Rh5AG058700
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
5053113 .. 5055698
2586 bp
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UTR
Exon/CDS
Intron
Rh5AG058700.1

Sequence Viewer

Length: 1593 bp
ATGGGTTTTGAGGAAAACAGGAATGCTGGTCAGAATGGAGTGTTTGGGTCTGACTCGTCCGAGTTTCAACTCGGGAGCAAGAACAAATACAAGAGAATGAAGTCTGAGGTAACAGAAGAAGAAGAAGAAGAAGATGGTTCATTCACAAAGGAGAATCGTGGAACAAAGAAATATGTGTTTGCTTGTGCCATCTTTGCTTCTCTCAATTCTGTGCTGCTTGGATATGATGTGGGTGTTATGAGTGGAGCTATTCTCTTCATTCAGGAGGATTTGAAAATCACAGTTGTACAACAAGAACTTCTTGTTGGGATTTTGAGCATAATCTCCCTATTGGGTAGTTTAGCAGGTGGGAAAACATCAGACGCCATTGGTCGAAAATGGACAATTGCATTTGCAGCCTTTATCTTTCAGACAGGTGCTGCTGTAATGGCACTTGCTCCTTCTTATGAAGTATTGATGATTGGTAGACTCTTTGCTGGGATTGGTATAGGATTTGGGGTCATGATTGCACCTGTATATATTGCTGAGATCTCACCTTCAGTAGCTAGGGGTTCGCTTACTTCATTTCCTGAGATCTTTATAAATCTAGGCATCCTTCTTGGATACATATCGAATTATGCTTTCTCGGGGCTTCCAGTGCATATAAGCTGGAGGGTGATGCTTGGTGTGGGAATCATACCTTCAGTCTTTCTTGGATTTGCTCTTTTTGTGATCCCCGAATCCCCAAGGTGGTTAGTTATGCAGAACAGGATTGAAGAAGCGAGAATAGTATTGACCAAGACGAATGAAAGTGAAAAAGAAGTTGAGGAGAGATTGGCAGAAATTCAGCTAGCTGCTGCAGGGATGGCTAATGCTGAGAATAATGAAGCAAAAGCTATATGGCGCGAAATTCTGAATCCTTCTCCCCCAGTTCGACGAATGCTGATTACCGGTTGTGGAATCCAATGTTTCCAACAGATTACAGGCATTGATGCAACTGTGTATTATAGTCCAACCATTTTCAAAAATGCCGGAATTAAAGGCAACACTCAACTTCTTGCTGCAACTGTTATTGTTGGGGTTACAAAGACTCTGTTCATCTTGGTAGCTATCTTTCTTATTGACAAAGTGGGCAGAAGGCCTTTGCTTTATGTGAGCACTATTGGAATGACTACTTGCTTACTTGGTCTGAGCCTTGCACTGGCTTTTCTTGGAAATGGAAAACTTGGAATTGGATTGGCAATATTAGCCGTTTGTGGAAATGTAGCGTTCTTCTCAGTTGGAATTGGCCCGGTTTGTTGGGTCTTGTCATCTGAAATCTTCCCTCTAAGGCTTCGAGCTCAAGCATCTGCGCTTGGGGCAGTTGGTAGTAGGGTTAGTAGTGGTGTGATTACCATGTCATTTCTCTCGGTATCTCGAGCAATTACAGTAGCAGGAACCTTCTTTGTTTTTTCAGTGATTTCAGCACTCTCGGTTGTTTTTGTTCATACTTGTGTTCCGGAAACAAAAGGGAAGTCTTTAGAAGAAATCGAAATGATTTTCCATCATGAAGGGGAGTGGCAAGGAAGTGAAGTAGAAATGGGAGATGCACAGCGTCTAATGCAAAAAGAATAA

Protein Analysis

530

Amino Acids

57.11

Weight (kDa)

5.83

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 62 - 507 1.1e-111 Sugar (and other) transporter
MFS_1 PF07690 68 - 456 5.2e-33 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 581
AarI CACCTGC 1 cut(s) 335
Acc36I ACCTGC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 466
AccII CGCG 1 cut(s) 885
AccIII TCCGGA 1 cut(s) 1477
AclWI GGATC 1 cut(s) 706
AcsI RAATTY 2 cut(s) 822, 888
AcuI CTGAAG 2 cut(s) 522, 666
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 729, 1180
AgeI ACCGGT 1 cut(s) 929
AgsI TTSAA 4 cut(s) 68, 274, 755, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 8 cut(s) 248, 545, 648, 829, 833, 875, 1088, 1319
AluI AGCT 8 cut(s) 248, 545, 648, 829, 833, 875, 1088, 1319
Alw21I GWGCWC 2 cut(s) 1139, 1321
AlwI GGATC 1 cut(s) 706
AlwNI CAGNNNCTG 1 cut(s) 419
Ama87I CYCGRG 3 cut(s) 71, 625, 1395
Aor13HI TCCGGA 1 cut(s) 1477
AoxI GGCC 2 cut(s) 1118, 1267
ApeKI GCWGC 6 cut(s) 214, 395, 419, 833, 836, 1040
ApoI RAATTY 2 cut(s) 822, 888
ArsI GACNNNNNNTTYG 2 cut(s) 1478, 1510
AsiGI ACCGGT 1 cut(s) 929
AspLEI GCGC 2 cut(s) 885, 1333
AspS9I GGNCC 1 cut(s) 1268
AsuC2I CCSGG 1 cut(s) 1271
AsuHPI GGTGA 2 cut(s) 525, 667
AsuNHI GCTAGC 1 cut(s) 829
AvaI CYCGRG 3 cut(s) 71, 625, 1395
BanII GRGCYC 1 cut(s) 1321
Bbv12I GWGCWC 2 cut(s) 1139, 1321
BbvI GCAGC 6 cut(s) 201, 406, 407, 820, 823, 1027
BccI CCATC 4 cut(s) 128, 197, 838, 1530
BceAI ACGGC 1 cut(s) 1214
BciVI GTATCC 1 cut(s) 596
BcnI CCSGG 1 cut(s) 1271
BfaI CTAG 3 cut(s) 546, 587, 830
BfmI CTRYAG 1 cut(s) 837
BfuAI ACCTGC 1 cut(s) 335
BfuI GTATCC 1 cut(s) 596
BglII AGATCT 2 cut(s) 528, 573
BisI GCNGC 6 cut(s) 215, 396, 420, 834, 837, 1041
BlsI GCNGC 6 cut(s) 216, 397, 421, 835, 838, 1042
Bme1390I CCNGG 1 cut(s) 1271
BmeT110I CYCGRG 3 cut(s) 71, 625, 1395
BmgT120I GGNCC 1 cut(s) 1268
BmiI GGNNCC 1 cut(s) 1417
BmrFI CCNGG 1 cut(s) 1271
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 5 cut(s) 600, 648, 961, 1334, 1555
BmtI GCTAGC 1 cut(s) 833
BmuI ACTGGG 1 cut(s) 902
BplI GAGNNNNNCTC 2 cut(s) 237, 269
BpmI CTGGAG 1 cut(s) 670
BpuEI CTTGAG 1 cut(s) 1305
BpuMI CCSGG 1 cut(s) 1271
BsaBI GATNNNNATC 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 725
BsaWI WCCGGW 2 cut(s) 929, 1477
Bsc4I CCNNNNNNNGG 2 cut(s) 729, 1180
Bse118I RCCGGY 1 cut(s) 929
Bse1I ACTGG 3 cut(s) 635, 908, 1185
Bse8I GATNNNNATC 1 cut(s) 607
BseAI TCCGGA 1 cut(s) 1477
BseDI CCNNGG 1 cut(s) 725
BseGI GGATG 2 cut(s) 591, 849
BseJI GATNNNNATC 1 cut(s) 607
BseLI CCNNNNNNNGG 2 cut(s) 729, 1180
BseMII CTCAG 6 cut(s) 96, 516, 561, 846, 1160, 1269
BseNI ACTGG 3 cut(s) 635, 908, 1185
BseRI GAGGAG 1 cut(s) 821
BseXI GCAGC 6 cut(s) 201, 406, 407, 820, 823, 1027
BseYI CCCAGC 1 cut(s) 476
Bsh1236I CGCG 1 cut(s) 885
BshFI GGCC 2 cut(s) 1120, 1269
BshTI ACCGGT 1 cut(s) 929
BsiHKAI GWGCWC 2 cut(s) 1139, 1321
BsiHKCI CYCGRG 3 cut(s) 71, 625, 1395
BsiSI CCGG 4 cut(s) 930, 1011, 1271, 1478
BslI CCNNNNNNNGG 2 cut(s) 729, 1180
BsmI GAATGC 2 cut(s) 28, 924
BsnI GGCC 2 cut(s) 1120, 1269
BsoBI CYCGRG 3 cut(s) 71, 625, 1395
Bsp1286I GDGCHC 2 cut(s) 1139, 1321
Bsp13I TCCGGA 1 cut(s) 1477
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 3 cut(s) 528, 573, 711
BspANI GGCC 2 cut(s) 1120, 1269
BspCNI CTCAG 6 cut(s) 97, 517, 562, 847, 1161, 1268
BspEI TCCGGA 1 cut(s) 1477
BspFNI CGCG 1 cut(s) 885
BspHI TCATGA 2 cut(s) 501, 1525
BspLI GGNNCC 1 cut(s) 1417
BspMAI CTGCAG 1 cut(s) 841
BspMI ACCTGC 1 cut(s) 335
BspOI GCTAGC 1 cut(s) 833
BspPI GGATC 1 cut(s) 706
BsrFI RCCGGY 1 cut(s) 929
BsrGI TGTACA 1 cut(s) 286
BsrI ACTGG 3 cut(s) 635, 908, 1185
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 725
BssMI GATC 3 cut(s) 528, 573, 711
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 725
Bst4CI ACNGT 4 cut(s) 283, 979, 1048, 1408
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 363
BstAUI TGTACA 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 831
BstDEI CTNAG 7 cut(s) 105, 525, 570, 855, 1169, 1255, 1307
BstF5I GGATG 2 cut(s) 591, 849
BstFNI CGCG 1 cut(s) 885
BstHHI GCGC 2 cut(s) 885, 1333
BstKTI GATC 3 cut(s) 531, 576, 714
BstMBI GATC 3 cut(s) 528, 573, 711
BstMWI GCNNNNNNNGC 8 cut(s) 194, 395, 428, 637, 845, 1226, 1337, 1579
BstSCI CCNGG 1 cut(s) 1269
BstSFI CTRYAG 1 cut(s) 837
BstUI CGCG 1 cut(s) 885
BstV1I GCAGC 6 cut(s) 201, 406, 407, 820, 823, 1027
BstX2I RGATCY 2 cut(s) 528, 573
BstYI RGATCY 2 cut(s) 528, 573
BsuI GTATCC 1 cut(s) 596
BsuRI GGCC 2 cut(s) 1120, 1269
BtsCI GGATG 2 cut(s) 591, 849
BtsIMutI CAGTG 3 cut(s) 642, 1178, 1440
BveI ACCTGC 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 831
CaiI CAGNNNCTG 1 cut(s) 419
CciI TCATGA 2 cut(s) 501, 1525
CfoI GCGC 2 cut(s) 885, 1333
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 1 cut(s) 1268
CseI GACGC 2 cut(s) 371, 1562
Csp6I GTAC 1 cut(s) 287
CspAI ACCGGT 1 cut(s) 929
CviAII CATG 3 cut(s) 502, 1375, 1526
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 7 cut(s) 105, 525, 570, 855, 1169, 1255, 1307
DpnI GATC 3 cut(s) 530, 575, 713
DpnII GATC 3 cut(s) 528, 573, 711
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 1319
Eco130I CCWWGG 1 cut(s) 725
Eco147I AGGCCT 1 cut(s) 1120
Eco24I GRGCYC 1 cut(s) 1321
Eco53kI GAGCTC 1 cut(s) 1319
Eco57I CTGAAG 2 cut(s) 522, 666
Eco88I CYCGRG 3 cut(s) 71, 625, 1395
EcoICRI GAGCTC 1 cut(s) 1319
EcoT14I CCWWGG 1 cut(s) 725
EcoT38I GRGCYC 1 cut(s) 1321
ErhI CCWWGG 1 cut(s) 725
FaeI CATG 3 cut(s) 505, 1378, 1529
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 3 cut(s) 501, 1374, 1525
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 6 cut(s) 215, 396, 420, 834, 837, 1041
FokI GGATG 2 cut(s) 578, 856
FriOI GRGCYC 1 cut(s) 1321
Fsp4HI GCNGC 6 cut(s) 215, 396, 420, 834, 837, 1041
FspBI CTAG 3 cut(s) 546, 587, 830
GlaI GCGC 2 cut(s) 884, 1332
GluI GCNGC 6 cut(s) 215, 396, 420, 834, 837, 1041
GsaI CCCAGC 1 cut(s) 480
GsuI CTGGAG 1 cut(s) 670
HaeIII GGCC 2 cut(s) 1120, 1269
HapII CCGG 4 cut(s) 930, 1011, 1271, 1478
HgaI GACGC 2 cut(s) 371, 1562
HhaI GCGC 2 cut(s) 885, 1333
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 3 cut(s) 505, 1378, 1529
Hin6I GCGC 2 cut(s) 883, 1331
HinP1I GCGC 2 cut(s) 883, 1331
HinfI GANTC 8 cut(s) 53, 154, 468, 672, 719, 895, 939, 1069
HpaII CCGG 4 cut(s) 930, 1011, 1271, 1478
HphI GGTGA 2 cut(s) 525, 667
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 9 cut(s) 33, 52, 61, 106, 361, 411, 894, 1170, 1294
Hpy188III TCNNGA 7 cut(s) 73, 263, 502, 569, 1395, 1478, 1526
Hpy8I GTNNAC 1 cut(s) 467
Hpy99I CGWCG 1 cut(s) 918
HpyAV CCTTC 8 cut(s) 450, 546, 605, 690, 909, 1110, 1429, 1523
HpyCH4III ACNGT 4 cut(s) 283, 979, 1048, 1408
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 395, 428, 637, 845, 1226, 1337, 1579
HpyF3I CTNAG 7 cut(s) 105, 525, 570, 855, 1169, 1255, 1307
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 3 cut(s) 505, 1378, 1529
HspAI GCGC 2 cut(s) 883, 1331
Kpn2I TCCGGA 1 cut(s) 1477
Kzo9I GATC 3 cut(s) 528, 573, 711
LmnI GCTCC 3 cut(s) 75, 245, 442
Lsp1109I GCAGC 6 cut(s) 201, 406, 407, 820, 823, 1027
LweI GCATC 5 cut(s) 600, 648, 961, 1334, 1555
MaeI CTAG 3 cut(s) 546, 587, 830
MaeIII GTNAC 2 cut(s) 109, 1060
MalI GATC 3 cut(s) 530, 575, 713
MboI GATC 3 cut(s) 528, 573, 711
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 2 cut(s) 528, 573
MhlI GDGCHC 2 cut(s) 1139, 1321
MluCI AATT 9 cut(s) 205, 384, 613, 822, 888, 1014, 1209, 1263, 1401
MlyI GAGTC 3 cut(s) 47, 462, 1063
MmeI TCCRAC 3 cut(s) 976, 1016, 1240
MnlI CCTC 6 cut(s) 4, 100, 259, 645, 799, 1314
MroI TCCGGA 1 cut(s) 1477
MseI TTAA 1 cut(s) 1017
MslI CAYNNNNRTG 1 cut(s) 1470
MspI CCGG 4 cut(s) 930, 1011, 1271, 1478
MspR9I CCNGG 1 cut(s) 1271
MunI CAATTG 1 cut(s) 384
Mva1269I GAATGC 2 cut(s) 28, 924
MvnI CGCG 1 cut(s) 885
MwoI GCNNNNNNNGC 8 cut(s) 194, 395, 428, 637, 845, 1226, 1337, 1579
NciI CCSGG 1 cut(s) 1271
NdeII GATC 3 cut(s) 528, 573, 711
NheI GCTAGC 1 cut(s) 829
NlaIII CATG 3 cut(s) 505, 1378, 1529
NlaIV GGNNCC 1 cut(s) 1417
PaeR7I CTCGAG 1 cut(s) 1395
PagI TCATGA 2 cut(s) 501, 1525
PaqCI CACCTGC 1 cut(s) 335
PceI AGGCCT 1 cut(s) 1120
PctI GAATGC 2 cut(s) 28, 924
PfeI GAWTC 5 cut(s) 154, 672, 719, 895, 939
PinAI ACCGGT 1 cut(s) 929
PkrI GCNGC 6 cut(s) 216, 397, 421, 835, 838, 1042
PleI GAGTC 3 cut(s) 47, 462, 1063
PpsI GAGTC 3 cut(s) 47, 462, 1063
PsiI TTATAA 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 1321
PspFI CCCAGC 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 1417
PspPI GGNCC 1 cut(s) 1268
PstI CTGCAG 1 cut(s) 841
PstNI CAGNNNCTG 1 cut(s) 419
PsuI RGATCY 2 cut(s) 528, 573
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 1470
SacI GAGCTC 1 cut(s) 1321
SaqAI TTAA 1 cut(s) 1017
SatI GCNGC 6 cut(s) 215, 396, 420, 834, 837, 1041
Sau3AI GATC 3 cut(s) 528, 573, 711
Sau96I GGNCC 1 cut(s) 1268
SchI GAGTC 3 cut(s) 47, 462, 1063
ScrFI CCNGG 1 cut(s) 1271
SduI GDGCHC 2 cut(s) 1139, 1321
SfaNI GCATC 5 cut(s) 600, 648, 961, 1334, 1555
SfcI CTRYAG 1 cut(s) 837
Sfr274I CTCGAG 1 cut(s) 1395
SlaI CTCGAG 1 cut(s) 1395
SmiMI CAYNNNNRTG 1 cut(s) 1470
SmlI CTYRAG 2 cut(s) 1320, 1395
SmoI CTYRAG 2 cut(s) 1320, 1395
Sse9I AATT 9 cut(s) 205, 384, 613, 822, 888, 1014, 1209, 1263, 1401
SseBI AGGCCT 1 cut(s) 1120
SspI AATATT 1 cut(s) 1224
SspMI CTAG 3 cut(s) 546, 587, 830
SstI GAGCTC 1 cut(s) 1321
StuI AGGCCT 1 cut(s) 1120
StyD4I CCNGG 1 cut(s) 1269
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 4 cut(s) 283, 979, 1048, 1408
TaqI TCGA 6 cut(s) 373, 611, 913, 1315, 1396, 1509
TasI AATT 9 cut(s) 205, 384, 613, 822, 888, 1014, 1209, 1263, 1401
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 5 cut(s) 154, 672, 719, 895, 939
Tru1I TTAA 1 cut(s) 1017
Tru9I TTAA 1 cut(s) 1017
TscAI CASTG 3 cut(s) 642, 1185, 1440
TseI GCWGC 6 cut(s) 214, 395, 419, 833, 836, 1040
TspRI CASTG 3 cut(s) 642, 1185, 1440
XapI RAATTY 2 cut(s) 822, 888
XhoI CTCGAG 1 cut(s) 1395
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 3 cut(s) 546, 587, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.