92, 206
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 28, 152
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 56, 119
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 88, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 173
Hsp92II CATG 3 cut(s) 88, 92, 206
HspAI GCGC 1 cut(s) 24
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 7 cut(s) 50, 65, 79, 92, 144, 169, 201
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 2 cut(s) 30, 247
MaeI CTAG 2 cut(s) 57, 243
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MluCI AATT 3 cut(s) 161, 226, 265
Mph1103I ATGCAT 1 cut(s) 90
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 2 cut(s) 249, 268
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 30, 173
NaeI GCCGGC 1 cut(s) 132
NcoI CCATGG 1 cut(s) 202
NdeII GATC 1 cut(s) 190
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 3 cut(s) 88, 92, 206
NlaIV GGNNCC 2 cut(s) 175, 208
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 90
NspI RCATGY 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 132
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 175, 208
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 2 cut(s) 249, 268
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 80
SetI ASST 4 cut(s) 18, 35, 62, 102
SfaNI GCATC 2 cut(s) 30, 247
SinI GGWCC 1 cut(s) 206
Sse9I AATT 3 cut(s) 161, 226, 265
SsiI CCGC 1 cut(s) 106
SspMI CTAG 2 cut(s) 57, 243
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 2 cut(s) 56, 202
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 161, 226, 265
Tru1I TTAA 2 cut(s) 249, 268
Tru9I TTAA 2 cut(s) 249, 268
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 2 cut(s) 57, 243
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.