Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007801

Physical Location & Seq

Genomic Coordinates Forward (+)

39065231 .. 39066070

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1304400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATTCTCGTCCACTCAGCCCGCCATTTTTCGACTGTAAGATTCACTCAGCCAGATTCGGCCCTCCCGCGGCGGCGCTTCCGCGTGAGGTCTAGCTTGCCGTTCGGTACTGAAAAGGCCAACTACTATCGAGAGCTGGAAGCTGCCGTCGATGTCGTGGAGAGAGCTTGCGCGCTGTGCGTTGACATCCAGTCGTCGGTGCTATCAACTCAACGGCGGATCGTTGAAAAGACCGACCAGACTCCGGTGACGGTGGCGGATTTTGGAGTCCAGGCCCTCGTCAGTTTGGAGCTTGGGAAACGATTCCCTTTGATTCCATTGGTAGCGGAAGAAGACTCCGCGTTTGTTCGGTCGAATAATCTGGTGGAGCCGGTGCTCAATGCGGTGCTTGACAGATCTAGTTTTGGAGAGAACCCATGGACGGCTGGTGAAGTATTGGAAGCCATTGACAGAGGGGGTCCGGAGGGTTTTGCTTTCGGAGCTCAGCCCGCCACTTATTGGGTTTGTTTTCGGATTCGGATTCGCATTTGCATTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

180

Amino Acids

20.0

Weight (kDa)

6.74

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05090 AT4G05090
fragaria_vesca	FvH4_3g03790
malus_domestica	MD05G1326400.v1.1 MD10G1304400.v1.1 MD10G1304500.v1.1
prunus_persica	Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1
pyrus_communis	pycom05g30080 pycom10g25690
rosa_chinensis	RchiOBHm_Chr5g0006041
rosa_laevigata	RLG00000031382
rosa_multiflora	Rmu_co8445649.1_g000001 Rmu_sc0004331.1_g000012
rosa_roxburghii	Rroxscaffold_1G00069930
rosa_rugosa	Rorug04G0419400
rosa_samantha	Rh5AG047000 Rh5AG047100 Rh5BG045800 Rh5CG054500 Rh5DG045500
rosa_wichuraiana	Rw5G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	498
AccII	CGCG	4 cut(s)	70, 84, 173, 341
AccIII	TCCGGA	1 cut(s)	460
AclWI	GGATC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	5 cut(s)	69, 196, 244, 421, 498
AgsI	TTSAA	1 cut(s)	227
AhdI	GACNNNNNGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	6 cut(s)	96, 136, 143, 167, 292, 482
AluI	AGCT	6 cut(s)	96, 136, 143, 167, 292, 482
Alw21I	GWGCWC	2 cut(s)	378, 484
AlwI	GGATC	1 cut(s)	227
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	3 cut(s)	60, 117, 273
ApeKI	GCWGC	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	3 cut(s)	78, 173, 175
AspS9I	GGNCC	3 cut(s)	61, 274, 458
AsuHPI	GGTGA	2 cut(s)	259, 440
AvaII	GGWCC	1 cut(s)	458
BanII	GRGCYC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	378, 484
BbvI	GCAGC	1 cut(s)	130
BceAI	ACGGC	4 cut(s)	85, 131, 230, 438
BciT130I	CCWGG	1 cut(s)	272
BfaI	CTAG	2 cut(s)	93, 399
BfoI	RGCGCY	1 cut(s)	79
BglII	AGATCT	1 cut(s)	395
BisI	GCNGC	3 cut(s)	71, 74, 144
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	3 cut(s)	72, 75, 145
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	458
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	61, 274, 458
BmiI	GGNNCC	2 cut(s)	369, 459
BmrFI	CCNGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	68, 416
BsaWI	WCCGGW	2 cut(s)	244, 460
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 196, 244, 421, 498
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	68, 416
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	5 cut(s)	69, 196, 244, 421, 498
BseMII	CTCAG	3 cut(s)	30, 62, 497
BseNI	ACTGG	1 cut(s)	190
BsePI	GCGCGC	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	4 cut(s)	70, 84, 173, 341
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	3 cut(s)	62, 119, 275
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	378, 484
BsiSI	CCGG	3 cut(s)	245, 371, 461
BslI	CCNNNNNNNGG	5 cut(s)	69, 196, 244, 421, 498
BsnI	GGCC	3 cut(s)	62, 119, 275
Bsp1286I	GDGCHC	2 cut(s)	378, 484
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	219, 395
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	416
BspANI	GGCC	3 cut(s)	62, 119, 275
BspCNI	CTCAG	3 cut(s)	29, 61, 496
BspEI	TCCGGA	1 cut(s)	460
BspFNI	CGCG	4 cut(s)	70, 84, 173, 341
BspLI	GGNNCC	2 cut(s)	369, 459
BspPI	GGATC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	68, 416
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	2 cut(s)	219, 395
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	37, 253
BstC8I	GCNNGC	5 cut(s)	22, 98, 169, 173, 489
BstDEI	CTNAG	3 cut(s)	16, 48, 483
BstDSI	CCRYGG	2 cut(s)	68, 416
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	4 cut(s)	70, 84, 173, 341
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	3 cut(s)	78, 173, 175
BstKTI	GATC	2 cut(s)	222, 398
BstMBI	GATC	2 cut(s)	219, 395
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 479, 488
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstUI	CGCG	4 cut(s)	70, 84, 173, 341
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	62, 119, 275
BtgI	CCRYGG	2 cut(s)	68, 416
BtsCI	GGATG	1 cut(s)	186
Cac8I	GCNNGC	5 cut(s)	22, 98, 169, 173, 489
CfoI	GCGC	3 cut(s)	78, 173, 175
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	61, 274, 458
Cfr42I	CCGCGG	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	1 cut(s)	417
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	16, 48, 483
DpnI	GATC	2 cut(s)	221, 397
DpnII	GATC	2 cut(s)	219, 395
DriI	GACNNNNNGTC	1 cut(s)	190
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EciI	GGCGGA	2 cut(s)	232, 272
Ecl136II	GAGCTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	1 cut(s)	420
FaiI	YATR	3 cut(s)	418, 536, 538
FatI	CATG	1 cut(s)	416
FauI	CCCGC	3 cut(s)	29, 75, 496
Fnu4HI	GCNGC	3 cut(s)	71, 74, 144
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	3 cut(s)	71, 74, 144
FspBI	CTAG	2 cut(s)	93, 399
GlaI	GCGC	3 cut(s)	77, 172, 174
GluI	GCNGC	3 cut(s)	71, 74, 144
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	62, 119, 275
HapII	CCGG	3 cut(s)	245, 371, 461
HhaI	GCGC	3 cut(s)	78, 173, 175
Hin1II	CATG	1 cut(s)	420
Hin6I	GCGC	3 cut(s)	76, 171, 173
HinP1I	GCGC	3 cut(s)	76, 171, 173
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HpaII	CCGG	3 cut(s)	245, 371, 461
HphI	GGTGA	2 cut(s)	259, 440
Hpy166II	GTNNAC	2 cut(s)	13, 184
Hpy188I	TCNGA	3 cut(s)	479, 513, 519
Hpy188III	TCNNGA	2 cut(s)	131, 461
Hpy8I	GTNNAC	2 cut(s)	13, 184
Hpy99I	CGWCG	2 cut(s)	152, 199
HpyCH4III	ACNGT	2 cut(s)	37, 253
HpyCH4V	TGCA	1 cut(s)	531
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 479, 488
HpyF3I	CTNAG	3 cut(s)	16, 48, 483
Hsp92II	CATG	1 cut(s)	420
HspAI	GCGC	3 cut(s)	76, 171, 173
Kpn2I	TCCGGA	1 cut(s)	460
KspI	CCGCGG	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	219, 395
LmnI	GCTCC	3 cut(s)	289, 367, 479
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	93, 399
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	221, 397
MboI	GATC	2 cut(s)	219, 395
MboII	GAAGA	2 cut(s)	341, 344
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	2 cut(s)	378, 484
MlyI	GAGTC	3 cut(s)	235, 276, 329
MnlI	CCTC	5 cut(s)	74, 81, 287, 446, 457
MroI	TCCGGA	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	70
MspI	CCGG	3 cut(s)	245, 371, 461
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	4 cut(s)	70, 84, 173, 341
MwoI	GCNNNNNNNGC	3 cut(s)	177, 479, 488
NcoI	CCATGG	1 cut(s)	416
NdeII	GATC	2 cut(s)	219, 395
NlaIII	CATG	1 cut(s)	420
NlaIV	GGNNCC	2 cut(s)	369, 459
NmuCI	GTSAC	1 cut(s)	247
PauI	GCGCGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	7 cut(s)	4, 42, 56, 303, 313, 514, 520
PflMI	CCANNNNNTGG	1 cut(s)	498
PkrI	GCNGC	3 cut(s)	72, 75, 145
PleI	GAGTC	3 cut(s)	235, 275, 329
PpsI	GAGTC	3 cut(s)	235, 275, 329
Psp124BI	GAGCTC	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	369, 459
PspPI	GGNCC	3 cut(s)	61, 274, 458
PsuI	RGATCY	1 cut(s)	395
PteI	GCGCGC	1 cut(s)	171
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	484
SacII	CCGCGG	1 cut(s)	71
SatI	GCNGC	3 cut(s)	71, 74, 144
Sau3AI	GATC	2 cut(s)	219, 395
Sau96I	GGNCC	3 cut(s)	61, 274, 458
SchI	GAGTC	3 cut(s)	235, 276, 329
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	378, 484
SetI	ASST	7 cut(s)	92, 98, 138, 145, 169, 294, 484
Sfr303I	CCGCGG	1 cut(s)	71
SgrBI	CCGCGG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	458
SspMI	CTAG	2 cut(s)	93, 399
SstI	GAGCTC	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	37, 253
TaqI	TCGA	4 cut(s)	32, 130, 150, 353
TaqII	GACCGA	2 cut(s)	248, 339
TauI	GCSGC	2 cut(s)	73, 76
TfiI	GAWTC	7 cut(s)	4, 42, 56, 303, 313, 514, 520
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	302
XspI	CTAG	2 cut(s)	93, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.