Rw0G002400

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00073
OG0003727
Physical Location & Seq
Reverse (-)
4365 .. 4649
285 bp
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UTR
Exon/CDS
Intron
Rw0G002400.1

Sequence Viewer

Length: 285 bp
ATGGAGAGCCGAAAGATGAATGCAAGTAACTTCCAGATGCCCCTTCACTACCCAAGGTACAGCAGAAAGGACTACGAGGACATGCCTGAGTGGAAGCTCGACCATCTTCTCGGTCAGTATGGGTTGTCTGCGCACGGCGACTTGGCTTACAAGAGAGACTTCGCCATGGGTGCCTTCCTCTGGCCTGATCATCATCGCCATGAACCAAACCCTTGTAATAATTCATACCAGAATAATACCATCAAGGATGTTTCCAGTTCTCTTAGAGACAAAAAGATCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.17

Weight (kDa)

7.91

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 17 - 62 3.2e-27 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 170
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 180
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 150, 261
AoxI GGCC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 170
BccI CCATC 2 cut(s) 111, 248
BceAI ACGGC 1 cut(s) 151
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 150, 261
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 1 cut(s) 27
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 53, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 53, 165
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 255
BshFI GGCC 1 cut(s) 184
BshNI GGYRCC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 150, 261
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 187, 276
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 53, 165
BssMI GATC 2 cut(s) 187, 276
BssT1I CCWWGG 2 cut(s) 53, 165
BstDEI CTNAG 2 cut(s) 87, 263
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 2 cut(s) 190, 279
BstMAI GTCTC 2 cut(s) 150, 261
BstMBI GATC 2 cut(s) 187, 276
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 253
CfoI GCGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 58
CviAII CATG 4 cut(s) 82, 166, 200, 280
CviJI RGCY 4 cut(s) 9, 97, 146, 184
CviKI_1 RGCY 4 cut(s) 9, 97, 146, 184
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 87, 263
DpnI GATC 2 cut(s) 189, 278
DpnII GATC 2 cut(s) 187, 276
Eco130I CCWWGG 2 cut(s) 53, 165
EcoT14I CCWWGG 2 cut(s) 53, 165
ErhI CCWWGG 2 cut(s) 53, 165
FaeI CATG 4 cut(s) 85, 169, 203, 283
FaiI YATR 6 cut(s) 83, 120, 167, 201, 226, 281
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 4 cut(s) 81, 165, 199, 279
FbaI TGATCA 1 cut(s) 187
FokI GGATG 1 cut(s) 260
FspI TGCGCA 1 cut(s) 132
GlaI GCGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 184
HhaI GCGC 1 cut(s) 133
Hin1II CATG 4 cut(s) 85, 169, 203, 283
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 53, 184
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 87, 263
Hsp92II CATG 4 cut(s) 85, 169, 203, 283
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 187, 276
LpnPI CCDG 6 cut(s) 47, 99, 166, 198, 242, 268
LweI GCATC 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 26
MalI GATC 2 cut(s) 189, 278
MboI GATC 2 cut(s) 187, 276
MboII GAAGA 1 cut(s) 98
MluCI AATT 1 cut(s) 220
MnlI CCTC 2 cut(s) 70, 188
MslI CAYNNNNRTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 165
NdeII GATC 2 cut(s) 187, 276
NlaIII CATG 4 cut(s) 85, 169, 203, 283
NlaIV GGNNCC 1 cut(s) 172
NsbI TGCGCA 1 cut(s) 132
NspI RCATGY 1 cut(s) 85
PctI GAATGC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 198
Sau3AI GATC 2 cut(s) 187, 276
SetI ASST 2 cut(s) 59, 99
SfaNI GCATC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 1 cut(s) 220
StyI CCWWGG 2 cut(s) 53, 165
TaqI TCGA 1 cut(s) 99
TaqII GACCGA 1 cut(s) 101
TasI AATT 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 32, 213, 216
XceI RCATGY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.