Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011992.1

Orthogroup ID

OG0003727

Physical Location & Seq

Genomic Coordinates Forward (+)

32075 .. 32392

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011992.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggcggccgccttgagttggcttactgtctttctatacccgaaaaaggactcaaaccctaaaactcaagatggtgagcatgtcaaggtctccaagattggggttgggggattgtcctcagcctatagttcaactgctgcaggattccaaatgcctcttcactatcctcggtacacgaaggctgactacgagaagatggaggagtggaggttggatctgcttctcaagcaatatggcctaactgctgtcagcaatggaactctcgaggagaagagggcttatgcaatcggagctttcttgtggcctgatcagtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

7.91

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003727)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09950
fragaria_vesca	FvH4_3g00510 FvH4_7g23090 FvH4_7g23130
prunus_persica	Prupe.2G240100_v2.0.a1 Prupe.2G240200_v2.0.a1 Prupe.4G006200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0367441 RchiOBHm_Chr1g0368351 RchiOBHm_Chr1g0368481 RchiOBHm_Chr5g0000691
rosa_laevigata	RLG00000027217 RLG00000030888
rosa_multiflora	Rmu_sc0000255.1_g000001 Rmu_sc0002709.1_g000046 Rmu_sc0006908.1_g000023 Rmu_sc0011992.1_g000008
rosa_roxburghii	Rroxscaffold_1G00075520 Rroxscaffold_4G00288510 Rroxscaffold_4G00288620
rosa_rugosa	Rorug01G0342000 Rorug04G0386100
rosa_samantha	Rh1AG348000 Rh1BG311000 Rh1BG312500 Rh1DG342800 Rh1DG344000 Rh5BG007500 Rh5CG006300 Rh5DG006200
rosa_wichuraiana	Rw0G002400 Rw1G030980 Rw1G031100 Rw5G000590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 9
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	18, 46, 99
AgsI	TTSAA	1 cut(s)	132
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	3 cut(s)	6, 235, 302
ApeKI	GCWGC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	263
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbvCI	CCTCAGC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	65, 190
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	94
BfmI	CTRYAG	2 cut(s)	124, 138
BisI	GCNGC	3 cut(s)	6, 9, 138
BlsI	GCNGC	3 cut(s)	7, 10, 139
BmeT110I	CYCGRG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	118
BpuEI	CTTGAG	3 cut(s)	34, 51, 209
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 46, 99
Bse3DI	GCAATG	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	18, 46, 99
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	215, 281
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	124
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	8, 237, 304
BsiEI	CGRYCG	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	263
BslI	CCNNNNNNNGG	3 cut(s)	18, 46, 99
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	3 cut(s)	8, 237, 304
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	214, 307
BspACI	CCGC	2 cut(s)	5, 9
BspANI	GGCC	3 cut(s)	8, 237, 304
BspCNI	CTCAG	1 cut(s)	131
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	214, 307
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	2 cut(s)	162, 266
BstDEI	CTNAG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	217, 310
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	2 cut(s)	214, 307
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 290
BstNSI	RCATGY	1 cut(s)	83
BstSFI	CTRYAG	2 cut(s)	124, 138
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	8, 237, 304
CciNI	GCGGCCGC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	8 cut(s)	8, 22, 122, 182, 237, 278, 293, 304
CviKI_1	RGCY	8 cut(s)	8, 22, 122, 182, 237, 278, 293, 304
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	216, 309
DpnII	GATC	2 cut(s)	214, 307
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	162, 266
EarI	CTCTTC	2 cut(s)	162, 266
EclXI	CGGCCG	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	94
Eco52I	CGGCCG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	263
FaeI	CATG	1 cut(s)	83
FaiI	YATR	5 cut(s)	37, 81, 126, 234, 282
FatI	CATG	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	6, 9, 138
Fsp4HI	GCNGC	3 cut(s)	6, 9, 138
GluI	GCNGC	3 cut(s)	6, 9, 138
HaeIII	GGCC	3 cut(s)	8, 237, 304
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	2 cut(s)	50, 144
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	290
Hpy188III	TCNNGA	2 cut(s)	68, 263
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	140, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 290
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	214, 307
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	1 cut(s)	126
Lsp1109I	GCAGC	1 cut(s)	124
MalI	GATC	2 cut(s)	216, 309
MboI	GATC	2 cut(s)	214, 307
MboII	GAAGA	3 cut(s)	149, 205, 283
MflI	RGATCY	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	127, 165, 177, 193, 201, 259, 267
MseI	TTAA	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	226, 290
NdeII	GATC	2 cut(s)	214, 307
NlaIII	CATG	1 cut(s)	83
NotI	GCGGCCGC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	7, 10, 139
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	3 cut(s)	6, 9, 138
Sau3AI	GATC	2 cut(s)	214, 307
SchI	GAGTC	1 cut(s)	44
SetI	ASST	3 cut(s)	90, 212, 295
SfcI	CTRYAG	2 cut(s)	124, 138
Sfr274I	CTCGAG	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	263
SmlI	CTYRAG	4 cut(s)	13, 66, 224, 263
SmoI	CTYRAG	4 cut(s)	13, 66, 224, 263
SsiI	CCGC	2 cut(s)	5, 9
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	264
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TseI	GCWGC	1 cut(s)	137
XceI	RCATGY	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.