Rw5G000590

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003727
Physical Location & Seq
Reverse (-)
421897 .. 422645
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000590.1

Sequence Viewer

Length: 318 bp
ATGGCGGCCGCCTTGAGTTGGCTTACTGTCTTTCTATACCCGAAAAAGGACTCAAACCCTAAAACTCAAGATGGTGAGCATGTCAAGGTCTCCAAGATTGGGGTTGGGGGATTGTCCTCAGCCTATAGTTCAACTGCTGCAGGATTCCAAATGCCTCTTCACTATCCTCGGTACACGAAGGCTGACTACGAGAAGATGGAGGAGTGGAGGTTGGATCTGCTTCTCAAGCAATATGGCCTAACTGCTGTCAGCAATGGAACTCTCGAGGAGAAGAGGGCTTATGCAATCGGAGCTTTCTTGTGGCCTGATCAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

7.91

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 55 - 102 4.6e-26 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 9
AclWI GGATC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 6
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 18, 46, 99
AgsI TTSAA 1 cut(s) 132
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 3 cut(s) 6, 235, 302
ApeKI GCWGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 263
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 65, 190
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 2 cut(s) 124, 138
BisI GCNGC 3 cut(s) 6, 9, 138
BlsI GCNGC 3 cut(s) 7, 10, 139
BmeT110I CYCGRG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 118
BpuEI CTTGAG 3 cut(s) 34, 51, 209
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 46, 99
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 167
BseLI CCNNNNNNNGG 3 cut(s) 18, 46, 99
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 2 cut(s) 215, 281
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 8, 237, 304
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 18, 46, 99
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 3 cut(s) 8, 237, 304
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 263
Bsp143I GATC 2 cut(s) 214, 307
BspACI CCGC 2 cut(s) 5, 9
BspANI GGCC 3 cut(s) 8, 237, 304
BspCNI CTCAG 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 142
BspPI GGATC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 214, 307
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 162, 266
BstDEI CTNAG 1 cut(s) 118
BstKTI GATC 2 cut(s) 217, 310
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 214, 307
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 226, 290
BstNSI RCATGY 1 cut(s) 83
BstSFI CTRYAG 2 cut(s) 124, 138
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 8, 237, 304
CciNI GCGGCCGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 80
CviJI RGCY 8 cut(s) 8, 22, 122, 182, 237, 278, 293, 304
CviKI_1 RGCY 8 cut(s) 8, 22, 122, 182, 237, 278, 293, 304
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 118
DpnI GATC 2 cut(s) 216, 309
DpnII GATC 2 cut(s) 214, 307
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 162, 266
EarI CTCTTC 2 cut(s) 162, 266
EclXI CGGCCG 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 263
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 37, 81, 126, 234, 282
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 6, 9, 138
Fsp4HI GCNGC 3 cut(s) 6, 9, 138
GluI GCNGC 3 cut(s) 6, 9, 138
HaeIII GGCC 3 cut(s) 8, 237, 304
Hin1II CATG 1 cut(s) 83
HinfI GANTC 2 cut(s) 50, 144
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 2 cut(s) 68, 263
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 140, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 290
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 2 cut(s) 214, 307
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 124
MalI GATC 2 cut(s) 216, 309
MboI GATC 2 cut(s) 214, 307
MboII GAAGA 3 cut(s) 149, 205, 283
MflI RGATCY 1 cut(s) 214
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 7 cut(s) 127, 165, 177, 193, 201, 259, 267
MseI TTAA 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 226, 290
NdeII GATC 2 cut(s) 214, 307
NlaIII CATG 1 cut(s) 83
NotI GCGGCCGC 1 cut(s) 6
NspI RCATGY 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 263
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 3 cut(s) 7, 10, 139
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 3 cut(s) 6, 9, 138
Sau3AI GATC 2 cut(s) 214, 307
SchI GAGTC 1 cut(s) 44
SetI ASST 3 cut(s) 90, 212, 295
SfcI CTRYAG 2 cut(s) 124, 138
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 4 cut(s) 13, 66, 224, 263
SmoI CTYRAG 4 cut(s) 13, 66, 224, 263
SsiI CCGC 2 cut(s) 5, 9
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 264
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseI GCWGC 1 cut(s) 137
XceI RCATGY 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.