Rw5G006110
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
6304441 .. 6306674
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006110.1

Sequence Viewer

Length: 1596 bp
ATGGGTTTTGAGGAAAACAGGAATGCTGGTCAGAATGGAGTGTTTGGGTCTGACTCGTCCGAGTTTCAACTCGGGAGCAAGAACAAATACAAGAGAATGAAGTCTGAGGTAACAGAAGAAGAAGAAGAAGAAGAAGATGGTTCATTCACAAAGGAGAATCGTGGAACAAAGAAATATGTGTTTGCTTGTGCCATCTTTGCTTCTCTCAATTCTGTGCTGCTTGGATATGATGTGGGTGTTATGAGTGGAGCTATTCTCTTCATTCAGGAGGATTTGAAAATCACAGTTGTACAACAAGAACTTCTTGTTGGGATTTTGAGCATAATCTCCCTATTGGGTAGTTTAGCAGGTGGGAAAACATCAGACGCCATTGGTCGAAAATGGACAATTGCATTTGCAGCCTTTATCTTTCAGACAGGTGCTGCTGTAATGGCACTTGCTCCTTCTTATGAAGTATTGATGATTGGTAGACTCTTTGCTGGGATTGGTATAGGATTTGGGGTCATGATTGCACCTGTATATATTGCTGAGATCTCACCTTCAGTAGCTAGGGGTTCGCTTACTTCATTTCCTGAGATCTTTATAAATCTAGGCATCCTTCTTGGATACATATCGAATTATGCTTTCTCGGGGCTTCCAGTGCATATAAGCTGGAGGGTGATGCTTGGTGTGGGAATCATACCTTCAGTCTTTCTTGGATTTGCTCTTTTTGTGATCCCCGAATCCCCAAGGTGGTTAGTTATGCAGAACAGGATTGAAGAAGCGAGAATAGTATTGACCAAGACGAATGAAAGTGAAAAAGAAGTTGAGGAGAGATTGGCAGAAATTCAGCTAGCTGCTGCAGGGATGGCTAATGCTGAGAATAATGAAGCAAAAGCTATATGGCGCGAAATTCTGAATCCTTCTCCCCCAGTTCGACGAATGCTGATTACCGGTTGTGGAATCCAATGTTTCCAACAGATTACAGGCATTGATGCAACTGTGTATTATAGTCCAACCATTTTCAAAAATGCCGGAATTAAAGGCAACACTCAACTTCTTGCTGCAACTGTTATTGTTGGGGTTACAAAGACTCTGTTCATCTTGGTAGCTATCTTTCTTATTGACAAAGTGGGCAGAAGGCCTTTGCTTTATGTGAGCACTATTGGAATGACTACTTGCTTACTTGGTCTGAGCCTTGCACTGGCTTTTCTTGGAAATGGAAAACTTGGAATTGGATTGGCAATATTAGCCGTTTGTGGAAATGTAGCGTTCTTCTCAGTTGGAATTGGCCCGGTTTGTTGGGTCTTGTCATCTGAAATCTTCCCTCTAAGGCTTCGAGCTCAAGCATCTGCGCTTGGGGCAGTTGGTAGTAGGGTTAGTAGTGGTGTGATTACCATGTCATTTCTCTCGGTATCTCGAGCAATTACAGTAGCAGGAACCTTCTTTGTTTTTTCAGTGATTTCAGCACTCTCGGTTGTTTTTGTTCATACTTGTGTTCCGGAAACAAAAGGGAAGTCTTTAGAAGAAATCGAAATGATTTTCCATCATGAAGGGGAGTGGCAAGGAAGTGAAGTAGAAATGGGAGATGCACAGCGTCTAATGCAAAAAGAATAA

Protein Analysis

531

Amino Acids

57.24

Weight (kDa)

5.69

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 63 - 508 1.1e-111 Sugar (and other) transporter
MFS_1 PF07690 69 - 457 5.3e-33 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 469
AccII CGCG 1 cut(s) 888
AccIII TCCGGA 1 cut(s) 1480
AclWI GGATC 1 cut(s) 709
AcsI RAATTY 2 cut(s) 825, 891
AcuI CTGAAG 2 cut(s) 525, 669
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 2 cut(s) 732, 1183
AgeI ACCGGT 1 cut(s) 932
AgsI TTSAA 4 cut(s) 68, 277, 758, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 8 cut(s) 251, 548, 651, 832, 836, 878, 1091, 1322
AluI AGCT 8 cut(s) 251, 548, 651, 832, 836, 878, 1091, 1322
Alw21I GWGCWC 2 cut(s) 1142, 1324
AlwI GGATC 1 cut(s) 709
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 3 cut(s) 71, 628, 1398
Aor13HI TCCGGA 1 cut(s) 1480
AoxI GGCC 2 cut(s) 1121, 1270
ApeKI GCWGC 6 cut(s) 217, 398, 422, 836, 839, 1043
ApoI RAATTY 2 cut(s) 825, 891
ArsI GACNNNNNNTTYG 2 cut(s) 1481, 1513
AsiGI ACCGGT 1 cut(s) 932
AspLEI GCGC 2 cut(s) 888, 1336
AspS9I GGNCC 1 cut(s) 1271
AsuC2I CCSGG 1 cut(s) 1274
AsuHPI GGTGA 2 cut(s) 528, 670
AsuNHI GCTAGC 1 cut(s) 832
AvaI CYCGRG 3 cut(s) 71, 628, 1398
BanII GRGCYC 1 cut(s) 1324
Bbv12I GWGCWC 2 cut(s) 1142, 1324
BbvI GCAGC 6 cut(s) 204, 409, 410, 823, 826, 1030
BccI CCATC 4 cut(s) 131, 200, 841, 1533
BceAI ACGGC 1 cut(s) 1217
BciVI GTATCC 1 cut(s) 599
BcnI CCSGG 1 cut(s) 1274
BfaI CTAG 3 cut(s) 549, 590, 833
BfmI CTRYAG 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 1 cut(s) 599
BglII AGATCT 2 cut(s) 531, 576
BisI GCNGC 6 cut(s) 218, 399, 423, 837, 840, 1044
BlsI GCNGC 6 cut(s) 219, 400, 424, 838, 841, 1045
Bme1390I CCNGG 1 cut(s) 1274
BmeT110I CYCGRG 3 cut(s) 71, 628, 1398
BmgT120I GGNCC 1 cut(s) 1271
BmiI GGNNCC 1 cut(s) 1420
BmrFI CCNGG 1 cut(s) 1274
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 5 cut(s) 603, 651, 964, 1337, 1558
BmtI GCTAGC 1 cut(s) 836
BmuI ACTGGG 1 cut(s) 905
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BpmI CTGGAG 1 cut(s) 673
BpuEI CTTGAG 1 cut(s) 1308
BpuMI CCSGG 1 cut(s) 1274
BsaBI GATNNNNATC 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 728
BsaWI WCCGGW 2 cut(s) 932, 1480
Bsc4I CCNNNNNNNGG 2 cut(s) 732, 1183
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 3 cut(s) 638, 911, 1188
Bse8I GATNNNNATC 1 cut(s) 610
BseAI TCCGGA 1 cut(s) 1480
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 2 cut(s) 594, 852
BseJI GATNNNNATC 1 cut(s) 610
BseLI CCNNNNNNNGG 2 cut(s) 732, 1183
BseMII CTCAG 6 cut(s) 96, 519, 564, 849, 1163, 1272
BseNI ACTGG 3 cut(s) 638, 911, 1188
BseRI GAGGAG 1 cut(s) 824
BseXI GCAGC 6 cut(s) 204, 409, 410, 823, 826, 1030
BseYI CCCAGC 1 cut(s) 479
Bsh1236I CGCG 1 cut(s) 888
BshFI GGCC 2 cut(s) 1123, 1272
BshTI ACCGGT 1 cut(s) 932
BsiHKAI GWGCWC 2 cut(s) 1142, 1324
BsiHKCI CYCGRG 3 cut(s) 71, 628, 1398
BsiSI CCGG 4 cut(s) 933, 1014, 1274, 1481
BslI CCNNNNNNNGG 2 cut(s) 732, 1183
BsmI GAATGC 2 cut(s) 28, 927
BsnI GGCC 2 cut(s) 1123, 1272
BsoBI CYCGRG 3 cut(s) 71, 628, 1398
Bsp1286I GDGCHC 2 cut(s) 1142, 1324
Bsp13I TCCGGA 1 cut(s) 1480
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 3 cut(s) 531, 576, 714
BspANI GGCC 2 cut(s) 1123, 1272
BspCNI CTCAG 6 cut(s) 97, 520, 565, 850, 1164, 1271
BspEI TCCGGA 1 cut(s) 1480
BspFNI CGCG 1 cut(s) 888
BspHI TCATGA 2 cut(s) 504, 1528
BspLI GGNNCC 1 cut(s) 1420
BspMAI CTGCAG 1 cut(s) 844
BspMI ACCTGC 1 cut(s) 338
BspOI GCTAGC 1 cut(s) 836
BspPI GGATC 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 932
BsrGI TGTACA 1 cut(s) 289
BsrI ACTGG 3 cut(s) 638, 911, 1188
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 1 cut(s) 728
BssMI GATC 3 cut(s) 531, 576, 714
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 728
Bst4CI ACNGT 4 cut(s) 286, 982, 1051, 1411
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 366
BstAUI TGTACA 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 7 cut(s) 105, 528, 573, 858, 1172, 1258, 1310
BstF5I GGATG 2 cut(s) 594, 852
BstFNI CGCG 1 cut(s) 888
BstHHI GCGC 2 cut(s) 888, 1336
BstKTI GATC 3 cut(s) 534, 579, 717
BstMBI GATC 3 cut(s) 531, 576, 714
BstMWI GCNNNNNNNGC 8 cut(s) 197, 398, 431, 640, 848, 1229, 1340, 1582
BstSCI CCNGG 1 cut(s) 1272
BstSFI CTRYAG 1 cut(s) 840
BstUI CGCG 1 cut(s) 888
BstV1I GCAGC 6 cut(s) 204, 409, 410, 823, 826, 1030
BstX2I RGATCY 2 cut(s) 531, 576
BstYI RGATCY 2 cut(s) 531, 576
BsuI GTATCC 1 cut(s) 599
BsuRI GGCC 2 cut(s) 1123, 1272
BtsCI GGATG 2 cut(s) 594, 852
BtsIMutI CAGTG 3 cut(s) 645, 1181, 1443
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 422
CciI TCATGA 2 cut(s) 504, 1528
CfoI GCGC 2 cut(s) 888, 1336
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 1 cut(s) 1271
CseI GACGC 2 cut(s) 374, 1565
Csp6I GTAC 1 cut(s) 290
CspAI ACCGGT 1 cut(s) 932
CviAII CATG 3 cut(s) 505, 1378, 1529
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 7 cut(s) 105, 528, 573, 858, 1172, 1258, 1310
DpnI GATC 3 cut(s) 533, 578, 716
DpnII GATC 3 cut(s) 531, 576, 714
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 1322
Eco130I CCWWGG 1 cut(s) 728
Eco147I AGGCCT 1 cut(s) 1123
Eco24I GRGCYC 1 cut(s) 1324
Eco53kI GAGCTC 1 cut(s) 1322
Eco57I CTGAAG 2 cut(s) 525, 669
Eco88I CYCGRG 3 cut(s) 71, 628, 1398
EcoICRI GAGCTC 1 cut(s) 1322
EcoT14I CCWWGG 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 1324
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 3 cut(s) 508, 1381, 1532
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 3 cut(s) 504, 1377, 1528
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 6 cut(s) 218, 399, 423, 837, 840, 1044
FokI GGATG 2 cut(s) 581, 859
FriOI GRGCYC 1 cut(s) 1324
Fsp4HI GCNGC 6 cut(s) 218, 399, 423, 837, 840, 1044
FspBI CTAG 3 cut(s) 549, 590, 833
GlaI GCGC 2 cut(s) 887, 1335
GluI GCNGC 6 cut(s) 218, 399, 423, 837, 840, 1044
GsaI CCCAGC 1 cut(s) 483
GsuI CTGGAG 1 cut(s) 673
HaeIII GGCC 2 cut(s) 1123, 1272
HapII CCGG 4 cut(s) 933, 1014, 1274, 1481
HgaI GACGC 2 cut(s) 374, 1565
HhaI GCGC 2 cut(s) 888, 1336
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 3 cut(s) 508, 1381, 1532
Hin6I GCGC 2 cut(s) 886, 1334
HinP1I GCGC 2 cut(s) 886, 1334
HinfI GANTC 8 cut(s) 53, 157, 471, 675, 722, 898, 942, 1072
HpaII CCGG 4 cut(s) 933, 1014, 1274, 1481
HphI GGTGA 2 cut(s) 528, 670
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 9 cut(s) 33, 52, 61, 106, 364, 414, 897, 1173, 1297
Hpy188III TCNNGA 7 cut(s) 73, 266, 505, 572, 1398, 1481, 1529
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 921
HpyAV CCTTC 8 cut(s) 453, 549, 608, 693, 912, 1113, 1432, 1526
HpyCH4III ACNGT 4 cut(s) 286, 982, 1051, 1411
HpyF10VI GCNNNNNNNGC 8 cut(s) 197, 398, 431, 640, 848, 1229, 1340, 1582
HpyF3I CTNAG 7 cut(s) 105, 528, 573, 858, 1172, 1258, 1310
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 3 cut(s) 508, 1381, 1532
HspAI GCGC 2 cut(s) 886, 1334
Kpn2I TCCGGA 1 cut(s) 1480
Kzo9I GATC 3 cut(s) 531, 576, 714
LmnI GCTCC 3 cut(s) 75, 248, 445
Lsp1109I GCAGC 6 cut(s) 204, 409, 410, 823, 826, 1030
LweI GCATC 5 cut(s) 603, 651, 964, 1337, 1558
MaeI CTAG 3 cut(s) 549, 590, 833
MaeIII GTNAC 2 cut(s) 109, 1063
MalI GATC 3 cut(s) 533, 578, 716
MboI GATC 3 cut(s) 531, 576, 714
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 2 cut(s) 531, 576
MhlI GDGCHC 2 cut(s) 1142, 1324
MluCI AATT 9 cut(s) 208, 387, 616, 825, 891, 1017, 1212, 1266, 1404
MlyI GAGTC 3 cut(s) 47, 465, 1066
MmeI TCCRAC 3 cut(s) 979, 1019, 1243
MnlI CCTC 6 cut(s) 4, 100, 262, 648, 802, 1317
MroI TCCGGA 1 cut(s) 1480
MseI TTAA 1 cut(s) 1020
MslI CAYNNNNRTG 1 cut(s) 1473
MspI CCGG 4 cut(s) 933, 1014, 1274, 1481
MspR9I CCNGG 1 cut(s) 1274
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 2 cut(s) 28, 927
MvnI CGCG 1 cut(s) 888
MwoI GCNNNNNNNGC 8 cut(s) 197, 398, 431, 640, 848, 1229, 1340, 1582
NciI CCSGG 1 cut(s) 1274
NdeII GATC 3 cut(s) 531, 576, 714
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 3 cut(s) 508, 1381, 1532
NlaIV GGNNCC 1 cut(s) 1420
PaeR7I CTCGAG 1 cut(s) 1398
PagI TCATGA 2 cut(s) 504, 1528
PaqCI CACCTGC 1 cut(s) 338
PceI AGGCCT 1 cut(s) 1123
PctI GAATGC 2 cut(s) 28, 927
PfeI GAWTC 5 cut(s) 157, 675, 722, 898, 942
PinAI ACCGGT 1 cut(s) 932
PkrI GCNGC 6 cut(s) 219, 400, 424, 838, 841, 1045
PleI GAGTC 3 cut(s) 47, 465, 1066
PpsI GAGTC 3 cut(s) 47, 465, 1066
PsiI TTATAA 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 1324
PspFI CCCAGC 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 1420
PspPI GGNCC 1 cut(s) 1271
PstI CTGCAG 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 2 cut(s) 531, 576
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 1473
SacI GAGCTC 1 cut(s) 1324
SaqAI TTAA 1 cut(s) 1020
SatI GCNGC 6 cut(s) 218, 399, 423, 837, 840, 1044
Sau3AI GATC 3 cut(s) 531, 576, 714
Sau96I GGNCC 1 cut(s) 1271
SchI GAGTC 3 cut(s) 47, 465, 1066
ScrFI CCNGG 1 cut(s) 1274
SduI GDGCHC 2 cut(s) 1142, 1324
SfaNI GCATC 5 cut(s) 603, 651, 964, 1337, 1558
SfcI CTRYAG 1 cut(s) 840
Sfr274I CTCGAG 1 cut(s) 1398
SlaI CTCGAG 1 cut(s) 1398
SmiMI CAYNNNNRTG 1 cut(s) 1473
SmlI CTYRAG 2 cut(s) 1323, 1398
SmoI CTYRAG 2 cut(s) 1323, 1398
Sse9I AATT 9 cut(s) 208, 387, 616, 825, 891, 1017, 1212, 1266, 1404
SseBI AGGCCT 1 cut(s) 1123
SspI AATATT 1 cut(s) 1227
SspMI CTAG 3 cut(s) 549, 590, 833
SstI GAGCTC 1 cut(s) 1324
StuI AGGCCT 1 cut(s) 1123
StyD4I CCNGG 1 cut(s) 1272
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 4 cut(s) 286, 982, 1051, 1411
TaqI TCGA 6 cut(s) 376, 614, 916, 1318, 1399, 1512
TasI AATT 9 cut(s) 208, 387, 616, 825, 891, 1017, 1212, 1266, 1404
TatI WGTACW 1 cut(s) 289
TfiI GAWTC 5 cut(s) 157, 675, 722, 898, 942
Tru1I TTAA 1 cut(s) 1020
Tru9I TTAA 1 cut(s) 1020
TscAI CASTG 3 cut(s) 645, 1188, 1443
TseI GCWGC 6 cut(s) 217, 398, 422, 836, 839, 1043
TspRI CASTG 3 cut(s) 645, 1188, 1443
XapI RAATTY 2 cut(s) 825, 891
XhoI CTCGAG 1 cut(s) 1398
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 3 cut(s) 549, 590, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.