RLG00000031382

PAP-specific phosphatase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
4577170 .. 4582841
5672 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031382

Sequence Viewer

Length: 1143 bp
ATGCAGCTCCGCCTCCCATTCGCCGCCGAGACCGCCAAGCACTACAGAGAACTCGAAGCCGCCATCGCCGTCGTCGAAACCGCCTCCAACCTCTGCGTCGAGGTCCAAACGGCGTTAGCGTCGAGCGCCGGCGGGGTTCTCGAGAAGAACGACCAGACTCCGGTCACCGTCGCCGATTTCAGCGTCCAGGCGCTGATCAGTTTAGAGCTGGGGAGACGATTCCCGTCGATTCCGTTGGTGGCAGAGGAGGACTCGGCGTCGGTGATTGAGAATAATCTGGTGGAGCCGGTGGTGAGTGCGGTGGTTGATAAGGCCGGAGCCGGGGAAACGCCGTTGACGGCGGAGGATGTGTTGGAGGCGATTGATAGAGGCGGACCGGAGGCTTTTAGATTCGGAGCTCAGCCGGCGACGTATTGGTTACTGGATCCAATTGATGGCACAAGAGGATTTGTGAAGGGGAACAAGGCGTTGTTTGTGGTAGGTTTGGCTCTGGTAGTTGACGGGGAGATTGTATTAGGTGTCATGGGCTGCCCTCACTGGCAGGAATCGAACAAATGTATCAATGGAGTCCAGGAAGAGAAGAGCATTCCATCTGAAACCGGGCTTCTTATGGTCTCTCATATTGGCTGTGGCACGTGGACAAGAAGTTTATCATCTGTGCTAAATGGCACGCCAAAGATCCCTTATTCTTGGACCCGTTGCTTTGTTGATGGCTGTTCTGTGGTGGCTCAGGCACGCTTTTGTATCATAGAGAGTGAACCATGGGAGGCATTGCCACCGTCAGCTTTCTTTACCTCAACAACTAATGCTGATAGTGTTGGTGAGGGTCAAGTTCTCGTTTTGAAACCTTGTTGTGGAAGTTTATGCAAGTATTTATTGGTGGCTTCAGGTAGGGGTTCTGTTTACATTCAGCGACAGAAAGAAAAAGTTATTAAGGCTTGGGATCACGCTGTTGGTATTATTTGTGTGCTTGAAGCAGGGGGAACGGCAACTGACTGGAAAGGGAATCAAGTTGATCTTGCAGCAGATGAAGCCGGACGGAGGAGTATATACCCTCAAGATGGTTTCCTTGTGAGTAATGGCAAGTTACATAACCAGCTTCTGGAACTGATATCTTCCACTTCATCAACAGTTTTAGGCTAG

Protein Analysis

381

Amino Acids

40.45

Weight (kDa)

4.84

Isoelectric Point (pI)

27.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 25 - 372 5.8e-29 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 434, 1102
AciI CCGC 9 cut(s) 10, 24, 33, 60, 81, 132, 299, 341, 372
AclWI GGATC 4 cut(s) 419, 432, 673, 951
AcuI CTGAAG 1 cut(s) 870
AcvI CACGTG 1 cut(s) 636
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 7 cut(s) 160, 321, 434, 854, 1041, 1061, 1102
AgsI TTSAA 2 cut(s) 844, 974
AhdI GACNNNNNGTC 1 cut(s) 256
AjnI CCWGG 2 cut(s) 186, 570
AluBI AGCT 5 cut(s) 7, 208, 398, 785, 1099
AluI AGCT 5 cut(s) 7, 208, 398, 785, 1099
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 3 cut(s) 23, 208, 619
AlwI GGATC 4 cut(s) 419, 432, 673, 951
AlwNI CAGNNNCTG 2 cut(s) 193, 1102
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 3 cut(s) 4, 528, 1022
AspLEI GCGC 2 cut(s) 128, 193
AspS9I GGNCC 3 cut(s) 103, 374, 693
AsuC2I CCSGG 2 cut(s) 322, 601
AsuHPI GGTGA 4 cut(s) 157, 274, 304, 833
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 3 cut(s) 103, 374, 693
BaeI ACNNNNGTAYC 2 cut(s) 541, 574
BamHI GGATCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 400
BbrPI CACGTG 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 16, 515, 1034
BccI CCATC 5 cut(s) 71, 428, 598, 704, 1055
BceAI ACGGC 5 cut(s) 53, 126, 316, 354, 1002
BciT130I CCWGG 2 cut(s) 188, 572
BclI TGATCA 1 cut(s) 195
BcnI CCSGG 2 cut(s) 322, 601
BcoDI GTCTC 3 cut(s) 23, 208, 619
BfaI CTAG 1 cut(s) 1141
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 2 cut(s) 129, 194
BisI GCNGC 5 cut(s) 5, 24, 60, 529, 1023
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 5 cut(s) 6, 25, 61, 530, 1024
Bme1390I CCNGG 4 cut(s) 188, 322, 572, 601
Bme18I GGWCC 3 cut(s) 103, 374, 693
BmeRI GACNNNNNGTC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 3 cut(s) 103, 374, 693
BmiI GGNNCC 4 cut(s) 285, 319, 426, 695
BmrFI CCNGG 4 cut(s) 188, 322, 572, 601
BoxI GACNNNNGTC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bpu10I CCTNAGC 1 cut(s) 729
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 1041
BpuMI CCSGG 2 cut(s) 322, 601
BsaAI YACGTR 1 cut(s) 636
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 2 cut(s) 23, 619
BsaJI CCNNGG 2 cut(s) 321, 761
BsaWI WCCGGW 2 cut(s) 160, 376
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 7 cut(s) 160, 321, 434, 854, 1041, 1061, 1102
Bse118I RCCGGY 3 cut(s) 128, 286, 403
Bse1I ACTGG 3 cut(s) 426, 542, 1001
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 2 cut(s) 188, 572
BseDI CCNNGG 2 cut(s) 321, 761
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 7 cut(s) 160, 321, 434, 854, 1041, 1061, 1102
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 2 cut(s) 413, 743
BseNI ACTGG 3 cut(s) 426, 542, 1001
BseRI GAGGAG 2 cut(s) 260, 1057
BseXI GCAGC 3 cut(s) 16, 515, 1034
BseYI CCCAGC 1 cut(s) 208
BshFI GGCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 9 cut(s) 129, 161, 287, 315, 321, 377, 404, 600, 1035
BslI CCNNNNNNNGG 7 cut(s) 160, 321, 434, 854, 1041, 1061, 1102
BsmAI GTCTC 3 cut(s) 23, 208, 619
BsmBI CGTCTC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 1 cut(s) 314
Bso31I GGTCTC 2 cut(s) 23, 619
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 5 cut(s) 195, 424, 678, 943, 1015
Bsp1720I GCTNAGC 1 cut(s) 399
Bsp19I CCATGG 1 cut(s) 761
BspACI CCGC 9 cut(s) 10, 24, 33, 60, 81, 132, 299, 341, 372
BspANI GGCC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 412, 742
BspLI GGNNCC 4 cut(s) 285, 319, 426, 695
BspPI GGATC 4 cut(s) 419, 432, 673, 951
BspQI GCTCTTC 1 cut(s) 575
BspTNI GGTCTC 2 cut(s) 23, 619
BsrDI GCAATG 1 cut(s) 770
BsrFI RCCGGY 3 cut(s) 128, 286, 403
BsrI ACTGG 3 cut(s) 426, 542, 1001
BssAI RCCGGY 3 cut(s) 128, 286, 403
BssECI CCNNGG 2 cut(s) 321, 761
BssMI GATC 5 cut(s) 195, 424, 678, 943, 1015
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 188, 572
Bst4CI ACNGT 3 cut(s) 169, 780, 1132
Bst6I CTCTTC 2 cut(s) 570, 575
BstACI GRCGYC 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 636
BstC8I GCNNGC 4 cut(s) 130, 405, 671, 736
BstDEI CTNAG 2 cut(s) 399, 729
BstDSI CCRYGG 1 cut(s) 761
BstEII GGTNACC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 352
BstH2I RGCGCY 2 cut(s) 129, 194
BstHHI GCGC 2 cut(s) 128, 193
BstKTI GATC 5 cut(s) 198, 427, 681, 946, 1018
BstMAI GTCTC 3 cut(s) 23, 208, 619
BstMBI GATC 5 cut(s) 195, 424, 678, 943, 1015
BstMWI GCNNNNNNNGC 5 cut(s) 32, 65, 125, 404, 1031
BstNI CCWGG 2 cut(s) 188, 572
BstPAI GACNNNNGTC 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 4 cut(s) 186, 320, 570, 599
BstSFI CTRYAG 1 cut(s) 43
BstV1I GCAGC 3 cut(s) 16, 515, 1034
BstX2I RGATCY 2 cut(s) 424, 678
BstYI RGATCY 2 cut(s) 424, 678
BsuRI GGCC 1 cut(s) 314
BtgI CCRYGG 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 535
Cac8I GCNNGC 4 cut(s) 130, 405, 671, 736
CaiI CAGNNNCTG 2 cut(s) 193, 1102
CfoI GCGC 2 cut(s) 128, 193
Cfr10I RCCGGY 3 cut(s) 128, 286, 403
Cfr13I GGNCC 3 cut(s) 103, 374, 693
CpoI CGGWCCG 1 cut(s) 374
CseI GACGC 4 cut(s) 85, 108, 172, 246
CspI CGGWCCG 1 cut(s) 374
CviAII CATG 2 cut(s) 523, 762
DdeI CTNAG 2 cut(s) 399, 729
DpnI GATC 5 cut(s) 197, 426, 680, 945, 1017
DpnII GATC 5 cut(s) 195, 424, 678, 943, 1015
DriI GACNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 2 cut(s) 570, 575
Eam1105I GACNNNNNGTC 1 cut(s) 256
EarI CTCTTC 2 cut(s) 570, 575
EciI GGCGGA 2 cut(s) 356, 387
Ecl136II GAGCTC 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 761
Eco24I GRGCYC 1 cut(s) 400
Eco31I GGTCTC 2 cut(s) 23, 619
Eco32I GATATC 1 cut(s) 1113
Eco47I GGWCC 3 cut(s) 103, 374, 693
Eco53kI GAGCTC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 870
Eco72I CACGTG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 398
EcoO65I GGTNACC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 186, 570
EcoRV GATATC 1 cut(s) 1113
EcoT14I CCWWGG 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 2 cut(s) 526, 765
FaiI YATR 9 cut(s) 524, 611, 621, 749, 763, 865, 1049, 1051, 1092
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FatI CATG 2 cut(s) 522, 761
FauI CCCGC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 5 cut(s) 5, 24, 60, 529, 1023
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 5 cut(s) 5, 24, 60, 529, 1023
FspBI CTAG 1 cut(s) 1141
GlaI GCGC 2 cut(s) 127, 192
GluI GCNGC 5 cut(s) 5, 24, 60, 529, 1023
GsaI CCCAGC 1 cut(s) 212
HaeII RGCGCY 2 cut(s) 129, 194
HaeIII GGCC 1 cut(s) 314
HapII CCGG 9 cut(s) 129, 161, 287, 315, 321, 377, 404, 600, 1035
HgaI GACGC 4 cut(s) 85, 108, 172, 246
HhaI GCGC 2 cut(s) 128, 193
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 2 cut(s) 526, 765
Hin6I GCGC 2 cut(s) 126, 191
HinP1I GCGC 2 cut(s) 126, 191
HincII GTYRAC 2 cut(s) 336, 499
HindII GTYRAC 2 cut(s) 336, 499
HinfI GANTC 8 cut(s) 157, 219, 229, 251, 390, 545, 567, 1006
HpaII CCGG 9 cut(s) 129, 161, 287, 315, 321, 377, 404, 600, 1035
HphI GGTGA 4 cut(s) 157, 274, 304, 833
Hpy166II GTNNAC 5 cut(s) 336, 499, 639, 758, 904
Hpy188I TCNGA 2 cut(s) 395, 595
Hpy188III TCNNGA 4 cut(s) 140, 142, 1058, 1103
Hpy8I GTNNAC 5 cut(s) 336, 499, 639, 758, 904
Hpy99I CGWCG 8 cut(s) 74, 77, 101, 124, 173, 229, 262, 412
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 3 cut(s) 169, 780, 1132
HpyCH4IV ACGT 2 cut(s) 410, 635
HpyCH4V TGCA 3 cut(s) 4, 867, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 65, 125, 404, 1031
HpyF3I CTNAG 2 cut(s) 399, 729
HpySE526I ACGT 2 cut(s) 410, 635
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 2 cut(s) 526, 765
HspAI GCGC 2 cut(s) 126, 191
KroI GCCGGC 2 cut(s) 128, 403
KroNI GCCGGC 2 cut(s) 130, 405
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 5 cut(s) 195, 424, 678, 943, 1015
LguI GCTCTTC 1 cut(s) 575
LmnI GCTCC 4 cut(s) 12, 283, 317, 395
Lsp1109I GCAGC 3 cut(s) 16, 515, 1034
MaeI CTAG 1 cut(s) 1141
MaeII ACGT 2 cut(s) 410, 635
MaeIII GTNAC 3 cut(s) 163, 417, 1086
MalI GATC 5 cut(s) 197, 426, 680, 945, 1017
MboI GATC 5 cut(s) 195, 424, 678, 943, 1015
MboII GAAGA 4 cut(s) 157, 587, 592, 1107
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 2 cut(s) 424, 678
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 1 cut(s) 429
MlyI GAGTC 3 cut(s) 151, 245, 576
MmeI TCCRAC 2 cut(s) 111, 333
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 2 cut(s) 128, 403
MseI TTAA 1 cut(s) 933
MspI CCGG 9 cut(s) 129, 161, 287, 315, 321, 377, 404, 600, 1035
MspR9I CCNGG 4 cut(s) 188, 322, 572, 601
MunI CAATTG 1 cut(s) 429
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 188, 572
MwoI GCNNNNNNNGC 5 cut(s) 32, 65, 125, 404, 1031
NaeI GCCGGC 2 cut(s) 130, 405
NciI CCSGG 2 cut(s) 322, 601
NcoI CCATGG 1 cut(s) 761
NdeII GATC 5 cut(s) 195, 424, 678, 943, 1015
NgoMIV GCCGGC 2 cut(s) 128, 403
NlaIII CATG 2 cut(s) 526, 765
NlaIV GGNNCC 4 cut(s) 285, 319, 426, 695
NmeAIII GCCGAG 2 cut(s) 52, 233
NmuCI GTSAC 1 cut(s) 163
PaeR7I CTCGAG 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 116, 147
PctI GAATGC 1 cut(s) 585
PdiI GCCGGC 2 cut(s) 130, 405
PfeI GAWTC 5 cut(s) 219, 229, 390, 545, 1006
PflMI CCANNNNNTGG 2 cut(s) 434, 1102
PfoI TCCNGGA 1 cut(s) 570
PkrI GCNGC 5 cut(s) 6, 25, 61, 530, 1024
PleI GAGTC 3 cut(s) 151, 245, 575
PmaCI CACGTG 1 cut(s) 636
PmlI CACGTG 1 cut(s) 636
PpsI GAGTC 3 cut(s) 151, 245, 575
Ppu21I YACGTR 1 cut(s) 636
PshAI GACNNNNGTC 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 400
Psp6I CCWGG 2 cut(s) 186, 570
PspCI CACGTG 1 cut(s) 636
PspEI GGTNACC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 186, 570
PspN4I GGNNCC 4 cut(s) 285, 319, 426, 695
PspPI GGNCC 3 cut(s) 103, 374, 693
PstNI CAGNNNCTG 2 cut(s) 193, 1102
PsuI RGATCY 2 cut(s) 424, 678
Rsr2I CGGWCCG 1 cut(s) 374
RsrII CGGWCCG 1 cut(s) 374
SacI GAGCTC 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 575
SaqAI TTAA 1 cut(s) 933
SatI GCNGC 5 cut(s) 5, 24, 60, 529, 1023
Sau3AI GATC 5 cut(s) 195, 424, 678, 943, 1015
Sau96I GGNCC 3 cut(s) 103, 374, 693
SchI GAGTC 3 cut(s) 151, 245, 576
ScrFI CCNGG 4 cut(s) 188, 322, 572, 601
SduI GDGCHC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 140
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 3 cut(s) 103, 374, 693
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 2 cut(s) 140, 1056
SmoI CTYRAG 2 cut(s) 140, 1056
Sse9I AATT 1 cut(s) 429
SsiI CCGC 9 cut(s) 10, 24, 33, 60, 81, 132, 299, 341, 372
SspMI CTAG 1 cut(s) 1141
SstI GAGCTC 1 cut(s) 400
StyD4I CCNGG 4 cut(s) 186, 320, 570, 599
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 3 cut(s) 169, 780, 1132
TaiI ACGT 2 cut(s) 413, 638
TaqI TCGA 7 cut(s) 54, 75, 99, 122, 141, 227, 548
TasI AATT 1 cut(s) 429
TauI GCSGC 2 cut(s) 26, 62
TfiI GAWTC 5 cut(s) 219, 229, 390, 545, 1006
Tru1I TTAA 1 cut(s) 933
Tru9I TTAA 1 cut(s) 933
TscAI CASTG 1 cut(s) 542
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 3 cut(s) 4, 528, 1022
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 1044, 1113
TspGWI ACGGA 2 cut(s) 222, 1054
TspRI CASTG 1 cut(s) 542
Van91I CCANNNNNTGG 2 cut(s) 434, 1102
VpaK11BI GGWCC 3 cut(s) 103, 374, 693
XhoI CTCGAG 1 cut(s) 140
XspI CTAG 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.