Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007801

Physical Location & Seq

Genomic Coordinates Reverse (-)

3933761 .. 3942657

Gene Structure 8897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG047100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGGGAGGCTCGGGCATCGCTGCTGCTGCAACAGGCCGCAGTTGCCTACATTGGCCTTCTCTCCATCTCGGTTCGTGCTGGATTCCGCCTTGTTGGCTTTTCAGGGTCTTCTTTTCGTCGCAGGTGAGGGCTTGGCAATCCAGTAGGACACGCTGGAGCTGGCCACGGAGAGGGCCACTCGCCAGTTGGAGGTCCAAAAGGCGTGGCGGAAGAAACAGGAGAGGAAGAGGAAATGCTGAAGAAGAGGGAGCTGAGGGAAGCAAATGTGGAATGCATGGCTCATCACTTTCTGATGCTGCAGCACAGCTTGGTGGCCTAATTGGGCTCCTTTCAATCTCTGAGCCTTCGGACGAAAAGGTCAAGCTGGGGAGACGATTCCCGTCGATTCCGTTGGTGGCGGAGGAGGACTCGGCGTCGGTGAGGGAGAATAATCTGGTGGAGCCGGTGGTGAGTGCCGTGGTTGATAAGGCCGGCGCCGGGGAGACGCCGTTGACGGCGGAGGATGTGTTGGAGGCGATTGATAGAGGCGGACCGGAGGCTTTTAGATTCGGAGCTCAGTCGGCGACGTATTGGGTTTGTGTGGTTTGGATTTTGATTTATTACAAAGATTTAACTTGCTTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

209

Amino Acids

22.81

Weight (kDa)

8.59

Isoelectric Point (pI)

60.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05090 AT4G05090
fragaria_vesca	FvH4_3g03790
malus_domestica	MD05G1326400.v1.1 MD10G1304400.v1.1 MD10G1304500.v1.1
prunus_persica	Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1
pyrus_communis	pycom05g30080 pycom10g25690
rosa_chinensis	RchiOBHm_Chr5g0006041
rosa_laevigata	RLG00000031382
rosa_multiflora	Rmu_co8445649.1_g000001 Rmu_sc0004331.1_g000012
rosa_roxburghii	Rroxscaffold_1G00069930
rosa_rugosa	Rorug04G0419400
rosa_samantha	Rh5AG047000 Rh5AG047100 Rh5BG045800 Rh5CG054500 Rh5DG045500
rosa_wichuraiana	Rw5G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	115
AasI	GACNNNNNNGTC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	476
AciI	CCGC	6 cut(s)	40, 89, 210, 401, 500, 531
AcoI	YGGCCR	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	3 cut(s)	416, 477, 488
AfiI	CCNNNNNNNGG	3 cut(s)	173, 192, 480
AgsI	TTSAA	1 cut(s)	336
AhdI	GACNNNNNGTC	1 cut(s)	415
AluBI	AGCT	5 cut(s)	162, 254, 310, 367, 557
AluI	AGCT	5 cut(s)	162, 254, 310, 367, 557
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	367, 479
Ama87I	CYCGRG	1 cut(s)	13
AoxI	GGCC	6 cut(s)	37, 56, 164, 176, 316, 471
ApeKI	GCWGC	5 cut(s)	23, 26, 29, 299, 302
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	3 cut(s)	176, 195, 533
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	3 cut(s)	139, 433, 463
AvaI	CYCGRG	1 cut(s)	13
AvaII	GGWCC	2 cut(s)	195, 533
BalI	TGGCCA	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	476
BanII	GRGCYC	2 cut(s)	330, 559
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	5 cut(s)	10, 13, 16, 286, 314
BccI	CCATC	1 cut(s)	75
BceAI	ACGGC	3 cut(s)	443, 475, 513
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	2 cut(s)	367, 479
BfmI	CTRYAG	1 cut(s)	300
BfoI	RGCGCY	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	97
BisI	GCNGC	6 cut(s)	24, 27, 30, 40, 300, 303
BlsI	GCNGC	6 cut(s)	25, 28, 31, 41, 301, 304
Bme1390I	CCNGG	1 cut(s)	481
Bme18I	GGWCC	2 cut(s)	195, 533
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	13
BmgT120I	GGNCC	3 cut(s)	176, 195, 533
BmiI	GGNNCC	3 cut(s)	329, 444, 478
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	2 cut(s)	27, 286
BpiI	GAAGAC	1 cut(s)	103
BplI	GAGNNNNNCTC	5 cut(s)	28, 165, 197, 395, 427
BpmI	CTGGAG	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	481
BsaHI	GRCGYC	3 cut(s)	416, 477, 488
BsaJI	CCNNGG	3 cut(s)	167, 459, 480
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	4 cut(s)	476, 494, 506, 524
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 192, 480
Bse118I	RCCGGY	2 cut(s)	445, 473
Bse1I	ACTGG	2 cut(s)	144, 186
BseDI	CCNNGG	3 cut(s)	167, 459, 480
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	3 cut(s)	173, 192, 480
BseMII	CTCAG	3 cut(s)	246, 333, 572
BseNI	ACTGG	2 cut(s)	144, 186
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	5 cut(s)	10, 13, 16, 286, 314
BseYI	CCCAGC	1 cut(s)	367
BshFI	GGCC	6 cut(s)	39, 58, 166, 178, 318, 473
BshNI	GGYRCC	1 cut(s)	476
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	13
BsiSI	CCGG	4 cut(s)	446, 474, 480, 536
BslI	CCNNNNNNNGG	3 cut(s)	173, 192, 480
BsmAI	GTCTC	2 cut(s)	367, 479
BsmBI	CGTCTC	2 cut(s)	367, 479
BsmI	GAATGC	1 cut(s)	279
BsnI	GGCC	6 cut(s)	39, 58, 166, 178, 318, 473
BsoBI	CYCGRG	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	330, 559
BspACI	CCGC	6 cut(s)	40, 89, 210, 401, 500, 531
BspANI	GGCC	6 cut(s)	39, 58, 166, 178, 318, 473
BspCNI	CTCAG	3 cut(s)	247, 334, 571
BspLI	GGNNCC	3 cut(s)	329, 444, 478
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	476
BsrFI	RCCGGY	2 cut(s)	445, 473
BsrI	ACTGG	2 cut(s)	144, 186
BssAI	RCCGGY	2 cut(s)	445, 473
BssECI	CCNNGG	3 cut(s)	167, 459, 480
BssNI	GRCGYC	3 cut(s)	416, 477, 488
Bst6I	CTCTTC	2 cut(s)	223, 240
BstACI	GRCGYC	3 cut(s)	416, 477, 488
BstC8I	GCNNGC	2 cut(s)	164, 475
BstDEI	CTNAG	3 cut(s)	255, 342, 558
BstDSI	CCRYGG	2 cut(s)	167, 459
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstMAI	GTCTC	2 cut(s)	367, 479
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 45, 97, 563
BstSCI	CCNGG	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	5 cut(s)	10, 13, 16, 286, 314
BstV2I	GAAGAC	1 cut(s)	103
BsuRI	GGCC	6 cut(s)	39, 58, 166, 178, 318, 473
BtgI	CCRYGG	2 cut(s)	167, 459
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	511
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	164, 475
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	2 cut(s)	445, 473
Cfr13I	GGNCC	3 cut(s)	176, 195, 533
CpoI	CGGWCCG	1 cut(s)	533
CseI	GACGC	2 cut(s)	405, 496
CspCI	CAANNNNNGTGG	2 cut(s)	187, 222
CspI	CGGWCCG	1 cut(s)	533
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	3 cut(s)	255, 342, 558
DinI	GGCGCC	1 cut(s)	478
DrdI	GACNNNNNNGTC	1 cut(s)	359
DriI	GACNNNNNGTC	1 cut(s)	415
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	2 cut(s)	223, 240
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	2 cut(s)	223, 240
EciI	GGCGGA	5 cut(s)	78, 225, 416, 515, 546
Ecl136II	GAGCTC	1 cut(s)	557
Eco24I	GRGCYC	2 cut(s)	330, 559
Eco47I	GGWCC	2 cut(s)	195, 533
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	330, 559
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
Esp3I	CGTCTC	2 cut(s)	367, 479
FaeI	CATG	1 cut(s)	281
FaiI	YATR	1 cut(s)	279
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	6 cut(s)	24, 27, 30, 40, 300, 303
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	2 cut(s)	330, 559
Fsp4HI	GCNGC	6 cut(s)	24, 27, 30, 40, 300, 303
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	6 cut(s)	24, 27, 30, 40, 300, 303
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	6 cut(s)	39, 58, 166, 178, 318, 473
HapII	CCGG	4 cut(s)	446, 474, 480, 536
HgaI	GACGC	2 cut(s)	405, 496
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	3 cut(s)	416, 477, 488
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	5 cut(s)	85, 378, 388, 410, 549
HpaII	CCGG	4 cut(s)	446, 474, 480, 536
HphI	GGTGA	3 cut(s)	139, 433, 463
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	4 cut(s)	295, 343, 352, 554
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	4 cut(s)	124, 388, 421, 571
HpyAV	CCTTC	2 cut(s)	69, 357
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	3 cut(s)	32, 277, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 45, 97, 563
HpyF3I	CTNAG	3 cut(s)	255, 342, 558
HpySE526I	ACGT	1 cut(s)	569
Hsp92I	GRCGYC	3 cut(s)	416, 477, 488
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	477
KasI	GGCGCC	1 cut(s)	476
KroI	GCCGGC	1 cut(s)	473
KroNI	GCCGGC	1 cut(s)	475
LmnI	GCTCC	5 cut(s)	159, 251, 333, 442, 554
Lsp1109I	GCAGC	5 cut(s)	10, 13, 16, 286, 314
LweI	GCATC	2 cut(s)	27, 286
MaeII	ACGT	1 cut(s)	569
MboII	GAAGA	5 cut(s)	103, 225, 240, 254, 257
MhlI	GDGCHC	2 cut(s)	330, 559
MlsI	TGGCCA	1 cut(s)	166
MluCI	AATT	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	166
Mly113I	GGCGCC	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	2 cut(s)	170, 492
Mox20I	TGGCCA	1 cut(s)	166
Mph1103I	ATGCAT	1 cut(s)	279
MroNI	GCCGGC	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	166
MseI	TTAA	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	166
MspI	CCGG	4 cut(s)	446, 474, 480, 536
MspR9I	CCNGG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	29, 45, 97, 563
NaeI	GCCGGC	1 cut(s)	475
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	1 cut(s)	481
NgoMIV	GCCGGC	1 cut(s)	473
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	3 cut(s)	329, 444, 478
NmeAIII	GCCGAG	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	279
PaqCI	CACCTGC	1 cut(s)	115
PctI	GAATGC	1 cut(s)	279
PdiI	GCCGGC	1 cut(s)	475
PfeI	GAWTC	4 cut(s)	85, 378, 388, 549
PkrI	GCNGC	6 cut(s)	25, 28, 31, 41, 301, 304
PleI	GAGTC	1 cut(s)	404
PluTI	GGCGCC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	329, 444, 478
PspPI	GGNCC	3 cut(s)	176, 195, 533
PstI	CTGCAG	1 cut(s)	304
Rsr2I	CGGWCCG	1 cut(s)	533
RsrII	CGGWCCG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	6 cut(s)	24, 27, 30, 40, 300, 303
Sau96I	GGNCC	3 cut(s)	176, 195, 533
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	2 cut(s)	330, 559
SetI	ASST	9 cut(s)	129, 164, 197, 256, 312, 363, 369, 559, 572
SfaNI	GCATC	2 cut(s)	27, 286
SfcI	CTRYAG	1 cut(s)	300
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	2 cut(s)	195, 533
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	6 cut(s)	40, 89, 210, 401, 500, 531
SspDI	GGCGCC	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	1 cut(s)	479
TaiI	ACGT	1 cut(s)	572
TaqI	TCGA	1 cut(s)	386
TasI	AATT	1 cut(s)	321
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	4 cut(s)	85, 378, 388, 549
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TseI	GCWGC	5 cut(s)	23, 26, 29, 299, 302
TspGWI	ACGGA	2 cut(s)	184, 381
VpaK11BI	GGWCC	2 cut(s)	195, 533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.