FvH4_3g03790

PAP-specific phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2130409 .. 2133928
3520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03790.t1

Sequence Viewer

Length: 1299 bp
ATGATTCTCGCAAACTCCTCCCGCCAATTTTCGACCGTCCGATTCACCCTCCCCACCTCCTCTTCCCCTACGCCTCTCCGCACCCGAATCCTCACCTTCACCTCCTCCTCCGCCTCTCTCCCCCGCCGCCTCTCCCATTTCAAATGCCTCTCCGCCTCTCTCCCCTTCGCCGCCGAGACCGCCAAGCACTACCGAGAGCTCGAGGCCGCCATTGACGTCGTCGAAGCCGCTTCCAAGATCTGCGTCGAGGTCCAAACGGCGCTACAGTCCAGCGCCACCGGGATTCGGGAGAAGAACGACCAGACTCCGGTCACCGTCGCCGATTTCAGCGTCCAGGCGCTCATCAGTTTAGAGCTCGGGAGACGATTCCCGTCGATTCCGTTGGTGGCGGAGGAGGACTCGGCGTCGGTGCGGGCGTTGAATCTGGTGGAGCCGGTGGTGAATGCGGTGGTGGAAAAGGCCGGCGCCGGAGAAGAGCCGTTGACGGCGGAGGATGTGTTGGAGGCGATTGATAGAGGCGGACCGGAGGCTTTTACCTTCGGAGCTCAACCGGCGACGTATTGGTTACTGGATCCAATTGATGGCACAAGAGGATTTGTGATGGGAAATAAGGCCTTGTATGTGGTAGGTTTGGCTCTTGTAGTTGATGGGGAGATTGTATTAGGTGTCATGGGCTGTCCGCACTGGCAGGAATCAAACAAATGTATCTCTGGAGTCCAGGAAGAGAAGAGCATTCCATTTGGAACAGGGCTTCTTATGGTCTCACATATTGGTTGTGGCACATGGACAAGAAGTTTATCATCTGTGATAAATGGCACACCCAGGACTCCTTACTCATGGACTCGTAGCTTTGTTGATGACTGTTCTATAGTGCCTCAGGCTCGCTTTTGTATCACAGAGAGTGAAGCATGGGAGGCATTGCCACCGGCAGCTTTATTTACCTCAACAACTAATGCTGAGAGTGTTGGTCAAAGTCAAGTACTCGTTTTGAAACCTTGTTGTGGAAGTTTATGCAAGTATTTATTGGTGGCTTCAGGTAGGGGTTCTGTTTTCATTCAGCGACAGAAAGATAAAGTTGTAAAGGCTTGGGATCACGCTGTTGGTATTATATGCGTACTTGAAGCAGGAGGAACGGCAACTGACTGGGAAGGAAATCAAGTTGATCTTGCAGCAGATGAAGTCGGACGGAGGATTATATACCCTCAAGGTGGTTTCCTTGTGAGTAATGGCAAGATACATAACCAGCTTCTGGAACTGATATCTTCCACTTCATCAACAGTTTCAGCTAGCCGTATATAA

Protein Analysis

433

Amino Acids

46.26

Weight (kDa)

5.43

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 73 - 420 5.4e-29 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 2 cut(s) 581, 1249
AclWI GGATC 3 cut(s) 566, 579, 1098
AcuI CTGAAG 1 cut(s) 1017
AcyI GRCGYC 3 cut(s) 216, 404, 465
AfaI GTAC 2 cut(s) 981, 1116
AfiI CCNNNNNNNGG 6 cut(s) 285, 307, 581, 1001, 1208, 1249
AgsI TTSAA 4 cut(s) 142, 421, 991, 1121
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 3 cut(s) 333, 717, 821
AluBI AGCT 7 cut(s) 199, 355, 545, 849, 932, 1246, 1286
AluI AGCT 7 cut(s) 199, 355, 545, 849, 932, 1246, 1286
Alw21I GWGCWC 3 cut(s) 201, 357, 547
Alw26I GTCTC 3 cut(s) 170, 355, 766
AlwI GGATC 3 cut(s) 566, 579, 1098
AlwNI CAGNNNCTG 1 cut(s) 1249
Ama87I CYCGRG 2 cut(s) 200, 356
AoxI GGCC 3 cut(s) 204, 459, 612
ApeKI GCWGC 2 cut(s) 929, 1169
AspLEI GCGC 4 cut(s) 262, 275, 340, 467
AspS9I GGNCC 2 cut(s) 250, 521
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 5 cut(s) 37, 85, 91, 304, 451
AsuNHI GCTAGC 1 cut(s) 1286
AvaI CYCGRG 2 cut(s) 200, 356
AvaII GGWCC 2 cut(s) 250, 521
AxyI CCTNAGG 1 cut(s) 876
BaeI ACNNNNGTAYC 2 cut(s) 688, 721
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 3 cut(s) 201, 357, 547
Bbv12I GWGCWC 3 cut(s) 201, 357, 547
BbvI GCAGC 2 cut(s) 941, 1181
BccI CCATC 3 cut(s) 575, 595, 641
BceAI ACGGC 5 cut(s) 273, 463, 501, 1149, 1275
BciT130I CCWGG 3 cut(s) 335, 719, 823
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 3 cut(s) 170, 355, 766
BfaI CTAG 1 cut(s) 1287
BfmI CTRYAG 2 cut(s) 263, 867
BfoI RGCGCY 4 cut(s) 263, 276, 341, 468
BglII AGATCT 1 cut(s) 237
BisI GCNGC 6 cut(s) 127, 171, 207, 228, 930, 1170
BlsI GCNGC 6 cut(s) 128, 172, 208, 229, 931, 1171
BmcAI AGTACT 1 cut(s) 981
Bme1390I CCNGG 4 cut(s) 280, 335, 719, 823
Bme18I GGWCC 2 cut(s) 250, 521
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 2 cut(s) 200, 356
BmgT120I GGNCC 2 cut(s) 250, 521
BmiI GGNNCC 3 cut(s) 432, 466, 573
BmrFI CCNGG 4 cut(s) 280, 335, 719, 823
BmrI ACTGGG 1 cut(s) 1153
BmtI GCTAGC 1 cut(s) 1290
BmuI ACTGGG 1 cut(s) 1153
BoxI GACNNNNGTC 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 1188
BpuMI CCSGG 1 cut(s) 280
BsaHI GRCGYC 3 cut(s) 216, 404, 465
BsaI GGTCTC 2 cut(s) 170, 766
BsaJI CCNNGG 1 cut(s) 821
BsaWI WCCGGW 2 cut(s) 307, 523
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 6 cut(s) 285, 307, 581, 1001, 1208, 1249
Bse118I RCCGGY 4 cut(s) 433, 461, 550, 925
Bse1I ACTGG 3 cut(s) 573, 689, 1148
Bse21I CCTNAGG 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 917
BseBI CCWGG 3 cut(s) 335, 719, 823
BseDI CCNNGG 1 cut(s) 821
BseGI GGATG 1 cut(s) 499
BseLI CCNNNNNNNGG 6 cut(s) 285, 307, 581, 1001, 1208, 1249
BseMI GCAATG 1 cut(s) 917
BseMII CTCAG 2 cut(s) 890, 948
BseNI ACTGG 3 cut(s) 573, 689, 1148
BseRI GAGGAG 5 cut(s) 7, 49, 94, 97, 407
BseXI GCAGC 2 cut(s) 941, 1181
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 3 cut(s) 206, 461, 614
BshNI GGYRCC 1 cut(s) 464
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 3 cut(s) 201, 357, 547
BsiHKCI CYCGRG 2 cut(s) 200, 356
BsiSI CCGG 8 cut(s) 279, 308, 434, 462, 468, 524, 551, 926
BslI CCNNNNNNNGG 6 cut(s) 285, 307, 581, 1001, 1208, 1249
BsmAI GTCTC 3 cut(s) 170, 355, 766
BsmBI CGTCTC 1 cut(s) 355
BsmI GAATGC 2 cut(s) 448, 732
BsnI GGCC 3 cut(s) 206, 461, 614
Bso31I GGTCTC 2 cut(s) 170, 766
BsoBI CYCGRG 2 cut(s) 200, 356
Bsp1286I GDGCHC 3 cut(s) 201, 357, 547
Bsp143I GATC 4 cut(s) 237, 571, 1090, 1162
BspANI GGCC 3 cut(s) 206, 461, 614
BspCNI CTCAG 2 cut(s) 889, 949
BspLI GGNNCC 3 cut(s) 432, 466, 573
BspOI GCTAGC 1 cut(s) 1290
BspPI GGATC 3 cut(s) 566, 579, 1098
BspQI GCTCTTC 2 cut(s) 468, 722
BspT107I GGYRCC 1 cut(s) 464
BspTNI GGTCTC 2 cut(s) 170, 766
BsrDI GCAATG 1 cut(s) 917
BsrFI RCCGGY 4 cut(s) 433, 461, 550, 925
BsrI ACTGG 3 cut(s) 573, 689, 1148
BssAI RCCGGY 4 cut(s) 433, 461, 550, 925
BssECI CCNNGG 1 cut(s) 821
BssMI GATC 4 cut(s) 237, 571, 1090, 1162
BssNI GRCGYC 3 cut(s) 216, 404, 465
Bst2UI CCWGG 3 cut(s) 335, 719, 823
Bst4CI ACNGT 5 cut(s) 37, 267, 316, 863, 1279
Bst6I CTCTTC 4 cut(s) 67, 468, 717, 722
BstACI GRCGYC 3 cut(s) 216, 404, 465
BstC8I GCNNGC 4 cut(s) 414, 463, 883, 1288
BstDEI CTNAG 2 cut(s) 876, 957
BstEII GGTNACC 1 cut(s) 310
BstF5I GGATG 1 cut(s) 499
BstH2I RGCGCY 4 cut(s) 263, 276, 341, 468
BstHHI GCGC 4 cut(s) 262, 275, 340, 467
BstKTI GATC 4 cut(s) 240, 574, 1093, 1165
BstMAI GTCTC 3 cut(s) 170, 355, 766
BstMBI GATC 4 cut(s) 237, 571, 1090, 1162
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 179, 551, 914
BstNI CCWGG 3 cut(s) 335, 719, 823
BstPAI GACNNNNGTC 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 310
BstSCI CCNGG 4 cut(s) 278, 333, 717, 821
BstSFI CTRYAG 2 cut(s) 263, 867
BstV1I GCAGC 2 cut(s) 941, 1181
BstX2I RGATCY 2 cut(s) 237, 571
BstYI RGATCY 2 cut(s) 237, 571
Bsu36I CCTNAGG 1 cut(s) 876
BsuRI GGCC 3 cut(s) 206, 461, 614
BtsCI GGATG 1 cut(s) 499
BtsIMutI CAGTG 1 cut(s) 682
Cac8I GCNNGC 4 cut(s) 414, 463, 883, 1288
CaiI CAGNNNCTG 1 cut(s) 1249
CfoI GCGC 4 cut(s) 262, 275, 340, 467
Cfr10I RCCGGY 4 cut(s) 433, 461, 550, 925
Cfr13I GGNCC 2 cut(s) 250, 521
CpoI CGGWCCG 1 cut(s) 521
CseI GACGC 3 cut(s) 232, 319, 393
Csp6I GTAC 2 cut(s) 980, 1115
CspI CGGWCCG 1 cut(s) 521
CviAII CATG 4 cut(s) 670, 783, 837, 909
CviQI GTAC 2 cut(s) 980, 1115
DdeI CTNAG 2 cut(s) 876, 957
DinI GGCGCC 1 cut(s) 466
DpnI GATC 4 cut(s) 239, 573, 1092, 1164
DpnII GATC 4 cut(s) 237, 571, 1090, 1162
DriI GACNNNNNGTC 1 cut(s) 403
Eam1104I CTCTTC 4 cut(s) 67, 468, 717, 722
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 4 cut(s) 67, 468, 717, 722
EciI GGCGGA 5 cut(s) 100, 142, 404, 503, 534
Ecl136II GAGCTC 3 cut(s) 199, 355, 545
Eco147I AGGCCT 1 cut(s) 614
Eco24I GRGCYC 3 cut(s) 201, 357, 547
Eco31I GGTCTC 2 cut(s) 170, 766
Eco32I GATATC 1 cut(s) 1260
Eco47I GGWCC 2 cut(s) 250, 521
Eco53kI GAGCTC 3 cut(s) 199, 355, 545
Eco57I CTGAAG 1 cut(s) 1017
Eco81I CCTNAGG 1 cut(s) 876
Eco88I CYCGRG 2 cut(s) 200, 356
Eco91I GGTNACC 1 cut(s) 310
EcoICRI GAGCTC 3 cut(s) 199, 355, 545
EcoO65I GGTNACC 1 cut(s) 310
EcoRII CCWGG 3 cut(s) 333, 717, 821
EcoRV GATATC 1 cut(s) 1260
EcoT38I GRGCYC 3 cut(s) 201, 357, 547
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 4 cut(s) 673, 786, 840, 912
FalI AAGNNNNNCTT 2 cut(s) 1149, 1181
FatI CATG 4 cut(s) 669, 782, 836, 908
FauI CCCGC 3 cut(s) 29, 131, 405
Fnu4HI GCNGC 6 cut(s) 127, 171, 207, 228, 930, 1170
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 3 cut(s) 201, 357, 547
Fsp4HI GCNGC 6 cut(s) 127, 171, 207, 228, 930, 1170
FspBI CTAG 1 cut(s) 1287
GlaI GCGC 4 cut(s) 261, 274, 339, 466
GluI GCNGC 6 cut(s) 127, 171, 207, 228, 930, 1170
GsuI CTGGAG 1 cut(s) 732
HaeII RGCGCY 4 cut(s) 263, 276, 341, 468
HaeIII GGCC 3 cut(s) 206, 461, 614
HapII CCGG 8 cut(s) 279, 308, 434, 462, 468, 524, 551, 926
HgaI GACGC 3 cut(s) 232, 319, 393
HhaI GCGC 4 cut(s) 262, 275, 340, 467
Hin1I GRCGYC 3 cut(s) 216, 404, 465
Hin1II CATG 4 cut(s) 673, 786, 840, 912
Hin6I GCGC 4 cut(s) 260, 273, 338, 465
HinP1I GCGC 4 cut(s) 260, 273, 338, 465
HincII GTYRAC 1 cut(s) 483
HindII GTYRAC 1 cut(s) 483
HpaII CCGG 8 cut(s) 279, 308, 434, 462, 468, 524, 551, 926
HphI GGTGA 5 cut(s) 37, 85, 91, 304, 451
Hpy166II GTNNAC 1 cut(s) 483
Hpy188I TCNGA 3 cut(s) 41, 542, 1184
Hpy188III TCNNGA 4 cut(s) 287, 358, 711, 1250
Hpy8I GTNNAC 1 cut(s) 483
Hpy99I CGWCG 7 cut(s) 221, 224, 248, 320, 376, 409, 559
HpyAV CCTTC 4 cut(s) 106, 175, 547, 1142
HpyCH4III ACNGT 5 cut(s) 37, 267, 316, 863, 1279
HpyCH4IV ACGT 2 cut(s) 216, 557
HpyCH4V TGCA 2 cut(s) 1014, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 551, 914
HpyF3I CTNAG 2 cut(s) 876, 957
HpySE526I ACGT 2 cut(s) 216, 557
Hsp92I GRCGYC 3 cut(s) 216, 404, 465
Hsp92II CATG 4 cut(s) 673, 786, 840, 912
HspAI GCGC 4 cut(s) 260, 273, 338, 465
KasI GGCGCC 1 cut(s) 464
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
Kzo9I GATC 4 cut(s) 237, 571, 1090, 1162
LguI GCTCTTC 2 cut(s) 468, 722
LmnI GCTCC 2 cut(s) 430, 542
Lsp1109I GCAGC 2 cut(s) 941, 1181
MaeI CTAG 1 cut(s) 1287
MaeII ACGT 2 cut(s) 216, 557
MaeIII GTNAC 2 cut(s) 310, 564
MalI GATC 4 cut(s) 239, 573, 1092, 1164
MboI GATC 4 cut(s) 237, 571, 1090, 1162
MboII GAAGA 6 cut(s) 54, 304, 485, 734, 739, 1254
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 2 cut(s) 237, 571
MhlI GDGCHC 3 cut(s) 201, 357, 547
MluCI AATT 2 cut(s) 26, 576
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 5 cut(s) 298, 392, 723, 820, 835
MmeI TCCRAC 2 cut(s) 480, 1162
MroNI GCCGGC 1 cut(s) 461
MspI CCGG 8 cut(s) 279, 308, 434, 462, 468, 524, 551, 926
MspR9I CCNGG 4 cut(s) 280, 335, 719, 823
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 2 cut(s) 448, 732
MvaI CCWGG 3 cut(s) 335, 719, 823
MwoI GCNNNNNNNGC 3 cut(s) 179, 551, 914
NaeI GCCGGC 1 cut(s) 463
NarI GGCGCC 1 cut(s) 465
NciI CCSGG 1 cut(s) 280
NdeII GATC 4 cut(s) 237, 571, 1090, 1162
NgoMIV GCCGGC 1 cut(s) 461
NheI GCTAGC 1 cut(s) 1286
NlaIII CATG 4 cut(s) 673, 786, 840, 912
NlaIV GGNNCC 3 cut(s) 432, 466, 573
NmeAIII GCCGAG 2 cut(s) 199, 380
NmuCI GTSAC 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 200
PceI AGGCCT 1 cut(s) 614
PciSI GCTCTTC 2 cut(s) 468, 722
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 2 cut(s) 448, 732
PdiI GCCGGC 1 cut(s) 463
PfeI GAWTC 8 cut(s) 4, 42, 87, 283, 366, 376, 421, 692
PflFI GACNNNGTC 1 cut(s) 218
PflMI CCANNNNNTGG 2 cut(s) 581, 1249
PfoI TCCNGGA 1 cut(s) 717
PkrI GCNGC 6 cut(s) 128, 172, 208, 229, 931, 1171
PleI GAGTC 5 cut(s) 298, 392, 722, 820, 835
PluTI GGCGCC 1 cut(s) 468
PpsI GAGTC 5 cut(s) 298, 392, 722, 820, 835
PshAI GACNNNNGTC 1 cut(s) 308
Psp124BI GAGCTC 3 cut(s) 201, 357, 547
Psp6I CCWGG 3 cut(s) 333, 717, 821
PspEI GGTNACC 1 cut(s) 310
PspGI CCWGG 3 cut(s) 333, 717, 821
PspN4I GGNNCC 3 cut(s) 432, 466, 573
PspPI GGNCC 2 cut(s) 250, 521
PspXI VCTCGAGB 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 1249
PsuI RGATCY 2 cut(s) 237, 571
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 2 cut(s) 981, 1116
RsaNI GTAC 2 cut(s) 980, 1115
Rsr2I CGGWCCG 1 cut(s) 521
RsrII CGGWCCG 1 cut(s) 521
SacI GAGCTC 3 cut(s) 201, 357, 547
SapI GCTCTTC 2 cut(s) 468, 722
SatI GCNGC 6 cut(s) 127, 171, 207, 228, 930, 1170
Sau3AI GATC 4 cut(s) 237, 571, 1090, 1162
Sau96I GGNCC 2 cut(s) 250, 521
ScaI AGTACT 1 cut(s) 981
SchI GAGTC 5 cut(s) 298, 392, 723, 820, 835
ScrFI CCNGG 4 cut(s) 280, 335, 719, 823
SduI GDGCHC 3 cut(s) 201, 357, 547
SfcI CTRYAG 2 cut(s) 263, 867
SfoI GGCGCC 1 cut(s) 466
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 2 cut(s) 250, 521
SlaI CTCGAG 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 200, 1203
SmoI CTYRAG 2 cut(s) 200, 1203
Sse9I AATT 2 cut(s) 26, 576
SseBI AGGCCT 1 cut(s) 614
SspDI GGCGCC 1 cut(s) 464
SspMI CTAG 1 cut(s) 1287
SstI GAGCTC 3 cut(s) 201, 357, 547
StuI AGGCCT 1 cut(s) 614
StyD4I CCNGG 4 cut(s) 278, 333, 717, 821
TaaI ACNGT 5 cut(s) 37, 267, 316, 863, 1279
TaiI ACGT 2 cut(s) 219, 560
TaqI TCGA 5 cut(s) 32, 201, 222, 246, 374
TasI AATT 2 cut(s) 26, 576
TatI WGTACW 1 cut(s) 979
TauI GCSGC 4 cut(s) 129, 173, 209, 230
TfiI GAWTC 8 cut(s) 4, 42, 87, 283, 366, 376, 421, 692
TscAI CASTG 1 cut(s) 689
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 2 cut(s) 929, 1169
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 1042, 1191, 1260
TspGWI ACGGA 2 cut(s) 369, 1201
TspRI CASTG 1 cut(s) 689
Tth111I GACNNNGTC 1 cut(s) 218
Van91I CCANNNNNTGG 2 cut(s) 581, 1249
VpaK11BI GGWCC 2 cut(s) 250, 521
XhoI CTCGAG 1 cut(s) 200
XspI CTAG 1 cut(s) 1287
ZraI GACGTC 1 cut(s) 217
ZrmI AGTACT 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.