Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003562

Physical Location & Seq

Genomic Coordinates Forward (+)

2712517 .. 2715598

Gene Structure 3082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04750.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGGGAATCGAGGAAAACAGGAATGCTGGTCAGAATGGAGTGTTTGGGTCTGATTCGTCGGAGTTTCAACTGGGGAGCAAGAACAAGTACAAGAGAATGAAGTCTGAGGTCACTGAGGAAGAAGAGGAAGATGGTTCTTTCTCAAAAGAGAATCGTGATACCAGGAAATATGTGTTTGCTTGTGCCATCTTTGCTTCTCTCAATTCTGTGCTTCTTGGATATGATGTGGGTGTTATGAGTGGAGCTATTCTCTTCATTCAGGAGGATTTAAAAATCACAGATGTGCAGCAAGAACTTCTTGTTGGGATTTTGAGCATAATCTCCCTACTGGGTAGTTTAGCTGGTGGAAAAACATCGGATGCCATTGGTCGAAAATGGACTATTGCATTTGCAGCCTTTATCTTCCAGACAGGTGCAGCTGTAATGGCATTTGCTCCTTCTTATGAAGTATTGATGATTGGTAGACTCTTTGCTGGGATTGGTATAGGATTTGGGGTCATGATTGCACCTGTATATATTGCTGAGATCTCACCTTCAGTAGCTAGGGGTTCTCTTACTTCATTTCCTGAGATCTTCATAAATCTAGGCATCCTTCTTGGATACATATCAAATTATGCTTTCTCGGGGCTTCCAGTGCATATAAGTTGGAGGGTGATGCTTGGTGTGGGAATCATACCTTCAGTCTTTCTTGGATTTGCTCTTTTTGTGATCCCCGAATCCCCGAGGTGGTTAGTTATGCAGAACAGGATTGAAGAAGCAAGAATAGTATTGATCAAGACAAATGACAGTGAAAAAGAAGTTGAGGAGAGATTGGCAGAAATACAGCTAGCTGCTGCAGGAATGGCTAATGCTGAGAATAATGAAGCAAAAGCTATATGGCGCGAGATTCTGAATCCTTCTCCCCCAGTTCGACGAATGCTCATTACTGGTTGCGGAATCCAATGTTTCCAACAGATTACAGGCATTGATGCAACTGTGTATTATAGTCCAACAATTTTCAAGAATGCCGGGATTAAAGGCAACACTCAACTTCTTGCTGCAACTGTTATTGTTGGGCTTACAAAGACTGTGTTCATCTTGGTAGCTATATTTCTTATTGACAAAGTGGGGAGAAAGCCTTTGCTTTATGTGAGCACTATTGGAATGACTACTTGCTTACTTGGGCTGAGCCTTGCACTGGCTTTTCACGGAAATGGAAAACTTGGAATTGGATTGGCAATATTAGCCGTTTGTGGGAATGTTGCTTTCTTCTCAGTTGGAATTGGTCCGGTTTGTTGGGTCTTGTCTTCTGAAATATTCCCATTAAGGCTTCGAGCTCAAGCATCCGCGCTTGGGGCAGTTGGTAGTAGGGTTAGTAGTGGTGTGATTACCATGTCATTTCTCTCAGTGTCTCGAGCAATTACAGTAGCAGGAACCTTCTTTGTTTTTGCAGTGATTTCAGCTCTCTCGGTTGCTTTTGTCCATACATGTGTTCCCGAAACAAAAGGGAAGTCGTTAGAAGAAATCGAAATGGTTTTCCATCACGAAGGGGAGTGGCAAGGAAGTGAAGTAGAAATGGGAGATGCACAGCGTCTAATGCAGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

530

Amino Acids

57.0

Weight (kDa)

5.77

Isoelectric Point (pI)

37.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	61 - 447	5e-98	Sugar (and other) transporter
MFS_1	PF07690	67 - 446	9.6e-34	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20780 AT2G20780
fragaria_vesca	FvH4_3g04750 FvH4_3g04750 FvH4_3g04750 FvH4_5g27230
malus_domestica	MD05G1318100.v1.1 MD10G1297500.v1.1 MD17G1244000.v1.1
prunus_persica	Prupe.3G156900_v2.0.a1 Prupe.4G042700_v2.0.a1 Prupe.4G042700_v2.0.a1
pyrus_communis	pycom05g29450 pycom09g16810 pycom10g25100 pycom17g24690
rosa_chinensis	RchiOBHm_Chr5g0007771 RchiOBHm_Chr7g0218421
rosa_laevigata	RLG00000002377 RLG00000031487
rosa_multiflora	Rmu_co8512857.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068640 Rroxscaffold_3G00241020
rosa_rugosa	Rorug04G0430200 Rorug07G0177000
rosa_samantha	Rh5AG058700 Rh5BG055400 Rh5CG065200 Rh5DG054400 Rh7AG318200 Rh7BG310100 Rh7CG335000 Rh7DG317300
rosa_wichuraiana	Rw5G006110 Rw7G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	463
AccII	CGCG	2 cut(s)	882, 1328
AciI	CCGC	2 cut(s)	933, 1326
AclWI	GGATC	1 cut(s)	703
AcuI	CTGAAG	2 cut(s)	519, 663
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	4 cut(s)	726, 1177, 1233, 1332
AflIII	ACRYGT	1 cut(s)	1466
AgsI	TTSAA	3 cut(s)	68, 752, 1000
AjnI	CCWGG	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AleI	CACNNNNGTG	1 cut(s)	281
Alw21I	GWGCWC	2 cut(s)	1136, 1318
Alw26I	GTCTC	1 cut(s)	1395
AlwI	GGATC	1 cut(s)	703
Ama87I	CYCGRG	3 cut(s)	622, 721, 1392
ApeKI	GCWGC	6 cut(s)	286, 392, 416, 830, 833, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	1475, 1507
AspLEI	GCGC	2 cut(s)	882, 1330
AspS9I	GGNCC	1 cut(s)	1265
AsuC2I	CCSGG	1 cut(s)	1009
AsuHPI	GGTGA	2 cut(s)	522, 664
AsuNHI	GCTAGC	1 cut(s)	826
AvaI	CYCGRG	3 cut(s)	622, 721, 1392
AvaII	GGWCC	1 cut(s)	1265
BanII	GRGCYC	1 cut(s)	1318
BbsI	GAAGAC	1 cut(s)	1278
Bbv12I	GWGCWC	2 cut(s)	1136, 1318
BbvI	GCAGC	6 cut(s)	298, 404, 428, 817, 820, 1024
BccI	CCATC	3 cut(s)	125, 194, 1527
BceAI	ACGGC	1 cut(s)	1211
BciT130I	CCWGG	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	593
BclI	TGATCA	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	1395
BfaI	CTAG	3 cut(s)	543, 584, 827
BfmI	CTRYAG	1 cut(s)	834
BfuI	GTATCC	1 cut(s)	593
BglII	AGATCT	2 cut(s)	525, 570
BisI	GCNGC	6 cut(s)	287, 393, 417, 831, 834, 1038
BlpI	GCTNAGC	1 cut(s)	1166
BlsI	GCNGC	6 cut(s)	288, 394, 418, 832, 835, 1039
Bme1390I	CCNGG	2 cut(s)	163, 1009
Bme18I	GGWCC	1 cut(s)	1265
BmeT110I	CYCGRG	3 cut(s)	622, 721, 1392
BmgT120I	GGNCC	1 cut(s)	1265
BmiI	GGNNCC	1 cut(s)	1414
BmrFI	CCNGG	2 cut(s)	163, 1009
BmrI	ACTGGG	3 cut(s)	80, 338, 899
BmsI	GCATC	6 cut(s)	349, 597, 645, 958, 1331, 1552
BmtI	GCTAGC	1 cut(s)	830
BmuI	ACTGGG	3 cut(s)	80, 338, 899
BpiI	GAAGAC	1 cut(s)	1278
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
Bpu1102I	GCTNAGC	1 cut(s)	1166
BpuEI	CTTGAG	1 cut(s)	1302
BpuMI	CCSGG	1 cut(s)	1009
BsaBI	GATNNNNATC	1 cut(s)	604
BsaJI	CCNNGG	1 cut(s)	722
BsaWI	WCCGGW	1 cut(s)	1267
Bsc4I	CCNNNNNNNGG	4 cut(s)	726, 1177, 1233, 1332
Bse1I	ACTGG	6 cut(s)	75, 333, 632, 905, 931, 1182
Bse8I	GATNNNNATC	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	722
BseGI	GGATG	3 cut(s)	364, 588, 1322
BseJI	GATNNNNATC	1 cut(s)	604
BseLI	CCNNNNNNNGG	4 cut(s)	726, 1177, 1233, 1332
BseMII	CTCAG	8 cut(s)	96, 105, 513, 558, 843, 1157, 1266, 1398
BseNI	ACTGG	6 cut(s)	75, 333, 632, 905, 931, 1182
BseRI	GAGGAG	1 cut(s)	818
BseXI	GCAGC	6 cut(s)	298, 404, 428, 817, 820, 1024
BseYI	CCCAGC	1 cut(s)	473
BsgI	GTGCAG	2 cut(s)	305, 435
Bsh1236I	CGCG	2 cut(s)	882, 1328
BsiHKAI	GWGCWC	2 cut(s)	1136, 1318
BsiHKCI	CYCGRG	3 cut(s)	622, 721, 1392
BsiSI	CCGG	2 cut(s)	1008, 1268
BslI	CCNNNNNNNGG	4 cut(s)	726, 1177, 1233, 1332
BsmAI	GTCTC	1 cut(s)	1395
BsmI	GAATGC	3 cut(s)	28, 921, 1009
BsoBI	CYCGRG	3 cut(s)	622, 721, 1392
Bsp1286I	GDGCHC	2 cut(s)	1136, 1318
Bsp143I	GATC	4 cut(s)	525, 570, 708, 771
Bsp1720I	GCTNAGC	1 cut(s)	1166
BspACI	CCGC	2 cut(s)	933, 1326
BspCNI	CTCAG	8 cut(s)	97, 106, 514, 559, 844, 1158, 1265, 1397
BspFNI	CGCG	2 cut(s)	882, 1328
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	1 cut(s)	1414
BspMAI	CTGCAG	1 cut(s)	838
BspOI	GCTAGC	1 cut(s)	830
BspPI	GGATC	1 cut(s)	703
BsrI	ACTGG	6 cut(s)	75, 333, 632, 905, 931, 1182
BssECI	CCNNGG	1 cut(s)	722
BssMI	GATC	4 cut(s)	525, 570, 708, 771
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	5 cut(s)	788, 976, 1045, 1069, 1405
Bst6I	CTCTTC	2 cut(s)	117, 257
BstC8I	GCNNGC	1 cut(s)	828
BstDEI	CTNAG	8 cut(s)	105, 114, 522, 567, 852, 1166, 1252, 1384
BstF5I	GGATG	3 cut(s)	364, 588, 1322
BstFNI	CGCG	2 cut(s)	882, 1328
BstHHI	GCGC	2 cut(s)	882, 1330
BstKTI	GATC	4 cut(s)	528, 573, 711, 774
BstMAI	GTCTC	1 cut(s)	1395
BstMBI	GATC	4 cut(s)	525, 570, 708, 771
BstMWI	GCNNNNNNNGC	8 cut(s)	191, 392, 425, 634, 842, 1223, 1334, 1576
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	1470
BstSCI	CCNGG	2 cut(s)	161, 1007
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	2 cut(s)	882, 1328
BstV1I	GCAGC	6 cut(s)	298, 404, 428, 817, 820, 1024
BstV2I	GAAGAC	1 cut(s)	1278
BstX2I	RGATCY	2 cut(s)	525, 570
BstYI	RGATCY	2 cut(s)	525, 570
BsuI	GTATCC	1 cut(s)	593
BtsCI	GGATG	3 cut(s)	364, 588, 1322
BtsI	GCAGTG	1 cut(s)	1437
BtsIMutI	CAGTG	6 cut(s)	111, 639, 793, 1175, 1392, 1437
Cac8I	GCNNGC	1 cut(s)	828
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	2 cut(s)	882, 1330
Cfr13I	GGNCC	1 cut(s)	1265
CseI	GACGC	1 cut(s)	1559
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	499, 1372, 1467
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	8 cut(s)	105, 114, 522, 567, 852, 1166, 1252, 1384
DpnI	GATC	4 cut(s)	527, 572, 710, 773
DpnII	GATC	4 cut(s)	525, 570, 708, 771
DraI	TTTAAA	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	117, 257
EarI	CTCTTC	2 cut(s)	117, 257
Ecl136II	GAGCTC	1 cut(s)	1316
Eco24I	GRGCYC	1 cut(s)	1318
Eco47I	GGWCC	1 cut(s)	1265
Eco53kI	GAGCTC	1 cut(s)	1316
Eco57I	CTGAAG	2 cut(s)	519, 663
Eco88I	CYCGRG	3 cut(s)	622, 721, 1392
EcoICRI	GAGCTC	1 cut(s)	1316
EcoRII	CCWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	1318
FaeI	CATG	3 cut(s)	502, 1375, 1470
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	3 cut(s)	498, 1371, 1466
FbaI	TGATCA	1 cut(s)	771
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	6 cut(s)	287, 393, 417, 831, 834, 1038
FokI	GGATG	3 cut(s)	371, 575, 1309
FriOI	GRGCYC	1 cut(s)	1318
Fsp4HI	GCNGC	6 cut(s)	287, 393, 417, 831, 834, 1038
FspBI	CTAG	3 cut(s)	543, 584, 827
GlaI	GCGC	2 cut(s)	881, 1329
GluI	GCNGC	6 cut(s)	287, 393, 417, 831, 834, 1038
GsaI	CCCAGC	1 cut(s)	477
HapII	CCGG	2 cut(s)	1008, 1268
HgaI	GACGC	1 cut(s)	1559
HhaI	GCGC	2 cut(s)	882, 1330
Hin1II	CATG	3 cut(s)	502, 1375, 1470
Hin6I	GCGC	2 cut(s)	880, 1328
HinP1I	GCGC	2 cut(s)	880, 1328
HinfI	GANTC	9 cut(s)	6, 53, 151, 465, 669, 716, 886, 892, 936
HpaII	CCGG	2 cut(s)	1008, 1268
HphI	GGTGA	2 cut(s)	522, 664
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	7 cut(s)	33, 52, 61, 106, 358, 891, 1291
Hpy8I	GTNNAC	1 cut(s)	464
Hpy99I	CGWCG	2 cut(s)	61, 915
HpyAV	CCTTC	7 cut(s)	447, 543, 602, 687, 906, 1426, 1520
HpyCH4III	ACNGT	5 cut(s)	788, 976, 1045, 1069, 1405
HpyF10VI	GCNNNNNNNGC	8 cut(s)	191, 392, 425, 634, 842, 1223, 1334, 1576
HpyF3I	CTNAG	8 cut(s)	105, 114, 522, 567, 852, 1166, 1252, 1384
Hsp92II	CATG	3 cut(s)	502, 1375, 1470
HspAI	GCGC	2 cut(s)	880, 1328
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	4 cut(s)	525, 570, 708, 771
LmnI	GCTCC	3 cut(s)	75, 242, 439
Lsp1109I	GCAGC	6 cut(s)	298, 404, 428, 817, 820, 1024
LweI	GCATC	6 cut(s)	349, 597, 645, 958, 1331, 1552
MaeI	CTAG	3 cut(s)	543, 584, 827
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	527, 572, 710, 773
MboI	GATC	4 cut(s)	525, 570, 708, 771
MflI	RGATCY	2 cut(s)	525, 570
MhlI	GDGCHC	2 cut(s)	1136, 1318
MluCI	AATT	6 cut(s)	202, 610, 993, 1206, 1260, 1398
MlyI	GAGTC	1 cut(s)	459
MmeI	TCCRAC	5 cut(s)	39, 626, 973, 1013, 1237
MnlI	CCTC	8 cut(s)	4, 100, 109, 118, 256, 642, 717, 796
MseI	TTAA	3 cut(s)	269, 1014, 1304
MslI	CAYNNNNRTG	3 cut(s)	281, 1191, 1467
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	2 cut(s)	1008, 1268
MspR9I	CCNGG	2 cut(s)	163, 1009
Mva1269I	GAATGC	3 cut(s)	28, 921, 1009
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	882, 1328
MwoI	GCNNNNNNNGC	8 cut(s)	191, 392, 425, 634, 842, 1223, 1334, 1576
NciI	CCSGG	1 cut(s)	1009
NdeII	GATC	4 cut(s)	525, 570, 708, 771
NheI	GCTAGC	1 cut(s)	826
NlaIII	CATG	3 cut(s)	502, 1375, 1470
NlaIV	GGNNCC	1 cut(s)	1414
NmuCI	GTSAC	1 cut(s)	109
NspI	RCATGY	1 cut(s)	1470
OliI	CACNNNNGTG	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	1392
PagI	TCATGA	1 cut(s)	498
PciI	ACATGT	1 cut(s)	1466
PctI	GAATGC	3 cut(s)	28, 921, 1009
PfeI	GAWTC	8 cut(s)	6, 53, 151, 669, 716, 886, 892, 936
PkrI	GCNGC	6 cut(s)	288, 394, 418, 832, 835, 1039
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PscI	ACATGT	1 cut(s)	1466
Psp124BI	GAGCTC	1 cut(s)	1318
Psp6I	CCWGG	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	1414
PspPI	GGNCC	1 cut(s)	1265
PstI	CTGCAG	1 cut(s)	838
PsuI	RGATCY	2 cut(s)	525, 570
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	3 cut(s)	281, 1191, 1467
SacI	GAGCTC	1 cut(s)	1318
SaqAI	TTAA	3 cut(s)	269, 1014, 1304
SatI	GCNGC	6 cut(s)	287, 393, 417, 831, 834, 1038
Sau3AI	GATC	4 cut(s)	525, 570, 708, 771
Sau96I	GGNCC	1 cut(s)	1265
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	2 cut(s)	163, 1009
SduI	GDGCHC	2 cut(s)	1136, 1318
SfaNI	GCATC	6 cut(s)	349, 597, 645, 958, 1331, 1552
SfcI	CTRYAG	1 cut(s)	834
Sfr274I	CTCGAG	1 cut(s)	1392
SinI	GGWCC	1 cut(s)	1265
SlaI	CTCGAG	1 cut(s)	1392
SmiMI	CAYNNNNRTG	3 cut(s)	281, 1191, 1467
SmlI	CTYRAG	2 cut(s)	1317, 1392
SmoI	CTYRAG	2 cut(s)	1317, 1392
Sse9I	AATT	6 cut(s)	202, 610, 993, 1206, 1260, 1398
SsiI	CCGC	2 cut(s)	933, 1326
SspI	AATATT	2 cut(s)	1221, 1296
SspMI	CTAG	3 cut(s)	543, 584, 827
SstI	GAGCTC	1 cut(s)	1318
StyD4I	CCNGG	2 cut(s)	161, 1007
TaaI	ACNGT	5 cut(s)	788, 976, 1045, 1069, 1405
TaqI	TCGA	6 cut(s)	9, 370, 910, 1312, 1393, 1506
TasI	AATT	6 cut(s)	202, 610, 993, 1206, 1260, 1398
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	8 cut(s)	6, 53, 151, 669, 716, 886, 892, 936
Tru1I	TTAA	3 cut(s)	269, 1014, 1304
Tru9I	TTAA	3 cut(s)	269, 1014, 1304
TscAI	CASTG	6 cut(s)	118, 639, 793, 1182, 1392, 1437
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	6 cut(s)	286, 392, 416, 830, 833, 1037
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	7 cut(s)	113, 244, 459, 549, 565, 876, 1063
TspGWI	ACGGA	1 cut(s)	1203
TspRI	CASTG	6 cut(s)	118, 639, 793, 1182, 1392, 1437
VpaK11BI	GGWCC	1 cut(s)	1265
XceI	RCATGY	1 cut(s)	1470
XhoI	CTCGAG	1 cut(s)	1392
XmiI	GTMKAC	1 cut(s)	463
XspI	CTAG	3 cut(s)	543, 584, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.