Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8512857.1

Orthogroup ID

OG0003562

Physical Location & Seq

Genomic Coordinates Reverse (-)

2866 .. 3957

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8512857.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgattgccccggtttatattgctgagatatcacccaccattgccagaggctcactcacttcatttcctgaaatttttataaatctcggaattttgctgggctatgtttcaaactatgctttttctggtcttccagcacatataaactggaggataatgcttgcagtaggaattctgccttcaattttcattggttttgcacttttcataatccccgagtcccccaggtggttggtcatgcagaaccgcattgacgaggcaagatcagtgctgatgaaaacaaatgaggatcaaagtgaggtggaggagagactgaatgaaatacaagaggctgctggaaattccaatgcagacaagtacgaggagaaaagtgtggcgcgtgaactgttgagtccttctcctgcacttcgtaggatgctgatcactggttttggaattcaatgttttcaacagataacgggaatagatgcaacagtgtactacagccctgaaatcttcagacaagctggtatcgaggataaatcgaatctacttgctgcaactgttgctgtgggcgtcgccaagactgctttcatactggtggctattttgcttattgacaagcttggaagaaagcccttgctctatatcagcacaatcggaatgacaatctgtttattcagtttgggaattagtctctctgtactagggaagggacctattggtattgcatttgccattttgtcagtttgtgggaacgtagccttcttctctgttggaattggccctgtttgctgggttgtaacatctgaaatctttcctctaaggttgcgtgctcaagcatcagcgcttggagctgtgggtaacagggtctgcagtggcctaattgccatgtcttttctctcagtttctgatgcgatttcatttggcggaacattcttcatcttttctgcaatatcagctctttctgttttgtttgtctacaaacttgtcccagaaactaaaggaaagtcattggaacagattgagcttctttttcagactgacgaacttggatgggaaggaggtcaagttgaactaggagatgtcgagcaccttgtgcaaaaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

363

Amino Acids

39.31

Weight (kDa)

5.12

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20780 AT2G20780
fragaria_vesca	FvH4_3g04750 FvH4_3g04750 FvH4_3g04750 FvH4_5g27230
malus_domestica	MD05G1318100.v1.1 MD10G1297500.v1.1 MD17G1244000.v1.1
prunus_persica	Prupe.3G156900_v2.0.a1 Prupe.4G042700_v2.0.a1 Prupe.4G042700_v2.0.a1
pyrus_communis	pycom05g29450 pycom09g16810 pycom10g25100 pycom17g24690
rosa_chinensis	RchiOBHm_Chr5g0007771 RchiOBHm_Chr7g0218421
rosa_laevigata	RLG00000002377 RLG00000031487
rosa_multiflora	Rmu_co8512857.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068640 Rroxscaffold_3G00241020
rosa_rugosa	Rorug04G0430200 Rorug07G0177000
rosa_samantha	Rh5AG058700 Rh5BG055400 Rh5CG065200 Rh5DG054400 Rh7AG318200 Rh7BG310100 Rh7CG335000 Rh7DG317300
rosa_wichuraiana	Rw5G006110 Rw7G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	960
AccII	CGCG	1 cut(s)	379
AciI	CCGC	2 cut(s)	247, 909
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	5 cut(s)	72, 90, 171, 340, 435
AcuI	CTGAAG	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	1078
AfaI	GTAC	3 cut(s)	359, 479, 684
AfeI	AGCGCT	1 cut(s)	828
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	5 cut(s)	111, 183, 440, 449, 1055
AjnI	CCWGG	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	5 cut(s)	506, 604, 836, 941, 1009
AluI	AGCT	5 cut(s)	506, 604, 836, 941, 1009
Alw21I	GWGCWC	2 cut(s)	817, 1074
Alw26I	GTCTC	2 cut(s)	304, 680
AlwI	GGATC	1 cut(s)	297
AlwNI	CAGNNNCTG	2 cut(s)	852, 890
Ama87I	CYCGRG	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	828
AoxI	GGCC	2 cut(s)	763, 859
ApeKI	GCWGC	2 cut(s)	332, 536
ApoI	RAATTY	5 cut(s)	72, 90, 171, 340, 435
Asp700I	GAANNNNTTC	1 cut(s)	795
AspLEI	GCGC	2 cut(s)	379, 829
AspS9I	GGNCC	2 cut(s)	695, 764
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	817, 1074
BbvI	GCAGC	2 cut(s)	319, 523
BccI	CCATC	1 cut(s)	1029
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	2 cut(s)	304, 680
BfaI	CTAG	2 cut(s)	686, 1058
BfmI	CTRYAG	2 cut(s)	481, 853
BfoI	RGCGCY	1 cut(s)	830
BisI	GCNGC	2 cut(s)	333, 537
BlsI	GCNGC	2 cut(s)	334, 538
Bme1390I	CCNGG	2 cut(s)	11, 226
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	2 cut(s)	695, 764
BmiI	GGNNCC	1 cut(s)	696
BmrFI	CCNGG	2 cut(s)	11, 226
BmsI	GCATC	4 cut(s)	405, 457, 830, 883
BpiI	GAAGAC	1 cut(s)	122
BplI	GAGNNNNNCTC	4 cut(s)	39, 71, 382, 414
BpmI	CTGGAG	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	801
BpuMI	CCSGG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	9, 224
BsaXI	ACNNNNNCTCC	2 cut(s)	1035, 1065
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	3 cut(s)	152, 430, 582
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	9, 224
BseGI	GGATG	2 cut(s)	420, 1040
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	15, 897
BseNI	ACTGG	3 cut(s)	152, 430, 582
BseRI	GAGGAG	2 cut(s)	320, 377
BseXI	GCAGC	2 cut(s)	319, 523
BseYI	CCCAGC	2 cut(s)	97, 774
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	2 cut(s)	765, 861
BsiHKAI	GWGCWC	2 cut(s)	817, 1074
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	3 cut(s)	205, 708, 956
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	2 cut(s)	304, 680
BsmFI	GGGAC	3 cut(s)	205, 708, 956
BsnI	GGCC	2 cut(s)	765, 861
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	817, 1074
Bsp143I	GATC	3 cut(s)	263, 289, 420
BspACI	CCGC	2 cut(s)	247, 909
BspANI	GGCC	2 cut(s)	765, 861
BspCNI	CTCAG	2 cut(s)	16, 896
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	696
BspMAI	CTGCAG	1 cut(s)	857
BspPI	GGATC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	152, 430, 582
BssECI	CCNNGG	2 cut(s)	9, 224
BssMI	GATC	3 cut(s)	263, 289, 420
BssNI	GRCGYC	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	387, 475, 544
BstACI	GRCGYC	1 cut(s)	555
BstAPI	GCANNNNNTGC	2 cut(s)	545, 1078
BstC8I	GCNNGC	2 cut(s)	162, 813
BstDEI	CTNAG	3 cut(s)	24, 803, 883
BstF5I	GGATG	2 cut(s)	420, 1040
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	2 cut(s)	379, 829
BstKTI	GATC	3 cut(s)	266, 292, 423
BstMAI	GTCTC	2 cut(s)	304, 680
BstMBI	GATC	3 cut(s)	263, 289, 420
BstMWI	GCNNNNNNNGC	6 cut(s)	545, 566, 771, 833, 938, 1078
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	9, 224
BstSFI	CTRYAG	2 cut(s)	481, 853
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	319, 523
BstV2I	GAAGAC	1 cut(s)	122
BstXI	CCANNNNNNTGG	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	765, 861
BtsCI	GGATG	2 cut(s)	420, 1040
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	4 cut(s)	273, 423, 480, 862
Cac8I	GCNNGC	2 cut(s)	162, 813
CaiI	CAGNNNCTG	2 cut(s)	852, 890
CfoI	GCGC	2 cut(s)	379, 829
Cfr13I	GGNCC	2 cut(s)	695, 764
CseI	GACGC	1 cut(s)	544
Csp6I	GTAC	3 cut(s)	358, 478, 683
CviAII	CATG	2 cut(s)	238, 871
CviQI	GTAC	3 cut(s)	358, 478, 683
DdeI	CTNAG	3 cut(s)	24, 803, 883
DpnI	GATC	3 cut(s)	265, 291, 422
DpnII	GATC	3 cut(s)	263, 289, 420
DraIII	CACNNNGTG	1 cut(s)	1078
EciI	GGCGGA	1 cut(s)	924
Eco32I	GATATC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	695
Eco47III	AGCGCT	1 cut(s)	828
Eco57I	CTGAAG	1 cut(s)	481
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	171, 435
EcoRII	CCWGG	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	30
FaeI	CATG	2 cut(s)	241, 874
FaqI	GGGAC	3 cut(s)	205, 708, 956
FatI	CATG	2 cut(s)	237, 870
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	2 cut(s)	333, 537
FokI	GGATG	2 cut(s)	427, 1047
Fsp4HI	GCNGC	2 cut(s)	333, 537
FspBI	CTAG	2 cut(s)	686, 1058
GlaI	GCGC	2 cut(s)	378, 828
GluI	GCNGC	2 cut(s)	333, 537
GsaI	CCCAGC	2 cut(s)	101, 778
GsuI	CTGGAG	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	830
HaeIII	GGCC	2 cut(s)	765, 861
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	544
HhaI	GCGC	2 cut(s)	379, 829
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	2 cut(s)	241, 874
Hin6I	GCGC	2 cut(s)	377, 827
HinP1I	GCGC	2 cut(s)	377, 827
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	218, 391, 526
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	3 cut(s)	383, 478, 961
Hpy188I	TCNGA	6 cut(s)	89, 500, 641, 790, 892, 1020
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	3 cut(s)	383, 478, 961
Hpy99I	CGWCG	1 cut(s)	560
HpyAV	CCTTC	5 cut(s)	189, 405, 685, 754, 1034
HpyCH4III	ACNGT	3 cut(s)	387, 475, 544
HpyCH4IV	ACGT	1 cut(s)	738
HpyF10VI	GCNNNNNNNGC	6 cut(s)	545, 566, 771, 833, 938, 1078
HpyF3I	CTNAG	3 cut(s)	24, 803, 883
HpySE526I	ACGT	1 cut(s)	738
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	241, 874
HspAI	GCGC	2 cut(s)	377, 827
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	3 cut(s)	263, 289, 420
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	2 cut(s)	319, 523
LweI	GCATC	4 cut(s)	405, 457, 830, 883
MaeI	CTAG	2 cut(s)	686, 1058
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	2 cut(s)	781, 842
MalI	GATC	3 cut(s)	265, 291, 422
MboI	GATC	3 cut(s)	263, 289, 420
MboII	GAAGA	5 cut(s)	122, 487, 621, 739, 910
MhlI	GDGCHC	2 cut(s)	817, 1074
MluCI	AATT	9 cut(s)	72, 90, 171, 183, 340, 435, 669, 759, 864
MlyI	GAGTC	2 cut(s)	227, 400
MmeI	TCCRAC	1 cut(s)	736
MroXI	GAANNNNTTC	1 cut(s)	795
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	11, 226
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	6 cut(s)	545, 566, 771, 833, 938, 1078
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	263, 289, 420
NlaIII	CATG	2 cut(s)	241, 874
NlaIV	GGNNCC	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	334, 538
PleI	GAGTC	2 cut(s)	226, 399
PpsI	GAGTC	2 cut(s)	226, 399
PpuMI	RGGWCCY	1 cut(s)	695
PsiI	TTATAA	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	224
PspFI	CCCAGC	2 cut(s)	97, 774
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	696
PspPI	GGNCC	2 cut(s)	695, 764
PspPPI	RGGWCCY	1 cut(s)	695
PstI	CTGCAG	1 cut(s)	857
PstNI	CAGNNNCTG	2 cut(s)	852, 890
RsaI	GTAC	3 cut(s)	359, 479, 684
RsaNI	GTAC	3 cut(s)	358, 478, 683
RseI	CAYNNNNRTG	1 cut(s)	578
SatI	GCNGC	2 cut(s)	333, 537
Sau3AI	GATC	3 cut(s)	263, 289, 420
Sau96I	GGNCC	2 cut(s)	695, 764
SchI	GAGTC	2 cut(s)	227, 400
ScrFI	CCNGG	2 cut(s)	11, 226
SduI	GDGCHC	2 cut(s)	817, 1074
SfaNI	GCATC	4 cut(s)	405, 457, 830, 883
SfcI	CTRYAG	2 cut(s)	481, 853
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	816
SmoI	CTYRAG	1 cut(s)	816
Sse9I	AATT	9 cut(s)	72, 90, 171, 183, 340, 435, 669, 759, 864
SsiI	CCGC	2 cut(s)	247, 909
SspMI	CTAG	2 cut(s)	686, 1058
StyD4I	CCNGG	2 cut(s)	9, 224
TaaI	ACNGT	3 cut(s)	387, 475, 544
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	3 cut(s)	513, 524, 1068
TasI	AATT	9 cut(s)	72, 90, 171, 183, 340, 435, 669, 759, 864
TatI	WGTACW	2 cut(s)	477, 682
TfiI	GAWTC	1 cut(s)	526
TscAI	CASTG	4 cut(s)	273, 430, 480, 862
TseI	GCWGC	2 cut(s)	332, 536
TspDTI	ATGAA	8 cut(s)	51, 178, 196, 290, 333, 562, 891, 910
TspRI	CASTG	4 cut(s)	273, 430, 480, 862
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	5 cut(s)	72, 90, 171, 340, 435
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	2 cut(s)	686, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.