Rh5DG045500

PAP-specific phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007801
Physical Location & Seq
Reverse (-)
3775965 .. 3778698
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG045500.1

Sequence Viewer

Length: 951 bp
ATGATTCTCGCCCACTCCTCCCGCCATTTCTCCACCGTCCGATTCACCCTCCCCACCTCATCTTCCCCTGCGCCTCCCCGCACCGGAATCCTCACCTCTCTCCCCCGCCGCCTCTCCCATTTCAAATGCAGCTCCGCCCTCCCCTTCGCCGCCGAGACCGCCAAGCACTACAGAGAACTCGAAGCCGCCATCGCCGTCGTCGAAACCGCCTCCAACCTCTGCGTCGAGGTCCAAACGGCGTTGGCGTCGAGCGCCGGCGGGGTTCTCGAGAAGAACGACCAGACTCCGGTCACCGTCGCCGATTTCAGCGTCCAGGCGCTGATCAGTTTAGGTAATTTTTTGCTGGAAACGCCGGTGGTGAGTGCTGTGGTTGATAAGGCCGGCGCCGGGGAAACGCCGTTGACGGCGGAGGATGTGTTGGAGGCGATTGATAGAGGCGGACCGGAGGCTTTTAGATTCGGAGATCAGCCGGCGACGTATTGGTTACTGGATCCAATTGATGGCACAAGAGGATTTGTGAAGGGGAACAAGGCGTTGTTTGTGGTAGGTTTGGCTCTTGTAGTTGACGGGGAGATTGTATTAGGTGTCATGGGCTGCCCGCACTGGCAGGAATCGAACAAATGTATCAATGGAGTCCAGGAAGAGAAGAGCATTCCATCTGAAACAGGGCTTCTTATGGTCTCTCATATTGGTTGTGGCACGTGGACAAGAAGTTTATCATCTGTGCTAAATGGCACGCCAAAGATTCCTTATTCTTGGACCCGTTGCTTTGTTGATGGCTGTTCTGTGGTGGCTCAGGCACGCTTTTGTATCATAGAGAGTGAACCATGGGAGGCATTGCCACCGTCAGCTTTCTTCACCTCAACAACTAATGCTGATAGTGTTGGTGAGGGTCAAGTTCTCGTTTTGAAACCTTGTTGTGGAAGGTTTGTTCTTTTCCAACTCAATTGA

Protein Analysis

316

Amino Acids

33.71

Weight (kDa)

5.3

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 79 - 211 3.4e-13 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 500
AclWI GGATC 2 cut(s) 485, 498
AcvI CACGTG 1 cut(s) 702
AcyI GRCGYC 2 cut(s) 245, 384
AfiI CCNNNNNNNGG 5 cut(s) 83, 286, 387, 500, 920
AgsI TTSAA 2 cut(s) 124, 910
AjnI CCWGG 2 cut(s) 312, 636
AloI GAACNNNNNNTCC 2 cut(s) 915, 947
AluBI AGCT 2 cut(s) 132, 851
AluI AGCT 2 cut(s) 132, 851
Alw26I GTCTC 2 cut(s) 149, 685
AlwI GGATC 2 cut(s) 485, 498
AlwNI CAGNNNCTG 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 129, 594
AspLEI GCGC 4 cut(s) 73, 254, 319, 386
AspS9I GGNCC 3 cut(s) 229, 440, 759
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 6 cut(s) 37, 85, 283, 370, 850, 899
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 3 cut(s) 229, 440, 759
BaeI ACNNNNGTAYC 2 cut(s) 607, 640
BamHI GGATCC 1 cut(s) 490
BanI GGYRCC 1 cut(s) 383
BbrPI CACGTG 1 cut(s) 702
BbvI GCAGC 2 cut(s) 141, 581
BccI CCATC 4 cut(s) 197, 494, 664, 770
BceAI ACGGC 4 cut(s) 179, 252, 382, 420
BciT130I CCWGG 2 cut(s) 314, 638
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 149, 685
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 3 cut(s) 255, 320, 387
BisI GCNGC 5 cut(s) 109, 130, 150, 186, 595
BlsI GCNGC 5 cut(s) 110, 131, 151, 187, 596
Bme1390I CCNGG 3 cut(s) 314, 388, 638
Bme18I GGWCC 3 cut(s) 229, 440, 759
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 3 cut(s) 229, 440, 759
BmiI GGNNCC 3 cut(s) 385, 492, 761
BmrFI CCNGG 3 cut(s) 314, 388, 638
BoxI GACNNNNGTC 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 702
BsaHI GRCGYC 2 cut(s) 245, 384
BsaI GGTCTC 2 cut(s) 149, 685
BsaJI CCNNGG 2 cut(s) 387, 827
BsaWI WCCGGW 3 cut(s) 83, 286, 442
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 286, 387, 500, 920
Bse118I RCCGGY 4 cut(s) 254, 352, 380, 469
Bse1I ACTGG 2 cut(s) 492, 608
Bse3DI GCAATG 1 cut(s) 836
BseBI CCWGG 2 cut(s) 314, 638
BseDI CCNNGG 2 cut(s) 387, 827
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 5 cut(s) 83, 286, 387, 500, 920
BseMI GCAATG 1 cut(s) 836
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 2 cut(s) 492, 608
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 2 cut(s) 141, 581
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 8 cut(s) 84, 255, 287, 353, 381, 387, 443, 470
BslI CCNNNNNNNGG 5 cut(s) 83, 286, 387, 500, 920
BsmAI GTCTC 2 cut(s) 149, 685
BsmI GAATGC 1 cut(s) 651
BsnI GGCC 1 cut(s) 380
Bso31I GGTCTC 2 cut(s) 149, 685
BsoBI CYCGRG 1 cut(s) 266
Bsp143I GATC 3 cut(s) 321, 463, 490
Bsp19I CCATGG 1 cut(s) 827
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 808
BspLI GGNNCC 3 cut(s) 385, 492, 761
BspPI GGATC 2 cut(s) 485, 498
BspQI GCTCTTC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 383
BspTNI GGTCTC 2 cut(s) 149, 685
BsrDI GCAATG 1 cut(s) 836
BsrFI RCCGGY 4 cut(s) 254, 352, 380, 469
BsrI ACTGG 2 cut(s) 492, 608
BssAI RCCGGY 4 cut(s) 254, 352, 380, 469
BssECI CCNNGG 2 cut(s) 387, 827
BssMI GATC 3 cut(s) 321, 463, 490
BssNI GRCGYC 2 cut(s) 245, 384
BssT1I CCWWGG 1 cut(s) 827
Bst2UI CCWGG 2 cut(s) 314, 638
Bst4CI ACNGT 3 cut(s) 37, 295, 846
Bst6I CTCTTC 2 cut(s) 636, 641
BstACI GRCGYC 2 cut(s) 245, 384
BstBAI YACGTR 1 cut(s) 702
BstC8I GCNNGC 6 cut(s) 256, 382, 471, 599, 737, 802
BstDEI CTNAG 1 cut(s) 795
BstDSI CCRYGG 1 cut(s) 827
BstEII GGTNACC 1 cut(s) 289
BstF5I GGATG 1 cut(s) 418
BstH2I RGCGCY 3 cut(s) 255, 320, 387
BstHHI GCGC 4 cut(s) 73, 254, 319, 386
BstKTI GATC 3 cut(s) 324, 466, 493
BstMAI GTCTC 2 cut(s) 149, 685
BstMBI GATC 3 cut(s) 321, 463, 490
BstMWI GCNNNNNNNGC 4 cut(s) 158, 191, 251, 349
BstNI CCWGG 2 cut(s) 314, 638
BstPAI GACNNNNGTC 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 289
BstSCI CCNGG 3 cut(s) 312, 386, 636
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 141, 581
BstX2I RGATCY 1 cut(s) 490
BstYI RGATCY 1 cut(s) 490
BsuRI GGCC 1 cut(s) 380
BtgI CCRYGG 1 cut(s) 827
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 601
Cac8I GCNNGC 6 cut(s) 256, 382, 471, 599, 737, 802
CaiI CAGNNNCTG 1 cut(s) 319
CfoI GCGC 4 cut(s) 73, 254, 319, 386
Cfr10I RCCGGY 4 cut(s) 254, 352, 380, 469
Cfr13I GGNCC 3 cut(s) 229, 440, 759
CpoI CGGWCCG 1 cut(s) 440
CseI GACGC 3 cut(s) 211, 234, 298
CspI CGGWCCG 1 cut(s) 440
CviAII CATG 2 cut(s) 589, 828
DdeI CTNAG 1 cut(s) 795
DinI GGCGCC 1 cut(s) 385
DpnI GATC 3 cut(s) 323, 465, 492
DpnII GATC 3 cut(s) 321, 463, 490
Eam1104I CTCTTC 2 cut(s) 636, 641
EarI CTCTTC 2 cut(s) 636, 641
EciI GGCGGA 3 cut(s) 124, 422, 453
Eco130I CCWWGG 1 cut(s) 827
Eco31I GGTCTC 2 cut(s) 149, 685
Eco47I GGWCC 3 cut(s) 229, 440, 759
Eco72I CACGTG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 289
EcoO65I GGTNACC 1 cut(s) 289
EcoRII CCWGG 2 cut(s) 312, 636
EcoT14I CCWWGG 1 cut(s) 827
EgeI GGCGCC 1 cut(s) 385
EheI GGCGCC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 827
FaeI CATG 2 cut(s) 592, 831
FaiI YATR 5 cut(s) 590, 677, 687, 815, 829
FatI CATG 2 cut(s) 588, 827
FauI CCCGC 5 cut(s) 29, 86, 113, 251, 606
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 109, 130, 150, 186, 595
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 5 cut(s) 109, 130, 150, 186, 595
GlaI GCGC 4 cut(s) 72, 253, 318, 385
GluI GCNGC 5 cut(s) 109, 130, 150, 186, 595
HaeII RGCGCY 3 cut(s) 255, 320, 387
HaeIII GGCC 1 cut(s) 380
HapII CCGG 8 cut(s) 84, 255, 287, 353, 381, 387, 443, 470
HgaI GACGC 3 cut(s) 211, 234, 298
HhaI GCGC 4 cut(s) 73, 254, 319, 386
Hin1I GRCGYC 2 cut(s) 245, 384
Hin1II CATG 2 cut(s) 592, 831
Hin6I GCGC 4 cut(s) 71, 252, 317, 384
HinP1I GCGC 4 cut(s) 71, 252, 317, 384
HincII GTYRAC 2 cut(s) 402, 565
HindII GTYRAC 2 cut(s) 402, 565
HinfI GANTC 8 cut(s) 4, 42, 87, 283, 456, 611, 633, 745
HpaII CCGG 8 cut(s) 84, 255, 287, 353, 381, 387, 443, 470
HphI GGTGA 6 cut(s) 37, 85, 283, 370, 850, 899
Hpy166II GTNNAC 4 cut(s) 402, 565, 705, 824
Hpy188I TCNGA 3 cut(s) 41, 461, 661
Hpy188III TCNNGA 2 cut(s) 266, 268
Hpy8I GTNNAC 4 cut(s) 402, 565, 705, 824
Hpy99I CGWCG 6 cut(s) 200, 203, 227, 250, 299, 478
HpyAV CCTTC 3 cut(s) 154, 514, 918
HpyCH4III ACNGT 3 cut(s) 37, 295, 846
HpyCH4IV ACGT 2 cut(s) 476, 701
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 191, 251, 349
HpyF3I CTNAG 1 cut(s) 795
HpySE526I ACGT 2 cut(s) 476, 701
Hsp92I GRCGYC 2 cut(s) 245, 384
Hsp92II CATG 2 cut(s) 592, 831
HspAI GCGC 4 cut(s) 71, 252, 317, 384
KasI GGCGCC 1 cut(s) 383
KroI GCCGGC 3 cut(s) 254, 380, 469
KroNI GCCGGC 3 cut(s) 256, 382, 471
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 3 cut(s) 321, 463, 490
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 2 cut(s) 141, 581
MaeII ACGT 2 cut(s) 476, 701
MaeIII GTNAC 2 cut(s) 289, 483
MalI GATC 3 cut(s) 323, 465, 492
MboI GATC 3 cut(s) 321, 463, 490
MboII GAAGA 5 cut(s) 54, 283, 653, 658, 847
MfeI CAATTG 2 cut(s) 495, 946
MflI RGATCY 1 cut(s) 490
MluCI AATT 3 cut(s) 334, 495, 946
Mly113I GGCGCC 1 cut(s) 384
MlyI GAGTC 2 cut(s) 277, 642
MmeI TCCRAC 2 cut(s) 237, 399
MreI CGCCGGCG 1 cut(s) 254
MroNI GCCGGC 3 cut(s) 254, 380, 469
MspI CCGG 8 cut(s) 84, 255, 287, 353, 381, 387, 443, 470
MspR9I CCNGG 3 cut(s) 314, 388, 638
MunI CAATTG 2 cut(s) 495, 946
Mva1269I GAATGC 1 cut(s) 651
MvaI CCWGG 2 cut(s) 314, 638
MwoI GCNNNNNNNGC 4 cut(s) 158, 191, 251, 349
NaeI GCCGGC 3 cut(s) 256, 382, 471
NarI GGCGCC 1 cut(s) 384
NciI CCSGG 1 cut(s) 388
NcoI CCATGG 1 cut(s) 827
NdeII GATC 3 cut(s) 321, 463, 490
NgoMIV GCCGGC 3 cut(s) 254, 380, 469
NlaIII CATG 2 cut(s) 592, 831
NlaIV GGNNCC 3 cut(s) 385, 492, 761
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 289
PaeR7I CTCGAG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 641
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 242, 273
PctI GAATGC 1 cut(s) 651
PdiI GCCGGC 3 cut(s) 256, 382, 471
PfeI GAWTC 6 cut(s) 4, 42, 87, 456, 611, 745
PflMI CCANNNNNTGG 1 cut(s) 500
PfoI TCCNGGA 1 cut(s) 636
PkrI GCNGC 5 cut(s) 110, 131, 151, 187, 596
PleI GAGTC 2 cut(s) 277, 641
PluTI GGCGCC 1 cut(s) 387
PmaCI CACGTG 1 cut(s) 702
PmlI CACGTG 1 cut(s) 702
PpsI GAGTC 2 cut(s) 277, 641
Ppu21I YACGTR 1 cut(s) 702
PshAI GACNNNNGTC 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 312, 636
PspCI CACGTG 1 cut(s) 702
PspEI GGTNACC 1 cut(s) 289
PspGI CCWGG 2 cut(s) 312, 636
PspN4I GGNNCC 3 cut(s) 385, 492, 761
PspPI GGNCC 3 cut(s) 229, 440, 759
PstNI CAGNNNCTG 1 cut(s) 319
PsuI RGATCY 1 cut(s) 490
Rsr2I CGGWCCG 1 cut(s) 440
RsrII CGGWCCG 1 cut(s) 440
SapI GCTCTTC 1 cut(s) 641
SatI GCNGC 5 cut(s) 109, 130, 150, 186, 595
Sau3AI GATC 3 cut(s) 321, 463, 490
Sau96I GGNCC 3 cut(s) 229, 440, 759
SchI GAGTC 2 cut(s) 277, 642
ScrFI CCNGG 3 cut(s) 314, 388, 638
SfcI CTRYAG 1 cut(s) 169
SfoI GGCGCC 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 266
SgrAI CRCCGGYG 2 cut(s) 254, 352
SinI GGWCC 3 cut(s) 229, 440, 759
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 3 cut(s) 334, 495, 946
SspDI GGCGCC 1 cut(s) 383
StyD4I CCNGG 3 cut(s) 312, 386, 636
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 3 cut(s) 37, 295, 846
TaiI ACGT 2 cut(s) 479, 704
TaqI TCGA 6 cut(s) 180, 201, 225, 248, 267, 614
TasI AATT 3 cut(s) 334, 495, 946
TauI GCSGC 3 cut(s) 111, 152, 188
TfiI GAWTC 6 cut(s) 4, 42, 87, 456, 611, 745
TscAI CASTG 1 cut(s) 608
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 129, 594
Tsp45I GTSAC 1 cut(s) 289
TspRI CASTG 1 cut(s) 608
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 3 cut(s) 229, 440, 759
XhoI CTCGAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.