Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8445649.1

Orthogroup ID

OG0007801

Physical Location & Seq

Genomic Coordinates Forward (+)

347 .. 1224

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8445649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgattctcgcccactcctcccgccatttctccaccgtccgattcaccctccccacctcatcttcccctgcgcctccccacacccgaactctcaccttcacctccacctctctccgctgccgcctctccaatttcaaatgcagctcccgcctcccattcgccgccgaggccgccaagcactacagagaactcgaagccgccatcgccgtcgtcgaaaccgcctccagcctctgcgtcgaggtccaaacggcgttgggtttggcgtcgagcgccggcggggttctcgagaagaacgaccagactccggtcaccgtcgccgatttcagcgtccaggcgctgatcagtttagagctggggagacgattcccgtcgattccgttggtggcggaggaggactcggcgtcggtgagggagaataatctggtggagccggtggtgagtgccgtggttgataaggccggcgccggggaaacgccgttgacggcggaggatgtgttggaggcgattgatagaggcggaccggaggcttttagattcggagctcagccggcgacgtattggttactggatccaattgatggcacaagaggatttgtgaaggggaacaaggcgttgtttgtggtatgttttaccagctgtaaaaatatggctttcggttttcgcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

222

Amino Acids

23.76

Weight (kDa)

6.1

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05090 AT4G05090
fragaria_vesca	FvH4_3g03790
malus_domestica	MD05G1326400.v1.1 MD10G1304400.v1.1 MD10G1304500.v1.1
prunus_persica	Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1 Prupe.4G035200_v2.0.a1
pyrus_communis	pycom05g30080 pycom10g25690
rosa_chinensis	RchiOBHm_Chr5g0006041
rosa_laevigata	RLG00000031382
rosa_multiflora	Rmu_co8445649.1_g000001 Rmu_sc0004331.1_g000012
rosa_roxburghii	Rroxscaffold_1G00069930
rosa_rugosa	Rorug04G0419400
rosa_samantha	Rh5AG047000 Rh5AG047100 Rh5BG045800 Rh5CG054500 Rh5DG045500
rosa_wichuraiana	Rw5G004710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	578
AclWI	GGATC	2 cut(s)	563, 576
AcyI	GRCGYC	3 cut(s)	263, 401, 462
AfiI	CCNNNNNNNGG	3 cut(s)	304, 465, 578
AgsI	TTSAA	1 cut(s)	136
AhdI	GACNNNNNGTC	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	4 cut(s)	144, 352, 542, 636
AluI	AGCT	4 cut(s)	144, 352, 542, 636
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	2 cut(s)	563, 576
AlwNI	CAGNNNCTG	2 cut(s)	231, 337
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	168, 456
ApeKI	GCWGC	2 cut(s)	117, 141
AspLEI	GCGC	4 cut(s)	73, 272, 337, 464
AspS9I	GGNCC	2 cut(s)	241, 518
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	6 cut(s)	37, 85, 91, 301, 418, 448
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	2 cut(s)	241, 518
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	544
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	2 cut(s)	104, 153
BccI	CCATC	2 cut(s)	209, 572
BceAI	ACGGC	5 cut(s)	191, 264, 428, 460, 498
BciT130I	CCWGG	1 cut(s)	332
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	3 cut(s)	273, 338, 465
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	6 cut(s)	118, 121, 142, 162, 171, 198
BlpI	GCTNAGC	1 cut(s)	543
BlsI	GCNGC	6 cut(s)	119, 122, 143, 163, 172, 199
Bme1390I	CCNGG	2 cut(s)	332, 466
Bme18I	GGWCC	2 cut(s)	241, 518
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	241, 518
BmiI	GGNNCC	3 cut(s)	429, 463, 570
BmrFI	CCNGG	2 cut(s)	332, 466
BoxI	GACNNNNGTC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
BpmI	CTGGAG	1 cut(s)	208
Bpu1102I	GCTNAGC	1 cut(s)	543
BpuMI	CCSGG	1 cut(s)	466
BsaHI	GRCGYC	3 cut(s)	263, 401, 462
BsaJI	CCNNGG	3 cut(s)	165, 444, 465
BsaWI	WCCGGW	2 cut(s)	304, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 465, 578
Bse118I	RCCGGY	4 cut(s)	272, 430, 458, 547
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	3 cut(s)	165, 444, 465
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	3 cut(s)	304, 465, 578
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	570
BseRI	GAGGAG	2 cut(s)	7, 404
BseXI	GCAGC	2 cut(s)	104, 153
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	170, 458
BshNI	GGYRCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	7 cut(s)	273, 305, 431, 459, 465, 521, 548
BslI	CCNNNNNNNGG	3 cut(s)	304, 465, 578
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	170, 458
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	339, 568
Bsp1720I	GCTNAGC	1 cut(s)	543
BspANI	GGCC	2 cut(s)	170, 458
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	429, 463, 570
BspPI	GGATC	2 cut(s)	563, 576
BspT107I	GGYRCC	1 cut(s)	461
BsrFI	RCCGGY	4 cut(s)	272, 430, 458, 547
BsrI	ACTGG	1 cut(s)	570
BssAI	RCCGGY	4 cut(s)	272, 430, 458, 547
BssECI	CCNNGG	3 cut(s)	165, 444, 465
BssMI	GATC	2 cut(s)	339, 568
BssNI	GRCGYC	3 cut(s)	263, 401, 462
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	37, 313
BstACI	GRCGYC	3 cut(s)	263, 401, 462
BstC8I	GCNNGC	3 cut(s)	274, 460, 549
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	496
BstH2I	RGCGCY	3 cut(s)	273, 338, 465
BstHHI	GCGC	4 cut(s)	73, 272, 337, 464
BstKTI	GATC	2 cut(s)	342, 571
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	2 cut(s)	339, 568
BstMWI	GCNNNNNNNGC	6 cut(s)	147, 167, 170, 203, 269, 548
BstNI	CCWGG	1 cut(s)	332
BstPAI	GACNNNNGTC	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	330, 464
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	104, 153
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	170, 458
BtgI	CCRYGG	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	496
Cac8I	GCNNGC	3 cut(s)	274, 460, 549
CaiI	CAGNNNCTG	2 cut(s)	231, 337
CfoI	GCGC	4 cut(s)	73, 272, 337, 464
Cfr10I	RCCGGY	4 cut(s)	272, 430, 458, 547
Cfr13I	GGNCC	2 cut(s)	241, 518
CpoI	CGGWCCG	1 cut(s)	518
CseI	GACGC	4 cut(s)	223, 252, 316, 390
CspI	CGGWCCG	1 cut(s)	518
DdeI	CTNAG	1 cut(s)	543
DinI	GGCGCC	1 cut(s)	463
DpnI	GATC	2 cut(s)	341, 570
DpnII	GATC	2 cut(s)	339, 568
DriI	GACNNNNNGTC	1 cut(s)	400
Eam1105I	GACNNNNNGTC	1 cut(s)	400
EciI	GGCGGA	3 cut(s)	401, 500, 531
Ecl136II	GAGCTC	1 cut(s)	542
Eco24I	GRGCYC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	241, 518
Eco53kI	GAGCTC	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	284
Eco91I	GGTNACC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	542
EcoO65I	GGTNACC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	544
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	352
FaiI	YATR	2 cut(s)	625, 647
FauI	CCCGC	3 cut(s)	29, 155, 269
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	6 cut(s)	118, 121, 142, 162, 171, 198
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	6 cut(s)	118, 121, 142, 162, 171, 198
GlaI	GCGC	4 cut(s)	72, 271, 336, 463
GluI	GCNGC	6 cut(s)	118, 121, 142, 162, 171, 198
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	3 cut(s)	273, 338, 465
HaeIII	GGCC	2 cut(s)	170, 458
HapII	CCGG	7 cut(s)	273, 305, 431, 459, 465, 521, 548
HgaI	GACGC	4 cut(s)	223, 252, 316, 390
HhaI	GCGC	4 cut(s)	73, 272, 337, 464
Hin1I	GRCGYC	3 cut(s)	263, 401, 462
Hin6I	GCGC	4 cut(s)	71, 270, 335, 462
HinP1I	GCGC	4 cut(s)	71, 270, 335, 462
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HinfI	GANTC	7 cut(s)	4, 42, 301, 363, 373, 395, 534
HpaII	CCGG	7 cut(s)	273, 305, 431, 459, 465, 521, 548
HphI	GGTGA	6 cut(s)	37, 85, 91, 301, 418, 448
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	2 cut(s)	41, 539
Hpy188III	TCNNGA	2 cut(s)	284, 286
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	8 cut(s)	212, 215, 239, 268, 317, 373, 406, 556
HpyAV	CCTTC	2 cut(s)	106, 592
HpyCH4III	ACNGT	2 cut(s)	37, 313
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	6 cut(s)	147, 167, 170, 203, 269, 548
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	3 cut(s)	263, 401, 462
HspAI	GCGC	4 cut(s)	71, 270, 335, 462
KasI	GGCGCC	1 cut(s)	461
KroI	GCCGGC	3 cut(s)	272, 458, 547
KroNI	GCCGGC	3 cut(s)	274, 460, 549
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	339, 568
LmnI	GCTCC	3 cut(s)	149, 427, 539
Lsp1109I	GCAGC	2 cut(s)	104, 153
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	307, 561
MalI	GATC	2 cut(s)	341, 570
MboI	GATC	2 cut(s)	339, 568
MboII	GAAGA	2 cut(s)	54, 301
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	2 cut(s)	130, 573
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	295, 389
MmeI	TCCRAC	1 cut(s)	477
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	3 cut(s)	272, 458, 547
MspA1I	CMGCKG	2 cut(s)	117, 636
MspI	CCGG	7 cut(s)	273, 305, 431, 459, 465, 521, 548
MspR9I	CCNGG	2 cut(s)	332, 466
MunI	CAATTG	1 cut(s)	573
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	6 cut(s)	147, 167, 170, 203, 269, 548
NaeI	GCCGGC	3 cut(s)	274, 460, 549
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	1 cut(s)	466
NdeII	GATC	2 cut(s)	339, 568
NgoMIV	GCCGGC	3 cut(s)	272, 458, 547
NlaIV	GGNNCC	3 cut(s)	429, 463, 570
NmeAIII	GCCGAG	2 cut(s)	190, 377
NmuCI	GTSAC	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 291
PdiI	GCCGGC	3 cut(s)	274, 460, 549
PfeI	GAWTC	5 cut(s)	4, 42, 363, 373, 534
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	6 cut(s)	119, 122, 143, 163, 172, 199
PleI	GAGTC	2 cut(s)	295, 389
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	2 cut(s)	295, 389
PshAI	GACNNNNGTC	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	330
PspEI	GGTNACC	1 cut(s)	307
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	3 cut(s)	429, 463, 570
PspPI	GGNCC	2 cut(s)	241, 518
PstNI	CAGNNNCTG	2 cut(s)	231, 337
PsuI	RGATCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	636
Rsr2I	CGGWCCG	1 cut(s)	518
RsrII	CGGWCCG	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	544
SatI	GCNGC	6 cut(s)	118, 121, 142, 162, 171, 198
Sau3AI	GATC	2 cut(s)	339, 568
Sau96I	GGNCC	2 cut(s)	241, 518
SchI	GAGTC	2 cut(s)	295, 389
ScrFI	CCNGG	2 cut(s)	332, 466
SduI	GDGCHC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	181
SfoI	GGCGCC	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	284
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	241, 518
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	130, 573
SspDI	GGCGCC	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	544
StyD4I	CCNGG	2 cut(s)	330, 464
TaaI	ACNGT	2 cut(s)	37, 313
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	6 cut(s)	192, 213, 237, 266, 285, 371
TasI	AATT	2 cut(s)	130, 573
TauI	GCSGC	4 cut(s)	123, 164, 173, 200
TfiI	GAWTC	5 cut(s)	4, 42, 363, 373, 534
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	117, 141
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	1 cut(s)	366
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	2 cut(s)	241, 518
XhoI	CTCGAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.