Rh5AG047000

PAP-specific phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007801
Physical Location & Seq
Reverse (-)
3931544 .. 3933688
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG047000.1

Sequence Viewer

Length: 732 bp
ATGCAGTTACTGGATCCAATTGATGGCACAAGAGGATTTGTGAAGGGGAACAAGGCGTTGTTTGTGGTAGGTTTGGCTCTTGTAGTTGACGGGGAGATTGTATTAGGTGTCATGGGCTGCCCGCACTGGCAGGAATCGAACAAATGTATCAATGGAGTCCAGGAAGAGAAGAGCATTCCATCTGAAACAGGGCTTCTTATGGTCTCTCATATTGGTTGTGGCACGTGGACAAGAAGTTTATCATCTGTGCTAAATGGCACGCCAAAGATTCCTTATTCTTGGACCCGTTGCTTTGTTGATGGCTGTTCTGTGGTGGCTCAGGCACGCTTTTGTATCATAGAGAGTGAGCCATGGGAGGCATTGCCACCGTCAGCTTTCTTTACCTCAACAACTAATGCTGATAGTGTTGGTGAGGGTCAAGTTCTCGTTTTGAAACCTTGTTGTGGAAGTTTATGCAAGTATTTATTGGTGGCTTCAGGTAGGGGTTCTGTCTTCATTCAGCGACAGAAAGAAAAAGTTATTAAGGCTTGGGATCACGCTGTTGGTATTATATGTGTGCTTGAAGCAGGGGGAAGGGCAACTGACTGGAAAGGGAATCAAGTTGATCTTGCAGCAGATGAAGCCGGACGGAGGAGTATATACCCTCAAGATGGTATCCTTGTGAGTAATGGCAAATTACATAACCAGCTTCTGGAACTGATATCTTCCACTTCATCAACAGTTTTAGGCTAG

Protein Analysis

243

Amino Acids

26.04

Weight (kDa)

6.09

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 3 - 235 1.6e-23 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 23, 691
AciI CCGC 1 cut(s) 122
AclWI GGATC 3 cut(s) 8, 21, 540
AcuI CTGAAG 1 cut(s) 459
AcvI CACGTG 1 cut(s) 225
AfiI CCNNNNNNNGG 5 cut(s) 23, 443, 630, 650, 691
AgsI TTSAA 2 cut(s) 433, 563
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 374, 688
AluI AGCT 2 cut(s) 374, 688
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 3 cut(s) 8, 21, 540
AlwNI CAGNNNCTG 2 cut(s) 10, 691
ApeKI GCWGC 2 cut(s) 117, 611
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 282
BaeI ACNNNNGTAYC 2 cut(s) 130, 163
BamHI GGATCC 1 cut(s) 13
BbrPI CACGTG 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 104, 623
BccI CCATC 4 cut(s) 17, 187, 293, 644
BciT130I CCWGG 1 cut(s) 161
BciVI GTATCC 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 208
BfaI CTAG 1 cut(s) 730
BfuI GTATCC 1 cut(s) 665
BisI GCNGC 2 cut(s) 118, 612
BlsI GCNGC 2 cut(s) 119, 613
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 2 cut(s) 15, 284
BmrFI CCNGG 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 484
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 443, 630, 650, 691
Bse1I ACTGG 3 cut(s) 15, 131, 590
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 350
BseLI CCNNNNNNNGG 5 cut(s) 23, 443, 630, 650, 691
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 3 cut(s) 15, 131, 590
BseRI GAGGAG 1 cut(s) 646
BseXI GCAGC 2 cut(s) 104, 623
BsiSI CCGG 1 cut(s) 624
BslI CCNNNNNNNGG 5 cut(s) 23, 443, 630, 650, 691
BsmAI GTCTC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 174
Bso31I GGTCTC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 13, 532, 604
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 15, 284
BspPI GGATC 3 cut(s) 8, 21, 540
BspQI GCTCTTC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 3 cut(s) 15, 131, 590
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 3 cut(s) 13, 532, 604
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 2 cut(s) 369, 721
Bst6I CTCTTC 2 cut(s) 159, 164
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 122, 260, 325
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 350
BstKTI GATC 3 cut(s) 16, 535, 607
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 13, 532, 604
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 104, 623
BstV2I GAAGAC 1 cut(s) 484
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuI GTATCC 1 cut(s) 665
BtgI CCRYGG 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 122, 260, 325
CaiI CAGNNNCTG 2 cut(s) 10, 691
Cfr13I GGNCC 1 cut(s) 282
CviAII CATG 2 cut(s) 112, 351
DdeI CTNAG 1 cut(s) 318
DpnI GATC 3 cut(s) 15, 534, 606
DpnII GATC 3 cut(s) 13, 532, 604
Eam1104I CTCTTC 2 cut(s) 159, 164
EarI CTCTTC 2 cut(s) 159, 164
Eco130I CCWWGG 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 208
Eco32I GATATC 1 cut(s) 702
Eco47I GGWCC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 459
Eco72I CACGTG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 2 cut(s) 115, 354
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FatI CATG 2 cut(s) 111, 350
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 118, 612
Fsp4HI GCNGC 2 cut(s) 118, 612
FspBI CTAG 1 cut(s) 730
GluI GCNGC 2 cut(s) 118, 612
HapII CCGG 1 cut(s) 624
Hin1II CATG 2 cut(s) 115, 354
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 4 cut(s) 134, 156, 268, 595
HpaII CCGG 1 cut(s) 624
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 88, 228
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 647, 692
Hpy8I GTNNAC 2 cut(s) 88, 228
HpyAV CCTTC 2 cut(s) 37, 567
HpyCH4III ACNGT 2 cut(s) 369, 721
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 4, 456, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 2 cut(s) 115, 354
Kzo9I GATC 3 cut(s) 13, 532, 604
LguI GCTCTTC 1 cut(s) 164
Lsp1109I GCAGC 2 cut(s) 104, 623
MaeI CTAG 1 cut(s) 730
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 6
MalI GATC 3 cut(s) 15, 534, 606
MboI GATC 3 cut(s) 13, 532, 604
MboII GAAGA 4 cut(s) 176, 181, 484, 696
MfeI CAATTG 1 cut(s) 18
MflI RGATCY 1 cut(s) 13
MluCI AATT 2 cut(s) 18, 674
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 6 cut(s) 26, 349, 394, 406, 624, 654
MseI TTAA 1 cut(s) 522
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 620
NcoI CCATGG 1 cut(s) 350
NdeII GATC 3 cut(s) 13, 532, 604
NlaIII CATG 2 cut(s) 115, 354
NlaIV GGNNCC 2 cut(s) 15, 284
PciSI GCTCTTC 1 cut(s) 164
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 134, 268, 595
PflMI CCANNNNNTGG 2 cut(s) 23, 691
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 2 cut(s) 119, 613
PleI GAGTC 1 cut(s) 164
PmaCI CACGTG 1 cut(s) 225
PmlI CACGTG 1 cut(s) 225
PpsI GAGTC 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 159
PspCI CACGTG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 15, 284
PspPI GGNCC 1 cut(s) 282
PstNI CAGNNNCTG 2 cut(s) 10, 691
PsuI RGATCY 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 2 cut(s) 118, 612
Sau3AI GATC 3 cut(s) 13, 532, 604
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 161
SetI ASST 8 cut(s) 73, 109, 227, 376, 386, 439, 481, 690
SinI GGWCC 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
Sse9I AATT 2 cut(s) 18, 674
SsiI CCGC 1 cut(s) 122
SspMI CTAG 1 cut(s) 730
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 369, 721
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 137
TasI AATT 2 cut(s) 18, 674
TfiI GAWTC 3 cut(s) 134, 268, 595
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 1 cut(s) 131
TseI GCWGC 2 cut(s) 117, 611
TspDTI ATGAA 3 cut(s) 484, 633, 702
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 1 cut(s) 131
Van91I CCANNNNNTGG 2 cut(s) 23, 691
VpaK11BI GGWCC 1 cut(s) 282
XspI CTAG 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.