Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007801

Physical Location & Seq

Genomic Coordinates Forward (+)

27227228 .. 27230204

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25690.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGATTCTCGTCCACTCAGCCCGCCATTTTACGACTGCAAGATTCACTCAGCCAGATTCGGCCCTCCCGCGGCGGCGCTTCCGCGTGAGGTCGAGTTTGCCGTTCGGTACTGAAAAGGCCAACTACTATCGAGAGCTGGAAGCTGCCGTCGATGTCGTGGAGAGAGCTTGCGCGCTGTGCGTTGACATCCAGTCGTCGGTGCTATCAACTCAACGGCGGATCGTTGAAAAGAGCGACCAGACTCCGGTGACGGTGGCGGATTTTGGAGTCCAGGCCCTCGTCAGTTTGGAGCTTGGGAAACGATTCCCTTTGATTCCATTGGTAGCGGAAGAAGACTCCGCGTTTGTACGGTCGAATAATCTGGTGGAGCCGGTGCTCAATGCGGTGCTTGACAAATCTAGTATTGGAGAGAACCCATGGACGGCTGATGAAGTATTGGAAGCCATTGACAGAGGGGGTCCAGAGGGTTTTGCTTTCGGAGCTCAGCCCGCCACTTATTGGGTACTTGACCCCATTGATGGCACAAAAGGATTTGTGGAGGGAAATCCGGCGTTATATGTGGTTGGCTTGGCACTTGTTGTTGATGGAGAGGTTGTATTGGGTGTCATGGGCTGCCCGAACTGGAAGAATGATATATCGAACAAATCCGCCTCTGAAGTCCAGGAAGAAAAAAGCAGTCCACCTGGATCAGGGATTATTATGGTTGCACATACAGGCTGTGGCACGTGGACAAAACGTTTGTCATCTGTTGTAAATTCCACAGCCAAAATGCCTTATTCATGGACACGATGCTTTGTTGATGGGTCTTGTATCGTGGAAGAGGCACGATTTTCTATCACAGATAGTGATGTATGGGAGTCATTTCCGCTATCATCTTTATTCAGCTCCACAACTAATGCTGATTGCATTGATGAGTGCGAAATTCTTCTTGTAAAATCTTGTTGTGGAAGTTTATCCAAGTATATAATGGTGGCTTCAGGTGTGGCATCTCTTCATATGCAGCGTGTGAAAGTTCATAAAATTATCAAGGCTTGGGATCACGCTGTTGGTGTTATATGTGTGCATGAAGCGGGGGGAAAGGTGACTGACTGGAAGGGAGATGAACTTAATCTAGCAGCAGATGAAGTTGGACGGAGGAATATATACCCTTCCGGTGGAATCCTTGTGACTAATAGCACCTTGCATAACCGGCTTGTCGAGATGATATCTTCCAGTTCGTCCACTGTTTCGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

412

Amino Acids

44.62

Weight (kDa)

5.4

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05090 AT4G05090
fragaria_vesca	FvH4_3g03790
malus_domestica	MD05G1326400.v1.1 MD10G1304400.v1.1 MD10G1304500.v1.1
prunus_persica	Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1
pyrus_communis	pycom05g30080 pycom10g25690
rosa_chinensis	RchiOBHm_Chr5g0006041
rosa_laevigata	RLG00000031382
rosa_multiflora	Rmu_co8445649.1_g000001 Rmu_sc0004331.1_g000012
rosa_roxburghii	Rroxscaffold_1G00069930
rosa_rugosa	Rorug04G0419400
rosa_samantha	Rh5AG047000 Rh5AG047100 Rh5BG045800 Rh5CG054500 Rh5DG045500
rosa_wichuraiana	Rw5G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccII	CGCG	5 cut(s)	70, 84, 173, 341, 1231
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	3 cut(s)	227, 694, 1044
AcsI	RAATTY	2 cut(s)	754, 921
AcuI	CTGAAG	2 cut(s)	675, 960
AcvI	CACGTG	1 cut(s)	726
AfaI	GTAC	3 cut(s)	109, 348, 504
AfiI	CCNNNNNNNGG	8 cut(s)	69, 196, 244, 421, 498, 518, 689, 1154
AgsI	TTSAA	1 cut(s)	227
AhdI	GACNNNNNGTC	1 cut(s)	190
AjnI	CCWGG	3 cut(s)	270, 660, 682
AluBI	AGCT	6 cut(s)	136, 143, 167, 292, 482, 885
AluI	AGCT	6 cut(s)	136, 143, 167, 292, 482, 885
Alw21I	GWGCWC	2 cut(s)	378, 484
AlwI	GGATC	3 cut(s)	227, 694, 1044
AoxI	GGCC	3 cut(s)	60, 117, 273
ApeKI	GCWGC	4 cut(s)	143, 612, 1000, 1115
ApoI	RAATTY	2 cut(s)	754, 921
ArsI	GACNNNNNNTTYG	6 cut(s)	326, 358, 721, 725, 753, 757
Asp700I	GAANNNNTTC	2 cut(s)	302, 924
AspLEI	GCGC	3 cut(s)	78, 173, 175
AspS9I	GGNCC	3 cut(s)	61, 274, 458
AsuHPI	GGTGA	2 cut(s)	259, 1093
AvaII	GGWCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	484
BbrPI	CACGTG	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	378, 484
BbvI	GCAGC	4 cut(s)	130, 599, 1012, 1127
BccI	CCATC	3 cut(s)	512, 578, 794
BceAI	ACGGC	4 cut(s)	85, 131, 230, 438
BciT130I	CCWGG	3 cut(s)	272, 662, 684
BfaI	CTAG	2 cut(s)	399, 1112
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	6 cut(s)	71, 74, 144, 613, 1001, 1116
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	6 cut(s)	72, 75, 145, 614, 1002, 1117
Bme1390I	CCNGG	3 cut(s)	272, 662, 684
Bme18I	GGWCC	1 cut(s)	458
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	61, 274, 458
BmiI	GGNNCC	2 cut(s)	369, 459
BmrFI	CCNGG	3 cut(s)	272, 662, 684
BmsI	GCATC	2 cut(s)	779, 995
BpiI	GAAGAC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	726
BsaJI	CCNNGG	2 cut(s)	68, 416
BsaWI	WCCGGW	2 cut(s)	244, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	8 cut(s)	69, 196, 244, 421, 498, 518, 689, 1154
Bse118I	RCCGGY	2 cut(s)	370, 1188
Bse1I	ACTGG	4 cut(s)	190, 626, 1094, 1212
BseBI	CCWGG	3 cut(s)	272, 662, 684
BseDI	CCNNGG	2 cut(s)	68, 416
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	8 cut(s)	69, 196, 244, 421, 498, 518, 689, 1154
BseMII	CTCAG	3 cut(s)	30, 62, 497
BseNI	ACTGG	4 cut(s)	190, 626, 1094, 1212
BsePI	GCGCGC	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	130, 599, 1012, 1127
Bsh1236I	CGCG	5 cut(s)	70, 84, 173, 341, 1231
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	3 cut(s)	62, 119, 275
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	378, 484
BsiSI	CCGG	5 cut(s)	245, 371, 548, 1152, 1189
BslI	CCNNNNNNNGG	8 cut(s)	69, 196, 244, 421, 498, 518, 689, 1154
BsnI	GGCC	3 cut(s)	62, 119, 275
Bsp1286I	GDGCHC	2 cut(s)	378, 484
Bsp143I	GATC	3 cut(s)	219, 686, 1036
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	416
BspANI	GGCC	3 cut(s)	62, 119, 275
BspCNI	CTCAG	3 cut(s)	29, 61, 496
BspFNI	CGCG	5 cut(s)	70, 84, 173, 341, 1231
BspLI	GGNNCC	2 cut(s)	369, 459
BspPI	GGATC	3 cut(s)	227, 694, 1044
BsrFI	RCCGGY	2 cut(s)	370, 1188
BsrI	ACTGG	4 cut(s)	190, 626, 1094, 1212
BssAI	RCCGGY	2 cut(s)	370, 1188
BssECI	CCNNGG	2 cut(s)	68, 416
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	3 cut(s)	219, 686, 1036
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	272, 662, 684
Bst4CI	ACNGT	3 cut(s)	253, 351, 1225
Bst6I	CTCTTC	2 cut(s)	813, 996
BstBAI	YACGTR	1 cut(s)	726
BstC8I	GCNNGC	4 cut(s)	22, 169, 173, 489
BstDEI	CTNAG	3 cut(s)	16, 48, 483
BstDSI	CCRYGG	2 cut(s)	68, 416
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	5 cut(s)	70, 84, 173, 341, 1231
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	3 cut(s)	78, 173, 175
BstKTI	GATC	3 cut(s)	222, 689, 1039
BstMBI	GATC	3 cut(s)	219, 686, 1036
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 479, 488, 1189
BstNI	CCWGG	3 cut(s)	272, 662, 684
BstSCI	CCNGG	3 cut(s)	270, 660, 682
BstUI	CGCG	5 cut(s)	70, 84, 173, 341, 1231
BstV1I	GCAGC	4 cut(s)	130, 599, 1012, 1127
BstV2I	GAAGAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	62, 119, 275
BtgI	CCRYGG	2 cut(s)	68, 416
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	1221
Cac8I	GCNNGC	4 cut(s)	22, 169, 173, 489
CfoI	GCGC	3 cut(s)	78, 173, 175
Cfr10I	RCCGGY	2 cut(s)	370, 1188
Cfr13I	GGNCC	3 cut(s)	61, 274, 458
Cfr42I	CCGCGG	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	108, 347, 503
CviAII	CATG	4 cut(s)	417, 607, 780, 1064
CviQI	GTAC	3 cut(s)	108, 347, 503
DdeI	CTNAG	3 cut(s)	16, 48, 483
DpnI	GATC	3 cut(s)	221, 688, 1038
DpnII	GATC	3 cut(s)	219, 686, 1036
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	813, 996
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	2 cut(s)	813, 996
EciI	GGCGGA	3 cut(s)	232, 272, 637
Ecl136II	GAGCTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	1206
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	482
Eco57I	CTGAAG	2 cut(s)	675, 960
Eco72I	CACGTG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	3 cut(s)	270, 660, 682
EcoRV	GATATC	1 cut(s)	1206
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	4 cut(s)	420, 610, 783, 1067
FatI	CATG	4 cut(s)	416, 606, 779, 1063
FauI	CCCGC	4 cut(s)	29, 75, 496, 1063
FauNDI	CATATG	1 cut(s)	996
Fnu4HI	GCNGC	6 cut(s)	71, 74, 144, 613, 1001, 1116
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	6 cut(s)	71, 74, 144, 613, 1001, 1116
FspBI	CTAG	2 cut(s)	399, 1112
GlaI	GCGC	3 cut(s)	77, 172, 174
GluI	GCNGC	6 cut(s)	71, 74, 144, 613, 1001, 1116
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	62, 119, 275
HapII	CCGG	5 cut(s)	245, 371, 548, 1152, 1189
HhaI	GCGC	3 cut(s)	78, 173, 175
Hin1II	CATG	4 cut(s)	420, 610, 783, 1067
Hin6I	GCGC	3 cut(s)	76, 171, 173
HinP1I	GCGC	3 cut(s)	76, 171, 173
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HpaII	CCGG	5 cut(s)	245, 371, 548, 1152, 1189
HphI	GGTGA	2 cut(s)	259, 1093
Hpy166II	GTNNAC	5 cut(s)	13, 184, 680, 729, 1221
Hpy188I	TCNGA	2 cut(s)	479, 655
Hpy188III	TCNNGA	3 cut(s)	131, 461, 1198
Hpy8I	GTNNAC	5 cut(s)	13, 184, 680, 729, 1221
Hpy99I	CGWCG	2 cut(s)	152, 199
HpyAV	CCTTC	2 cut(s)	1087, 1158
HpyCH4III	ACNGT	3 cut(s)	253, 351, 1225
HpyCH4IV	ACGT	2 cut(s)	725, 736
HpyCH4V	TGCA	6 cut(s)	38, 707, 906, 1000, 1063, 1183
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 479, 488, 1189
HpyF3I	CTNAG	3 cut(s)	16, 48, 483
HpySE526I	ACGT	2 cut(s)	725, 736
Hsp92II	CATG	4 cut(s)	420, 610, 783, 1067
HspAI	GCGC	3 cut(s)	76, 171, 173
KspI	CCGCGG	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	219, 686, 1036
LmnI	GCTCC	4 cut(s)	289, 367, 479, 890
Lsp1109I	GCAGC	4 cut(s)	130, 599, 1012, 1127
LweI	GCATC	2 cut(s)	779, 995
MaeI	CTAG	2 cut(s)	399, 1112
MaeII	ACGT	2 cut(s)	725, 736
MaeIII	GTNAC	3 cut(s)	247, 1081, 1165
MalI	GATC	3 cut(s)	221, 688, 1038
MboI	GATC	3 cut(s)	219, 686, 1036
MboII	GAAGA	8 cut(s)	341, 344, 637, 677, 830, 917, 983, 1200
MhlI	GDGCHC	2 cut(s)	378, 484
MluCI	AATT	3 cut(s)	754, 921, 1020
MlyI	GAGTC	4 cut(s)	235, 276, 329, 866
MmeI	TCCRAC	1 cut(s)	1108
MroXI	GAANNNNTTC	2 cut(s)	302, 924
MseI	TTAA	1 cut(s)	1107
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	5 cut(s)	245, 371, 548, 1152, 1189
MspR9I	CCNGG	3 cut(s)	272, 662, 684
MvaI	CCWGG	3 cut(s)	272, 662, 684
MvnI	CGCG	5 cut(s)	70, 84, 173, 341, 1231
MwoI	GCNNNNNNNGC	4 cut(s)	177, 479, 488, 1189
NcoI	CCATGG	1 cut(s)	416
NdeI	CATATG	1 cut(s)	996
NdeII	GATC	3 cut(s)	219, 686, 1036
NlaIII	CATG	4 cut(s)	420, 610, 783, 1067
NlaIV	GGNNCC	2 cut(s)	369, 459
NmuCI	GTSAC	3 cut(s)	247, 1081, 1165
PauI	GCGCGC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PdmI	GAANNNNTTC	2 cut(s)	302, 924
PfeI	GAWTC	6 cut(s)	4, 42, 56, 303, 313, 1158
PflMI	CCANNNNNTGG	1 cut(s)	498
PfoI	TCCNGGA	1 cut(s)	660
PkrI	GCNGC	6 cut(s)	72, 75, 145, 614, 1002, 1117
PleI	GAGTC	4 cut(s)	235, 275, 329, 865
PmaCI	CACGTG	1 cut(s)	726
PmlI	CACGTG	1 cut(s)	726
PpsI	GAGTC	4 cut(s)	235, 275, 329, 865
Ppu21I	YACGTR	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	484
Psp1406I	AACGTT	1 cut(s)	736
Psp6I	CCWGG	3 cut(s)	270, 660, 682
PspCI	CACGTG	1 cut(s)	726
PspGI	CCWGG	3 cut(s)	270, 660, 682
PspN4I	GGNNCC	2 cut(s)	369, 459
PspPI	GGNCC	3 cut(s)	61, 274, 458
PteI	GCGCGC	1 cut(s)	171
RsaI	GTAC	3 cut(s)	109, 348, 504
RsaNI	GTAC	3 cut(s)	108, 347, 503
SacI	GAGCTC	1 cut(s)	484
SacII	CCGCGG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	1107
SatI	GCNGC	6 cut(s)	71, 74, 144, 613, 1001, 1116
Sau3AI	GATC	3 cut(s)	219, 686, 1036
Sau96I	GGNCC	3 cut(s)	61, 274, 458
SchI	GAGTC	4 cut(s)	235, 276, 329, 866
ScrFI	CCNGG	3 cut(s)	272, 662, 684
SduI	GDGCHC	2 cut(s)	378, 484
SfaNI	GCATC	2 cut(s)	779, 995
Sfr303I	CCGCGG	1 cut(s)	71
SgrBI	CCGCGG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	458
Sse9I	AATT	3 cut(s)	754, 921, 1020
SspMI	CTAG	2 cut(s)	399, 1112
SstI	GAGCTC	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	270, 660, 682
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	3 cut(s)	253, 351, 1225
TaiI	ACGT	2 cut(s)	728, 739
TaqI	TCGA	6 cut(s)	92, 130, 150, 353, 638, 1197
TasI	AATT	3 cut(s)	754, 921, 1020
TauI	GCSGC	2 cut(s)	73, 76
TfiI	GAWTC	6 cut(s)	4, 42, 56, 303, 313, 1158
Tru1I	TTAA	1 cut(s)	1107
Tru9I	TTAA	1 cut(s)	1107
TscAI	CASTG	1 cut(s)	1228
TseFI	GTSAC	3 cut(s)	247, 1081, 1165
TseI	GCWGC	4 cut(s)	143, 612, 1000, 1115
Tsp45I	GTSAC	3 cut(s)	247, 1081, 1165
TspDTI	ATGAA	7 cut(s)	444, 768, 983, 1004, 1080, 1116, 1137
TspGWI	ACGGA	1 cut(s)	1147
TspRI	CASTG	1 cut(s)	1228
Van91I	CCANNNNNTGG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	458
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	2 cut(s)	754, 921
XcmI	CCANNNNNNNNNTGG	1 cut(s)	964
XmnI	GAANNNNTTC	2 cut(s)	302, 924
XspI	CTAG	2 cut(s)	399, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.