Rroxscaffold_4G00288510

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003727
Physical Location & Seq
Forward (+)
9285746 .. 9288849
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288510.1

Sequence Viewer

Length: 228 bp
ATGGAAAGCAGAAAGGTGAATAGCGCAAGCAGCTTCCAGATGCCCCTTCACTACCCTAGGTACACCAGAAAGGACTACCAGGACATGCCCGAGTGGAAGCTCGACCGCCTTCTTGCCGATTATGGGTTGCTGGCTCACGGTGACTTGGCTTACAAGAGAGACTTTGCAATGGGCGCCTTTCTCTGGCCTGATCATTGTCGCCGATCGATCAGGAAACATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.98

Weight (kDa)

9.2

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 18 - 63 4.8e-27 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 123, 183
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 2 cut(s) 33, 100
AluI AGCT 2 cut(s) 33, 100
Alw26I GTCTC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 30
AspA2I CCTAGG 1 cut(s) 56
AspLEI GCGC 2 cut(s) 26, 176
AsuHPI GGTGA 2 cut(s) 28, 152
AvaI CYCGRG 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 80
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 177
BisI GCNGC 1 cut(s) 31
BlnI CCTAGG 1 cut(s) 56
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 2 cut(s) 30, 211
Bsa29I ATCGAT 1 cut(s) 206
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 183
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 123, 183
BseMI GCAATG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 42
Bsh1285I CGRYCG 2 cut(s) 106, 206
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 206
BsiEI CGRYCG 2 cut(s) 106, 206
BsiHKCI CYCGRG 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 123, 183
BsmAI GTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 89
Bsp143I GATC 3 cut(s) 190, 203, 207
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 3 cut(s) 190, 203, 207
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 28, 132
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 2 cut(s) 26, 176
BstKTI GATC 3 cut(s) 193, 206, 210
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 3 cut(s) 190, 203, 207
BstMCI CGRYCG 2 cut(s) 106, 206
BstMWI GCNNNNNNNGC 2 cut(s) 30, 173
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 42
Bsu15I ATCGAT 1 cut(s) 206
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 28, 132
CfoI GCGC 2 cut(s) 26, 176
ClaI ATCGAT 1 cut(s) 206
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 85, 218
CviJI RGCY 5 cut(s) 33, 100, 134, 149, 187
CviKI_1 RGCY 5 cut(s) 33, 100, 134, 149, 187
CviQI GTAC 1 cut(s) 61
DinI GGCGCC 1 cut(s) 175
DpnI GATC 3 cut(s) 192, 205, 209
DpnII GATC 3 cut(s) 190, 203, 207
Eco130I CCWWGG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 56
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 2 cut(s) 88, 221
FaiI YATR 3 cut(s) 86, 123, 219
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 2 cut(s) 84, 217
FbaI TGATCA 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 57
GlaI GCGC 2 cut(s) 25, 175
GluI GCNGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 187
HhaI GCGC 2 cut(s) 26, 176
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 88, 221
Hin6I GCGC 2 cut(s) 24, 174
HinP1I GCGC 2 cut(s) 24, 174
HphI GGTGA 2 cut(s) 28, 152
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 37, 211
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 56, 119
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 173
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 88, 221
HspAI GCGC 2 cut(s) 24, 174
KasI GGCGCC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 3 cut(s) 190, 203, 207
LpnPI CCDG 8 cut(s) 50, 65, 79, 92, 116, 169, 196, 201
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 2 cut(s) 30, 211
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 192, 205, 209
MboI GATC 3 cut(s) 190, 203, 207
Mly113I GGCGCC 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 30, 173
NarI GGCGCC 1 cut(s) 174
NdeII GATC 3 cut(s) 190, 203, 207
NlaIII CATG 2 cut(s) 88, 221
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 88
PkrI GCNGC 1 cut(s) 32
Ple19I CGATCG 1 cut(s) 206
PluTI GGCGCC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 206
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 3 cut(s) 190, 203, 207
ScrFI CCNGG 1 cut(s) 80
SetI ASST 4 cut(s) 18, 35, 62, 102
SfaNI GCATC 2 cut(s) 30, 211
SfoI GGCGCC 1 cut(s) 175
SsiI CCGC 1 cut(s) 106
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 140
TaqI TCGA 2 cut(s) 102, 206
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 140
XceI RCATGY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.