Prupe.2G240200_v2.0.a1

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
26014547 .. 26015336
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G240200.1

Sequence Viewer

Length: 225 bp
ATGGAAAGCCAGAAAACCAACGGTAGCGTGAGCTTCTTCAAGATGCCGCTCCACTATCCAAGATATACCAAGAAGGACTACCAGGACATGCCTGAGTGGAAGGTCAACCGGCTTCTTGCAGAGTATGGGTTGTCTACCACTGGTGACTTGGCTCGCAAGAGAGAGTTTGCAATGGGTGCCTTTCTCTGGCCTGAGCAGCGCCATAATCCAAACCCTTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.71

Weight (kDa)

9.4

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 134
AciI CCGC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 202
BisI GCNGC 2 cut(s) 47, 197
BlsI GCNGC 2 cut(s) 48, 198
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 84, 183
BseNI ACTGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 176
BsiSI CCGG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 186
BsnI GGCC 1 cut(s) 190
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 2 cut(s) 85, 184
BspLI GGNNCC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 108
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 93, 192
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 176, 196
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 108
CviAII CATG 1 cut(s) 88
CviJI RGCY 5 cut(s) 9, 33, 112, 152, 190
CviKI_1 RGCY 5 cut(s) 9, 33, 112, 152, 190
DdeI CTNAG 2 cut(s) 93, 192
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 66, 89, 126, 204, 223
FatI CATG 1 cut(s) 87
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 47, 197
Fsp4HI GCNGC 2 cut(s) 47, 197
GlaI GCGC 1 cut(s) 200
GluI GCNGC 2 cut(s) 47, 197
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 109
HhaI GCGC 1 cut(s) 201
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 106, 135
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 106, 135
HpyAV CCTTC 3 cut(s) 67, 94, 225
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 2 cut(s) 119, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 196
HpyF3I CTNAG 2 cut(s) 93, 192
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 8 cut(s) 23, 68, 95, 105, 122, 126, 172, 204
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 143
MbiI CCGCTC 1 cut(s) 49
MboII GAAGA 2 cut(s) 28, 210
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 176, 196
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 91
PkrI GCNGC 2 cut(s) 48, 198
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 178
SatI GCNGC 2 cut(s) 47, 197
ScrFI CCNGG 1 cut(s) 83
SetI ASST 2 cut(s) 35, 105
SfaNI GCATC 1 cut(s) 33
SsiI CCGC 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 23
TauI GCSGC 1 cut(s) 49
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 145
XceI RCATGY 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.