RLG00000030888

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003727
Physical Location & Seq
Reverse (-)
446788 .. 447105
318 bp
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UTR
Exon/CDS
Intron
RLM00000030888

Sequence Viewer

Length: 318 bp
ATGGCGGCCGCCTTGAGTTGGCTTACTGTCTTTCTATACCCGAAAAAGGACTCAAACCCTAAAACTCAAGATCGTGACCATGTCAAGGTCTCCAAGATTGGGGTTGGGGGATTGTCCTCGGCCCACAGTTCACCTGCTGCAGGATTCCAAATGCCTCTTCACTATCCTCGTTACACGAAGGCCGACTACGAGAAGATGGAGGAGTGGAGGTTGGATCTGCTTCTCAAGCAATATGGCCTAACTGCTGTCAGCAATGGAACTCTCGAGGAGAAGAGGGCTTATGCAATCGGAGCTTTCTTGTGGCCTGATCAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.87

Weight (kDa)

8.83

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 55 - 102 4.6e-26 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 2 cut(s) 5, 9
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 6
AfiI CCNNNNNNNGG 5 cut(s) 18, 46, 85, 99, 140
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 5 cut(s) 6, 120, 180, 235, 302
ApeKI GCWGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 190
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 3 cut(s) 6, 9, 138
BlsI GCNGC 3 cut(s) 7, 10, 139
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 121
BpuEI CTTGAG 3 cut(s) 34, 51, 209
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 46, 85, 99, 140
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 5 cut(s) 18, 46, 85, 99, 140
BseMI GCAATG 1 cut(s) 259
BseRI GAGGAG 2 cut(s) 215, 281
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 5 cut(s) 8, 122, 182, 237, 304
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 263
BslI CCNNNNNNNGG 5 cut(s) 18, 46, 85, 99, 140
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 5 cut(s) 8, 122, 182, 237, 304
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 3 cut(s) 70, 214, 307
BspACI CCGC 2 cut(s) 5, 9
BspANI GGCC 5 cut(s) 8, 122, 182, 237, 304
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 3 cut(s) 70, 214, 307
Bst4CI ACNGT 2 cut(s) 28, 128
Bst6I CTCTTC 2 cut(s) 162, 266
BstENI CCTNNNNNAGG 1 cut(s) 138
BstKTI GATC 3 cut(s) 73, 217, 310
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 3 cut(s) 70, 214, 307
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 226, 290
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 5 cut(s) 8, 122, 182, 237, 304
BveI ACCTGC 1 cut(s) 142
CciNI GCGGCCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 1 cut(s) 80
CviJI RGCY 8 cut(s) 8, 22, 122, 182, 237, 278, 293, 304
CviKI_1 RGCY 8 cut(s) 8, 22, 122, 182, 237, 278, 293, 304
DpnI GATC 3 cut(s) 72, 216, 309
DpnII GATC 3 cut(s) 70, 214, 307
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 162, 266
EarI CTCTTC 2 cut(s) 162, 266
EclXI CGGCCG 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 138
FaeI CATG 1 cut(s) 83
FaiI YATR 4 cut(s) 37, 81, 234, 282
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 6, 9, 138
Fsp4HI GCNGC 3 cut(s) 6, 9, 138
GluI GCNGC 3 cut(s) 6, 9, 138
HaeIII GGCC 5 cut(s) 8, 122, 182, 237, 304
Hin1II CATG 1 cut(s) 83
HinfI GANTC 2 cut(s) 50, 144
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 3 cut(s) 68, 74, 263
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 28, 128
HpyCH4V TGCA 2 cut(s) 140, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 290
Hsp92II CATG 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 70, 214, 307
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 2 cut(s) 126, 147
Lsp1109I GCAGC 1 cut(s) 124
MaeIII GTNAC 2 cut(s) 74, 170
MalI GATC 3 cut(s) 72, 216, 309
MboI GATC 3 cut(s) 70, 214, 307
MboII GAAGA 3 cut(s) 149, 205, 283
MflI RGATCY 1 cut(s) 214
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 7 cut(s) 127, 165, 177, 193, 201, 259, 267
MseI TTAA 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 226, 290
NdeII GATC 3 cut(s) 70, 214, 307
NlaIII CATG 1 cut(s) 83
NmeAIII GCCGAG 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 74
NotI GCGGCCGC 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 263
PaqCI CACCTGC 1 cut(s) 142
PfeI GAWTC 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 7, 10, 139
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 121
PstI CTGCAG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 3 cut(s) 6, 9, 138
Sau3AI GATC 3 cut(s) 70, 214, 307
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 44
SetI ASST 4 cut(s) 90, 136, 212, 295
SfcI CTRYAG 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 4 cut(s) 13, 66, 224, 263
SmoI CTYRAG 4 cut(s) 13, 66, 224, 263
SsiI CCGC 2 cut(s) 5, 9
TaaI ACNGT 2 cut(s) 28, 128
TaqI TCGA 1 cut(s) 264
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.