Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007801

Physical Location & Seq

Genomic Coordinates Forward (+)

30302059 .. 30304938

Gene Structure 2880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30080.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATTTTTGTGCAGTCAGCCCGCCATTTTTCGACCGTCCGATTCACTCGGCCCGATTCGGCACTCCGCCGGCGGCGCTTCCGCGTGAGGTCGAGTTTGCCGTTTGGAACTGAAAAGGCCAACTACTATCGAGAGCTGGAAGCTGCCGTCGATGCCGTGGAGAGAGCTTGCGCGCTCTGCGTTGACATCCAGTCGTCGGTGCTTCAACGGCGGGTCGTTGAAAAGACCGACCAGACTCCGGTGACGGTGGCGGATTTTGGAGTCCAGGCTCTCGTCAGTTTGGAACTTGGGAAACGATTCCCTTTGATTCCATTCGTGGCGGAAGAGGACTCGGCGTTTGTTCGTTCGAATAAACTGGTGGAGCCAGTGCTCAATGCGGTGCTTGACAAATCTAGTTGTGGAGAGAACCCATGGACGGCTGATGAAGTATTGGAAGCCATTGACAGAGGTGGTCCGGAGGGTTTTGCTTTCGGAGCTCAGCCCGCCACTTATTGGGTACTTGACCCCATTGATGGCACAAAAGGATTCGTGAAGGGAAATCCGGCGTTATATGTGGTTGGCTTGGCACTTGTTGTTGACGGGGAGCTTGTATTGGGTGTCATGGGGTGCCCAAACTGGAAGAATGATATATCCAACAAATCCACCTCTGAAGTACAGGAAAAAAATATCACTCCACCTGGATCAGGGATTATTATGGTTGCTCATACAGGCTGTGGAACATGGACAAAACGTTTATCATCTGTACTAAATTCCACAGCCAAAATGCCTTATTCTTGGACTCAATGCTCTGTTGATGGGTCTTGTATTGTGGAAGAGGCACGATTTTCTATCCCAGATAGTGATGTATGGGAGTCATTTCCGCTATCATCTTTATTCAGATCAACTAATGCTGACAGCATTGACGAGGGAGAAATTCTTCTTGTAAAATCTTGTTGTGGAAGTTTATCCAAGTATATGATGGTGGCTTCGGGCGTGGTATCTCTTCATATGCAGCGTGTGAAAGTTCACAGAGTTACCAAGGCTTGGGATCACGTTGTTGGTATTATATGTGTGCAAGAAGCAGGGGGAAAGGTGACTGACTGGAAGGGAGATGAACTTAATCTAGCAGCAGATGAAGTTGGACGGAGGAATATATACCCTTCCCGTGGAATCCTTGCGACTAATGGCACCTTGCATAACCGGCTTTTAGAGATGATATCTTCCAGTTCGTCAACTGTTTCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

409

Amino Acids

44.6

Weight (kDa)

6.14

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05090 AT4G05090
fragaria_vesca	FvH4_3g03790
malus_domestica	MD05G1326400.v1.1 MD10G1304400.v1.1 MD10G1304500.v1.1
prunus_persica	Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1
pyrus_communis	pycom05g30080 pycom10g25690
rosa_chinensis	RchiOBHm_Chr5g0006041
rosa_laevigata	RLG00000031382
rosa_multiflora	Rmu_co8445649.1_g000001 Rmu_sc0004331.1_g000012
rosa_roxburghii	Rroxscaffold_1G00069930
rosa_rugosa	Rorug04G0419400
rosa_samantha	Rh5AG047000 Rh5AG047100 Rh5BG045800 Rh5CG054500 Rh5DG045500
rosa_wichuraiana	Rw5G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	606, 1166
AccB7I	CCANNNNNTGG	2 cut(s)	492, 1023
AccII	CGCG	2 cut(s)	84, 173
AccIII	TCCGGA	1 cut(s)	454
AclI	AACGTT	1 cut(s)	730
AclWI	GGATC	2 cut(s)	688, 1035
AcsI	RAATTY	2 cut(s)	748, 912
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	3 cut(s)	498, 654, 744
AfiI	CCNNNNNNNGG	8 cut(s)	196, 238, 415, 492, 512, 683, 1023, 1145
AgsI	TTSAA	2 cut(s)	206, 221
AhdI	GACNNNNNGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	264, 676
AluBI	AGCT	5 cut(s)	136, 143, 167, 476, 586
AluI	AGCT	5 cut(s)	136, 143, 167, 476, 586
Alw21I	GWGCWC	2 cut(s)	372, 478
AlwI	GGATC	2 cut(s)	688, 1035
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	2 cut(s)	50, 117
ApeKI	GCWGC	3 cut(s)	143, 991, 1106
ApoI	RAATTY	2 cut(s)	748, 912
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
Asp700I	GAANNNNTTC	2 cut(s)	296, 915
AspLEI	GCGC	3 cut(s)	78, 173, 175
AspS9I	GGNCC	2 cut(s)	51, 452
AsuC2I	CCSGG	1 cut(s)	1222
AsuHPI	GGTGA	2 cut(s)	253, 1084
AsuII	TTCGAA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	606, 1166
BanII	GRGCYC	1 cut(s)	478
Bbv12I	GWGCWC	2 cut(s)	372, 478
BbvI	GCAGC	3 cut(s)	130, 1003, 1118
BccI	CCATC	3 cut(s)	506, 788, 952
BceAI	ACGGC	5 cut(s)	85, 131, 140, 224, 432
BciT130I	CCWGG	2 cut(s)	266, 678
BcnI	CCSGG	1 cut(s)	1222
BfaI	CTAG	2 cut(s)	393, 1103
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	4 cut(s)	74, 144, 992, 1107
BlpI	GCTNAGC	1 cut(s)	477
BlsI	GCNGC	4 cut(s)	75, 145, 993, 1108
Bme1390I	CCNGG	3 cut(s)	266, 678, 1222
Bme18I	GGWCC	1 cut(s)	452
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	51, 452
BmiI	GGNNCC	3 cut(s)	363, 608, 1168
BmrFI	CCNGG	3 cut(s)	266, 678, 1222
BmsI	GCATC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	1222
BsaJI	CCNNGG	4 cut(s)	156, 410, 1017, 1144
BsaWI	WCCGGW	2 cut(s)	238, 454
Bsc4I	CCNNNNNNNGG	8 cut(s)	196, 238, 415, 492, 512, 683, 1023, 1145
Bse118I	RCCGGY	2 cut(s)	69, 1179
Bse1I	ACTGG	6 cut(s)	190, 360, 365, 620, 1085, 1203
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	266, 678
BseDI	CCNNGG	4 cut(s)	156, 410, 1017, 1144
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	8 cut(s)	196, 238, 415, 492, 512, 683, 1023, 1145
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	6 cut(s)	190, 360, 365, 620, 1085, 1203
BsePI	GCGCGC	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	3 cut(s)	130, 1003, 1118
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	84, 173
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	52, 119
BshNI	GGYRCC	2 cut(s)	606, 1166
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	372, 478
BsiSI	CCGG	6 cut(s)	70, 239, 455, 542, 1180, 1222
BslI	CCNNNNNNNGG	8 cut(s)	196, 238, 415, 492, 512, 683, 1023, 1145
BsnI	GGCC	2 cut(s)	52, 119
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	3 cut(s)	372, 478, 611
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	680, 878, 1027
Bsp1720I	GCTNAGC	1 cut(s)	477
Bsp19I	CCATGG	1 cut(s)	410
BspANI	GGCC	2 cut(s)	52, 119
BspCNI	CTCAG	1 cut(s)	490
BspEI	TCCGGA	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	84, 173
BspLI	GGNNCC	3 cut(s)	363, 608, 1168
BspPI	GGATC	2 cut(s)	688, 1035
BspT104I	TTCGAA	1 cut(s)	347
BspT107I	GGYRCC	2 cut(s)	606, 1166
BsrFI	RCCGGY	2 cut(s)	69, 1179
BsrI	ACTGG	6 cut(s)	190, 360, 365, 620, 1085, 1203
BssAI	RCCGGY	2 cut(s)	69, 1179
BssECI	CCNNGG	4 cut(s)	156, 410, 1017, 1144
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	3 cut(s)	680, 878, 1027
BssT1I	CCWWGG	2 cut(s)	410, 1017
Bst2UI	CCWGG	2 cut(s)	266, 678
Bst4CI	ACNGT	3 cut(s)	37, 247, 1216
Bst6I	CTCTTC	3 cut(s)	318, 807, 987
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	5 cut(s)	22, 71, 169, 173, 483
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	3 cut(s)	156, 410, 1144
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	2 cut(s)	84, 173
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	3 cut(s)	78, 173, 175
BstKTI	GATC	3 cut(s)	683, 881, 1030
BstMBI	GATC	3 cut(s)	680, 878, 1027
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	7 cut(s)	75, 152, 177, 208, 473, 482, 1180
BstNI	CCWGG	2 cut(s)	266, 678
BstSCI	CCNGG	3 cut(s)	264, 676, 1220
BstSLI	GKGCMC	1 cut(s)	611
BstUI	CGCG	2 cut(s)	84, 173
BstV1I	GCAGC	3 cut(s)	130, 1003, 1118
BsuRI	GGCC	2 cut(s)	52, 119
BtgI	CCRYGG	3 cut(s)	156, 410, 1144
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	5 cut(s)	22, 71, 169, 173, 483
CfoI	GCGC	3 cut(s)	78, 173, 175
Cfr10I	RCCGGY	2 cut(s)	69, 1179
Cfr13I	GGNCC	2 cut(s)	51, 452
Csp6I	GTAC	3 cut(s)	497, 653, 743
CviAII	CATG	3 cut(s)	411, 601, 720
CviQI	GTAC	3 cut(s)	497, 653, 743
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	3 cut(s)	682, 880, 1029
DpnII	GATC	3 cut(s)	680, 878, 1027
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1104I	CTCTTC	3 cut(s)	318, 807, 987
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	3 cut(s)	318, 807, 987
EciI	GGCGGA	3 cut(s)	56, 266, 335
Ecl136II	GAGCTC	1 cut(s)	476
Eco130I	CCWWGG	2 cut(s)	410, 1017
Eco24I	GRGCYC	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	1197
Eco47I	GGWCC	1 cut(s)	452
Eco53kI	GAGCTC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoRII	CCWGG	2 cut(s)	264, 676
EcoRV	GATATC	1 cut(s)	1197
EcoT14I	CCWWGG	2 cut(s)	410, 1017
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	410, 1017
FaeI	CATG	3 cut(s)	414, 604, 723
FatI	CATG	3 cut(s)	410, 600, 719
FauI	CCCGC	3 cut(s)	29, 204, 490
FauNDI	CATATG	1 cut(s)	987
Fnu4HI	GCNGC	4 cut(s)	74, 144, 992, 1107
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	4 cut(s)	74, 144, 992, 1107
FspBI	CTAG	2 cut(s)	393, 1103
GlaI	GCGC	3 cut(s)	77, 172, 174
GluI	GCNGC	4 cut(s)	74, 144, 992, 1107
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	52, 119
HapII	CCGG	6 cut(s)	70, 239, 455, 542, 1180, 1222
HhaI	GCGC	3 cut(s)	78, 173, 175
Hin1II	CATG	3 cut(s)	414, 604, 723
Hin6I	GCGC	3 cut(s)	76, 171, 173
HinP1I	GCGC	3 cut(s)	76, 171, 173
HincII	GTYRAC	3 cut(s)	184, 577, 1212
HindII	GTYRAC	3 cut(s)	184, 577, 1212
HpaII	CCGG	6 cut(s)	70, 239, 455, 542, 1180, 1222
HphI	GGTGA	2 cut(s)	253, 1084
Hpy166II	GTNNAC	4 cut(s)	184, 577, 1006, 1212
Hpy188I	TCNGA	4 cut(s)	41, 473, 649, 878
Hpy188III	TCNNGA	3 cut(s)	131, 455, 529
Hpy8I	GTNNAC	4 cut(s)	184, 577, 1006, 1212
Hpy99I	CGWCG	2 cut(s)	152, 199
HpyAV	CCTTC	3 cut(s)	526, 1078, 1149
HpyCH4III	ACNGT	3 cut(s)	37, 247, 1216
HpyCH4IV	ACGT	2 cut(s)	730, 1032
HpyCH4V	TGCA	4 cut(s)	13, 991, 1054, 1174
HpyF10VI	GCNNNNNNNGC	7 cut(s)	75, 152, 177, 208, 473, 482, 1180
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	2 cut(s)	730, 1032
Hsp92II	CATG	3 cut(s)	414, 604, 723
HspAI	GCGC	3 cut(s)	76, 171, 173
Kpn2I	TCCGGA	1 cut(s)	454
KroI	GCCGGC	1 cut(s)	69
KroNI	GCCGGC	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	680, 878, 1027
LmnI	GCTCC	3 cut(s)	361, 473, 583
Lsp1109I	GCAGC	3 cut(s)	130, 1003, 1118
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	393, 1103
MaeII	ACGT	2 cut(s)	730, 1032
MaeIII	GTNAC	3 cut(s)	241, 1012, 1072
MalI	GATC	3 cut(s)	682, 880, 1029
MboI	GATC	3 cut(s)	680, 878, 1027
MboII	GAAGA	6 cut(s)	335, 631, 824, 908, 974, 1191
MhlI	GDGCHC	3 cut(s)	372, 478, 611
MluCI	AATT	2 cut(s)	748, 912
MlyI	GAGTC	5 cut(s)	229, 270, 323, 772, 860
MmeI	TCCRAC	2 cut(s)	657, 1099
MnlI	CCTC	8 cut(s)	81, 319, 440, 451, 655, 808, 898, 1119
MreI	CGCCGGCG	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	454
MroNI	GCCGGC	1 cut(s)	69
MroXI	GAANNNNTTC	2 cut(s)	296, 915
MseI	TTAA	1 cut(s)	1098
MspI	CCGG	6 cut(s)	70, 239, 455, 542, 1180, 1222
MspR9I	CCNGG	3 cut(s)	266, 678, 1222
MvaI	CCWGG	2 cut(s)	266, 678
MvnI	CGCG	2 cut(s)	84, 173
MwoI	GCNNNNNNNGC	7 cut(s)	75, 152, 177, 208, 473, 482, 1180
NaeI	GCCGGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	1222
NcoI	CCATGG	1 cut(s)	410
NdeI	CATATG	1 cut(s)	987
NdeII	GATC	3 cut(s)	680, 878, 1027
NgoMIV	GCCGGC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	414, 604, 723
NlaIV	GGNNCC	3 cut(s)	363, 608, 1168
NmeAIII	GCCGAG	2 cut(s)	28, 311
NmuCI	GTSAC	2 cut(s)	241, 1072
NspV	TTCGAA	1 cut(s)	347
PauI	GCGCGC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	71
PdmI	GAANNNNTTC	2 cut(s)	296, 915
PfeI	GAWTC	6 cut(s)	42, 56, 297, 307, 525, 1149
PflMI	CCANNNNNTGG	2 cut(s)	492, 1023
PkrI	GCNGC	4 cut(s)	75, 145, 993, 1108
PleI	GAGTC	5 cut(s)	229, 269, 323, 772, 859
PpsI	GAGTC	5 cut(s)	229, 269, 323, 772, 859
Psp124BI	GAGCTC	1 cut(s)	478
Psp1406I	AACGTT	1 cut(s)	730
Psp6I	CCWGG	2 cut(s)	264, 676
PspGI	CCWGG	2 cut(s)	264, 676
PspN4I	GGNNCC	3 cut(s)	363, 608, 1168
PspPI	GGNCC	2 cut(s)	51, 452
PteI	GCGCGC	1 cut(s)	171
RsaI	GTAC	3 cut(s)	498, 654, 744
RsaNI	GTAC	3 cut(s)	497, 653, 743
SacI	GAGCTC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	1098
SatI	GCNGC	4 cut(s)	74, 144, 992, 1107
Sau3AI	GATC	3 cut(s)	680, 878, 1027
Sau96I	GGNCC	2 cut(s)	51, 452
SchI	GAGTC	5 cut(s)	229, 270, 323, 772, 860
ScrFI	CCNGG	3 cut(s)	266, 678, 1222
SduI	GDGCHC	3 cut(s)	372, 478, 611
SfaNI	GCATC	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	347
SgrAI	CRCCGGYG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	452
Sse9I	AATT	2 cut(s)	748, 912
SspMI	CTAG	2 cut(s)	393, 1103
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	3 cut(s)	264, 676, 1220
StyI	CCWWGG	2 cut(s)	410, 1017
TaaI	ACNGT	3 cut(s)	37, 247, 1216
TaiI	ACGT	2 cut(s)	733, 1035
TaqI	TCGA	5 cut(s)	32, 92, 130, 150, 347
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	748, 912
TatI	WGTACW	2 cut(s)	652, 742
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	6 cut(s)	42, 56, 297, 307, 525, 1149
Tru1I	TTAA	1 cut(s)	1098
Tru9I	TTAA	1 cut(s)	1098
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	241, 1072
TseI	GCWGC	3 cut(s)	143, 991, 1106
Tsp45I	GTSAC	2 cut(s)	241, 1072
TspDTI	ATGAA	4 cut(s)	438, 974, 1107, 1128
TspGWI	ACGGA	1 cut(s)	1138
TspRI	CASTG	1 cut(s)	372
Van91I	CCANNNNNTGG	2 cut(s)	492, 1023
VpaK11BI	GGWCC	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	681
XapI	RAATTY	2 cut(s)	748, 912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XmnI	GAANNNNTTC	2 cut(s)	296, 915
XspI	CTAG	2 cut(s)	393, 1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.