RchiOBHm_Chr5g0006041

PAP-specific phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
3806829 .. 3810153
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28719

Sequence Viewer

Length: 1281 bp
ATGATTCTCGCCCACTCCTCCCGCCATTTCTCCACCGTCCGATTCACCCTCTCCACCTCATCTTCCCCTGCGCCTCCCCACACCCGAACTCTCACCTTCACCTCCACCTCTCTCCGCTGCCGCCTCTCCAATTTCAAATGCAGCTCCCGCCTCCCATTCGCCGCTGAGGCCGCCAAGCACTACAGAGAACTCGAAGCCGCCATCGCCGTCGTCGAAACCGCCTCCAACCTCTGCGTCGAGGTCCAAACGGCGTTGGCGTCGAGCGCCGGCGGGGTTCTCGAGAAGAACGACCAGACTCCGGTCACCGTCGCCGATTTCAGCGTCCAGGCGCTGATAAGTTTAGAGCTGGGGAGACGATTCCCGTCGATTCCGTTGGTGGCGGAGGAGGACTCGGCGTCGGTGAGGGAGAATAATCTGGTGGAGCCGGTGGTGAGTGCCGTGGTTGATAAGGCCGGCGCCGGGGAAACGCCGTTGACGGCGGAGGATGTGTTGGAGGCGATTGATAGAGGCGGACCGGAGGCTTTTAGATTCGGAGCTCAGCCGGCGACGTATTGGTTACTGGATCCAATTGATGGCACAAGAGGATTTGTGAATGGGAACAAGGCGTTGTTTGTGGTAGGTTTGGCTCTTGTAGTTGACGGGGAGATTGTATTAGGTGTCATGGGCTGCCCGCACTGGCAGGAATCGAACAAATGTATCAATGGAGTCCAGGAAGAGAAGAGCATTCCATCTGAAACAGGGCTTCTTATGGTCTCTCATATTGGTTGTGGCACATGGACAAGAAGTTTATCATCTGTGCTAAATGGCACGCCAAAGATTCCTTATTCTTGGACCCGTTGCTTTGTTGATGGCTCTTCTGTGGTGGCTCAGGCACGCTTTTGTATCATACAGAGTGAGCCATGGGAGGCATTGCCACCGTCAGCTTTCTTTACCTCAACAACTAATGCTGATAGTGTTGGTGAGGGTCAAGTTCTCGTTTTGAAACCTTGTTGTGGAAGTTTATGCAAGTATTTATTGGTGGCTTCAGGTAGGGGTTCTGTTTTCATTCAGCGACAGAAAGAAAAAGTTATTAAGGCTTGGGATCACGCTGTTGGTATTATATGTGTGCTTGAAGCAGGGGGAAGGGCAACTGACTGGAAAGGGAATCAAGTTGATCTTGCAGCAGATGAAGCCGGACGGAGGAGTATATACCCTCAAGATGGTATCCTTGTGAGTAATGGCAAATTACATAACCAGCTTCTGGAACTGATATCTTCCACTTCATCAACAGTTTTAGGCTAG

Protein Analysis

426

Amino Acids

45.49

Weight (kDa)

5.7

Isoelectric Point (pI)

30.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 76 - 418 1.1e-28 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccB7I CCANNNNNTGG 2 cut(s) 572, 1240
AclWI GGATC 3 cut(s) 557, 570, 1089
AcuI CTGAAG 1 cut(s) 1008
AcyI GRCGYC 3 cut(s) 257, 395, 456
AfiI CCNNNNNNNGG 7 cut(s) 298, 459, 572, 992, 1179, 1199, 1240
AgsI TTSAA 3 cut(s) 136, 982, 1112
AhdI GACNNNNNGTC 1 cut(s) 394
AjnI CCWGG 2 cut(s) 324, 708
AluBI AGCT 5 cut(s) 144, 346, 536, 923, 1237
AluI AGCT 5 cut(s) 144, 346, 536, 923, 1237
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 2 cut(s) 346, 757
AlwI GGATC 3 cut(s) 557, 570, 1089
AlwNI CAGNNNCTG 2 cut(s) 331, 1240
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 2 cut(s) 168, 450
ApeKI GCWGC 4 cut(s) 117, 141, 666, 1160
AspLEI GCGC 4 cut(s) 73, 266, 331, 458
AspS9I GGNCC 3 cut(s) 241, 512, 831
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 7 cut(s) 37, 85, 91, 295, 412, 442, 971
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 3 cut(s) 241, 512, 831
BaeI ACNNNNGTAYC 2 cut(s) 679, 712
BamHI GGATCC 1 cut(s) 562
BanI GGYRCC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 538
Bbv12I GWGCWC 1 cut(s) 538
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 104, 153, 653, 1172
BccI CCATC 5 cut(s) 209, 566, 736, 842, 1193
BceAI ACGGC 5 cut(s) 191, 264, 422, 454, 492
BciT130I CCWGG 2 cut(s) 326, 710
BciVI GTATCC 1 cut(s) 1214
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 346, 757
BfaI CTAG 1 cut(s) 1279
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 3 cut(s) 267, 332, 459
BfuI GTATCC 1 cut(s) 1214
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 8 cut(s) 118, 121, 142, 162, 171, 198, 667, 1161
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 8 cut(s) 119, 122, 143, 163, 172, 199, 668, 1162
Bme1390I CCNGG 3 cut(s) 326, 460, 710
Bme18I GGWCC 3 cut(s) 241, 512, 831
BmeRI GACNNNNNGTC 1 cut(s) 394
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 241, 512, 831
BmiI GGNNCC 4 cut(s) 423, 457, 564, 833
BmrFI CCNGG 3 cut(s) 326, 460, 710
BoxI GACNNNNGTC 1 cut(s) 299
BplI GAGNNNNNCTC 2 cut(s) 374, 406
Bpu10I CCTNAGC 2 cut(s) 165, 867
Bpu1102I GCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 1179
BpuMI CCSGG 1 cut(s) 460
BsaHI GRCGYC 3 cut(s) 257, 395, 456
BsaI GGTCTC 1 cut(s) 757
BsaJI CCNNGG 3 cut(s) 438, 459, 899
BsaWI WCCGGW 2 cut(s) 298, 514
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 7 cut(s) 298, 459, 572, 992, 1179, 1199, 1240
Bse118I RCCGGY 4 cut(s) 266, 424, 452, 541
Bse1I ACTGG 3 cut(s) 564, 680, 1139
Bse3DI GCAATG 1 cut(s) 908
BseBI CCWGG 2 cut(s) 326, 710
BseDI CCNNGG 3 cut(s) 438, 459, 899
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 7 cut(s) 298, 459, 572, 992, 1179, 1199, 1240
BseMI GCAATG 1 cut(s) 908
BseMII CTCAG 3 cut(s) 156, 551, 881
BseNI ACTGG 3 cut(s) 564, 680, 1139
BseRI GAGGAG 3 cut(s) 7, 398, 1195
BseXI GCAGC 4 cut(s) 104, 153, 653, 1172
BseYI CCCAGC 1 cut(s) 346
BshFI GGCC 2 cut(s) 170, 452
BshNI GGYRCC 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 8 cut(s) 267, 299, 425, 453, 459, 515, 542, 1173
BslI CCNNNNNNNGG 7 cut(s) 298, 459, 572, 992, 1179, 1199, 1240
BsmAI GTCTC 2 cut(s) 346, 757
BsmBI CGTCTC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 2 cut(s) 170, 452
Bso31I GGTCTC 1 cut(s) 757
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 3 cut(s) 562, 1081, 1153
Bsp1720I GCTNAGC 1 cut(s) 537
Bsp19I CCATGG 1 cut(s) 899
BspANI GGCC 2 cut(s) 170, 452
BspCNI CTCAG 3 cut(s) 157, 550, 880
BspLI GGNNCC 4 cut(s) 423, 457, 564, 833
BspPI GGATC 3 cut(s) 557, 570, 1089
BspQI GCTCTTC 2 cut(s) 713, 859
BspT107I GGYRCC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 757
BsrDI GCAATG 1 cut(s) 908
BsrFI RCCGGY 4 cut(s) 266, 424, 452, 541
BsrI ACTGG 3 cut(s) 564, 680, 1139
BssAI RCCGGY 4 cut(s) 266, 424, 452, 541
BssECI CCNNGG 3 cut(s) 438, 459, 899
BssMI GATC 3 cut(s) 562, 1081, 1153
BssNI GRCGYC 3 cut(s) 257, 395, 456
BssT1I CCWWGG 1 cut(s) 899
Bst2UI CCWGG 2 cut(s) 326, 710
Bst4CI ACNGT 4 cut(s) 37, 307, 918, 1270
Bst6I CTCTTC 3 cut(s) 708, 713, 859
BstACI GRCGYC 3 cut(s) 257, 395, 456
BstC8I GCNNGC 6 cut(s) 268, 454, 543, 671, 809, 874
BstDEI CTNAG 3 cut(s) 165, 537, 867
BstDSI CCRYGG 2 cut(s) 438, 899
BstEII GGTNACC 1 cut(s) 301
BstF5I GGATG 1 cut(s) 490
BstH2I RGCGCY 3 cut(s) 267, 332, 459
BstHHI GCGC 4 cut(s) 73, 266, 331, 458
BstKTI GATC 3 cut(s) 565, 1084, 1156
BstMAI GTCTC 2 cut(s) 346, 757
BstMBI GATC 3 cut(s) 562, 1081, 1153
BstMWI GCNNNNNNNGC 7 cut(s) 147, 167, 170, 203, 263, 542, 1169
BstNI CCWGG 2 cut(s) 326, 710
BstPAI GACNNNNGTC 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 301
BstSCI CCNGG 3 cut(s) 324, 458, 708
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 4 cut(s) 104, 153, 653, 1172
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BsuI GTATCC 1 cut(s) 1214
BsuRI GGCC 2 cut(s) 170, 452
BtgI CCRYGG 2 cut(s) 438, 899
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 673
Cac8I GCNNGC 6 cut(s) 268, 454, 543, 671, 809, 874
CaiI CAGNNNCTG 2 cut(s) 331, 1240
CfoI GCGC 4 cut(s) 73, 266, 331, 458
Cfr10I RCCGGY 4 cut(s) 266, 424, 452, 541
Cfr13I GGNCC 3 cut(s) 241, 512, 831
CpoI CGGWCCG 1 cut(s) 512
CseI GACGC 4 cut(s) 223, 246, 310, 384
CspI CGGWCCG 1 cut(s) 512
CviAII CATG 3 cut(s) 661, 774, 900
DdeI CTNAG 3 cut(s) 165, 537, 867
DinI GGCGCC 1 cut(s) 457
DpnI GATC 3 cut(s) 564, 1083, 1155
DpnII GATC 3 cut(s) 562, 1081, 1153
DriI GACNNNNNGTC 1 cut(s) 394
Eam1104I CTCTTC 3 cut(s) 708, 713, 859
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 3 cut(s) 708, 713, 859
EciI GGCGGA 3 cut(s) 395, 494, 525
Ecl136II GAGCTC 1 cut(s) 536
Eco130I CCWWGG 1 cut(s) 899
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 1 cut(s) 757
Eco32I GATATC 1 cut(s) 1251
Eco47I GGWCC 3 cut(s) 241, 512, 831
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 1008
Eco88I CYCGRG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 536
EcoO65I GGTNACC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 324, 708
EcoRV GATATC 1 cut(s) 1251
EcoT14I CCWWGG 1 cut(s) 899
EcoT38I GRGCYC 1 cut(s) 538
EgeI GGCGCC 1 cut(s) 457
EheI GGCGCC 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 899
Esp3I CGTCTC 1 cut(s) 346
FaeI CATG 3 cut(s) 664, 777, 903
FalI AAGNNNNNCTT 2 cut(s) 1140, 1172
FatI CATG 3 cut(s) 660, 773, 899
FauI CCCGC 4 cut(s) 29, 155, 263, 678
Fnu4HI GCNGC 8 cut(s) 118, 121, 142, 162, 171, 198, 667, 1161
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 8 cut(s) 118, 121, 142, 162, 171, 198, 667, 1161
FspBI CTAG 1 cut(s) 1279
GlaI GCGC 4 cut(s) 72, 265, 330, 457
GluI GCNGC 8 cut(s) 118, 121, 142, 162, 171, 198, 667, 1161
GsaI CCCAGC 1 cut(s) 350
HaeII RGCGCY 3 cut(s) 267, 332, 459
HaeIII GGCC 2 cut(s) 170, 452
HapII CCGG 8 cut(s) 267, 299, 425, 453, 459, 515, 542, 1173
HgaI GACGC 4 cut(s) 223, 246, 310, 384
HhaI GCGC 4 cut(s) 73, 266, 331, 458
Hin1I GRCGYC 3 cut(s) 257, 395, 456
Hin1II CATG 3 cut(s) 664, 777, 903
Hin6I GCGC 4 cut(s) 71, 264, 329, 456
HinP1I GCGC 4 cut(s) 71, 264, 329, 456
HincII GTYRAC 2 cut(s) 474, 637
HindII GTYRAC 2 cut(s) 474, 637
HpaII CCGG 8 cut(s) 267, 299, 425, 453, 459, 515, 542, 1173
HphI GGTGA 7 cut(s) 37, 85, 91, 295, 412, 442, 971
Hpy166II GTNNAC 2 cut(s) 474, 637
Hpy188I TCNGA 3 cut(s) 41, 533, 733
Hpy188III TCNNGA 4 cut(s) 278, 280, 1196, 1241
Hpy8I GTNNAC 2 cut(s) 474, 637
Hpy99I CGWCG 8 cut(s) 212, 215, 239, 262, 311, 367, 400, 550
HpyAV CCTTC 2 cut(s) 106, 1116
HpyCH4III ACNGT 4 cut(s) 37, 307, 918, 1270
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 3 cut(s) 141, 1005, 1160
HpyF10VI GCNNNNNNNGC 7 cut(s) 147, 167, 170, 203, 263, 542, 1169
HpyF3I CTNAG 3 cut(s) 165, 537, 867
HpySE526I ACGT 1 cut(s) 548
Hsp92I GRCGYC 3 cut(s) 257, 395, 456
Hsp92II CATG 3 cut(s) 664, 777, 903
HspAI GCGC 4 cut(s) 71, 264, 329, 456
KasI GGCGCC 1 cut(s) 455
KroI GCCGGC 3 cut(s) 266, 452, 541
KroNI GCCGGC 3 cut(s) 268, 454, 543
Kzo9I GATC 3 cut(s) 562, 1081, 1153
LguI GCTCTTC 2 cut(s) 713, 859
LmnI GCTCC 3 cut(s) 149, 421, 533
Lsp1109I GCAGC 4 cut(s) 104, 153, 653, 1172
MaeI CTAG 1 cut(s) 1279
MaeII ACGT 1 cut(s) 548
MaeIII GTNAC 2 cut(s) 301, 555
MalI GATC 3 cut(s) 564, 1083, 1155
MboI GATC 3 cut(s) 562, 1081, 1153
MboII GAAGA 6 cut(s) 54, 295, 725, 730, 846, 1245
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 3 cut(s) 130, 567, 1223
Mly113I GGCGCC 1 cut(s) 456
MlyI GAGTC 3 cut(s) 289, 383, 714
MmeI TCCRAC 2 cut(s) 249, 471
MreI CGCCGGCG 1 cut(s) 266
MroNI GCCGGC 3 cut(s) 266, 452, 541
MseI TTAA 1 cut(s) 1071
MspA1I CMGCKG 2 cut(s) 117, 164
MspI CCGG 8 cut(s) 267, 299, 425, 453, 459, 515, 542, 1173
MspR9I CCNGG 3 cut(s) 326, 460, 710
MunI CAATTG 1 cut(s) 567
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 2 cut(s) 326, 710
MwoI GCNNNNNNNGC 7 cut(s) 147, 167, 170, 203, 263, 542, 1169
NaeI GCCGGC 3 cut(s) 268, 454, 543
NarI GGCGCC 1 cut(s) 456
NciI CCSGG 1 cut(s) 460
NcoI CCATGG 1 cut(s) 899
NdeII GATC 3 cut(s) 562, 1081, 1153
NgoMIV GCCGGC 3 cut(s) 266, 452, 541
NlaIII CATG 3 cut(s) 664, 777, 903
NlaIV GGNNCC 4 cut(s) 423, 457, 564, 833
NmeAIII GCCGAG 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 301
PaeR7I CTCGAG 1 cut(s) 278
PciSI GCTCTTC 2 cut(s) 713, 859
PcsI WCGNNNNNNNCGW 3 cut(s) 210, 254, 285
PctI GAATGC 1 cut(s) 723
PdiI GCCGGC 3 cut(s) 268, 454, 543
PfeI GAWTC 8 cut(s) 4, 42, 357, 367, 528, 683, 817, 1144
PflMI CCANNNNNTGG 2 cut(s) 572, 1240
PfoI TCCNGGA 1 cut(s) 708
PkrI GCNGC 8 cut(s) 119, 122, 143, 163, 172, 199, 668, 1162
PleI GAGTC 3 cut(s) 289, 383, 713
PluTI GGCGCC 1 cut(s) 459
PpsI GAGTC 3 cut(s) 289, 383, 713
PshAI GACNNNNGTC 1 cut(s) 299
Psp124BI GAGCTC 1 cut(s) 538
Psp6I CCWGG 2 cut(s) 324, 708
PspEI GGTNACC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 2 cut(s) 324, 708
PspN4I GGNNCC 4 cut(s) 423, 457, 564, 833
PspPI GGNCC 3 cut(s) 241, 512, 831
PstNI CAGNNNCTG 2 cut(s) 331, 1240
PsuI RGATCY 1 cut(s) 562
Rsr2I CGGWCCG 1 cut(s) 512
RsrII CGGWCCG 1 cut(s) 512
SacI GAGCTC 1 cut(s) 538
SapI GCTCTTC 2 cut(s) 713, 859
SaqAI TTAA 1 cut(s) 1071
SatI GCNGC 8 cut(s) 118, 121, 142, 162, 171, 198, 667, 1161
Sau3AI GATC 3 cut(s) 562, 1081, 1153
Sau96I GGNCC 3 cut(s) 241, 512, 831
SchI GAGTC 3 cut(s) 289, 383, 714
ScrFI CCNGG 3 cut(s) 326, 460, 710
SduI GDGCHC 1 cut(s) 538
SfcI CTRYAG 1 cut(s) 181
SfoI GGCGCC 1 cut(s) 457
Sfr274I CTCGAG 1 cut(s) 278
SgrAI CRCCGGYG 1 cut(s) 266
SinI GGWCC 3 cut(s) 241, 512, 831
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 278, 1194
SmoI CTYRAG 2 cut(s) 278, 1194
Sse9I AATT 3 cut(s) 130, 567, 1223
SspDI GGCGCC 1 cut(s) 455
SspMI CTAG 1 cut(s) 1279
SstI GAGCTC 1 cut(s) 538
StyD4I CCNGG 3 cut(s) 324, 458, 708
StyI CCWWGG 1 cut(s) 899
TaaI ACNGT 4 cut(s) 37, 307, 918, 1270
TaiI ACGT 1 cut(s) 551
TaqI TCGA 7 cut(s) 192, 213, 237, 260, 279, 365, 686
TasI AATT 3 cut(s) 130, 567, 1223
TauI GCSGC 4 cut(s) 123, 164, 173, 200
TfiI GAWTC 8 cut(s) 4, 42, 357, 367, 528, 683, 817, 1144
Tru1I TTAA 1 cut(s) 1071
Tru9I TTAA 1 cut(s) 1071
TscAI CASTG 1 cut(s) 680
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 4 cut(s) 117, 141, 666, 1160
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 1033, 1182, 1251
TspGWI ACGGA 2 cut(s) 360, 1192
TspRI CASTG 1 cut(s) 680
Van91I CCANNNNNTGG 2 cut(s) 572, 1240
VpaK11BI GGWCC 3 cut(s) 241, 512, 831
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 1 cut(s) 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.