Prupe.2G240100_v2.0.a1

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0003727
Physical Location & Seq
Reverse (-)
26011581 .. 26011805
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G240100.1

Sequence Viewer

Length: 225 bp
ATGGAAAGCCAGAAAACCAACGGTAGCGTGAGCTTCTTCAAGATGCCGCTCCACTACCCAAGATATACCAAGAAGGACTACCAGGACATGCCTGAGTGGAAGGTCAACCGGCTTCTTGCAGAGTATGGGTTGTCTACCAAGGGTGACTTGGCTCACAAGAGAGAGTTTGCAATGGGTGCCTTTCTCTGGCCTGAGCTGCGCCATGATCCAAACATCTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.72

Weight (kDa)

9.0

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 134
AciI CCGC 1 cut(s) 47
AclWI GGATC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 33, 196
AluI AGCT 2 cut(s) 33, 196
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 83
BisI GCNGC 2 cut(s) 47, 197
BlsI GCNGC 2 cut(s) 48, 198
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 84, 183
BseXI GCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 186
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 2 cut(s) 85, 184
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 93, 192
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 2 cut(s) 176, 196
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 190
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 108
CviAII CATG 2 cut(s) 88, 203
CviJI RGCY 6 cut(s) 9, 33, 112, 152, 190, 196
CviKI_1 RGCY 6 cut(s) 9, 33, 112, 152, 190, 196
DdeI CTNAG 2 cut(s) 93, 192
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 91, 206
FaiI YATR 5 cut(s) 66, 89, 126, 204, 223
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 2 cut(s) 87, 202
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 47, 197
Fsp4HI GCNGC 2 cut(s) 47, 197
GlaI GCGC 1 cut(s) 200
GluI GCNGC 2 cut(s) 47, 197
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 109
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 91, 206
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 106, 135
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 106, 135
HpyAV CCTTC 2 cut(s) 67, 94
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 119, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 196
HpyF3I CTNAG 2 cut(s) 93, 192
Hsp92II CATG 2 cut(s) 91, 206
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 7 cut(s) 23, 68, 95, 105, 122, 172, 204
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 207
MbiI CCGCTC 1 cut(s) 49
MboI GATC 1 cut(s) 205
MboII GAAGA 2 cut(s) 28, 210
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 176, 196
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 91, 206
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 91
PkrI GCNGC 2 cut(s) 48, 198
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 178
SatI GCNGC 2 cut(s) 47, 197
Sau3AI GATC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 83
SetI ASST 3 cut(s) 35, 105, 198
SfaNI GCATC 1 cut(s) 33
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 23
TauI GCSGC 1 cut(s) 49
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 210
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.