RchiOBHm_Chr7g0218421
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
36441445 .. 36443853
2409 bp
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UTR
Exon/CDS
Intron
PRQ19552

Sequence Viewer

Length: 1572 bp
ATGGGTACTGCTGAGAATGAAACGGGTTTGTCTGGGCTTCCATTGGGAACCAAGAACAAATATTCTGAGCTCACAAAGGTTGATGATGATTATGATGAAGATGCTTCACACCATCATCATCAACAAAAAAGGAGTGCAAGTACCAGGAAGTATGTCTTTGCTTGTGCCATCTTTGCCTCCCTCAACTCTGTTCTTCTTGGCTATGATGTAGGTGTGATGAGTGGGGCAATCATATTCATTCACGAAGATTTGAAGATAACCGAAGTACAGGAAGAAGTTCTTGTTGGGATTTTGAGCATTGTTTCGATTTTTGGTAGTTTAGCTGGTGGTAGAACATCAGACATTATAGGTAGAAAGTGGACAATGGCATTAGCTGCTCTTGTCTTTCAAACAGGTGCGGTTGTAATGACACTTGCTCCTTCATTTGAAGTGCTGATGATTGGAAGACTCTTGGCCGGTGTTGGGATTGGGTTTGGTGTCATGATTGCCCCGGTTTATATTGCTGAGATATCACCCACCATTGCCAGAGGCTCACTCACTTCATTTCCTGAAATTTTTATAAATCTCGGAATTTTGCTAGGCTATGTTTCAAACTATGCATTTTCTGGTCTTCCAGCACATATAAACTGGAGGATAATGCTTGCAGTAGGAATTCTGCCTTCAATTTTCATTGGTTTTGCACTTTTCATAATCCCCGAGTCCCCCAGGTGGTTGGTCATGCAGAACCGCATTGACGAGGCAAGATCAGTGCTGATGAAAACAAATGAGGATCAAAGTGAGGTGGAGGAGAGACTGAATGAAATACAAGAGGCTGCTGGAAATTCCAATGCAGACAAGTACGAGGAGAAAAGTGTGGCACGTGAACTGTTGAGTCCTTCTCCTGCACTTCGTAGGATGCTGATCACTGGTTTTGGAATTCAATGTTTTCAACAGATAACAGGAATAGATGCAACAGTGTACTACAGCCCTGAAATCTTCAGACAAGCTGGTATCGAGGATAAATCGAATCTACTTGCTGCAACTGTTGCTGTGGGCGTCACCAAGACTGCTTTCATATTGGTGGCTATTTTGCTTATTGACAAGCTTGGAAGAAAGCCCTTGCTCTATATCAGCACAATCGGAATGACAATCTGTTTATTCAGTTTGGGAATTAGTCTCTCTGTACTAGGGAAGGGACCTATAGGAATTGCATTTGCCATTTTGTCAGTTTGTGGGAACGTAGCCTTCTTCTCTGTTGGAATTGGCCCTGTTTGCTGGGTTGTAACATCCGAAATCTTTCCTCTAAGGTTGCGTGCTCAAGCATCAGCGCTTGGAGCTGTGGGTAACAGGGTCTGCAGTGGCCTAATTGCCATGTCTTTTCTCTCAGTTTCTGATGCGATTTCATTTGGCGGAACATTCTTCATCTTTTCTGCAATATCAGCTCTTTCTGTTTTGTTTGTCTACAGACTTGTCCCAGAAACTAAAGGAAAGTCATTGGAACAGATTGAGCTTCTTTTTCAGACTGATGAACTTGGATGGGAAGGAGGTCAAGTTGAACTAGGAGATGTCGAGCACCTTGTGCAAAAAGAATGA

Protein Analysis

523

Amino Acids

56.42

Weight (kDa)

5.22

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 55 - 499 1.1e-111 Sugar (and other) transporter
MFS_1 PF07690 61 - 447 1.3e-30 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccI GTMKAC 1 cut(s) 1440
AciI CCGC 3 cut(s) 398, 727, 1389
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 5 cut(s) 552, 570, 651, 820, 915
AcuI CTGAAG 1 cut(s) 961
AcvI CACGTG 1 cut(s) 860
AcyI GRCGYC 1 cut(s) 1035
AdeI CACNNNGTG 1 cut(s) 1558
AfaI GTAC 6 cut(s) 7, 142, 267, 839, 959, 1164
AfeI AGCGCT 1 cut(s) 1308
AfiI CCNNNNNNNGG 2 cut(s) 462, 708
AgsI TTSAA 8 cut(s) 253, 389, 428, 591, 663, 920, 929, 1535
AjnI CCWGG 2 cut(s) 143, 704
AjuI GAANNNNNNNTTGG 4 cut(s) 267, 299, 1034, 1066
AluBI AGCT 8 cut(s) 70, 323, 374, 986, 1084, 1316, 1421, 1489
AluI AGCT 8 cut(s) 70, 323, 374, 986, 1084, 1316, 1421, 1489
Alw21I GWGCWC 3 cut(s) 72, 1297, 1554
Alw26I GTCTC 2 cut(s) 784, 1160
AlwI GGATC 1 cut(s) 777
AlwNI CAGNNNCTG 2 cut(s) 1332, 1370
Ama87I CYCGRG 1 cut(s) 695
Aor51HI AGCGCT 1 cut(s) 1308
AoxI GGCC 3 cut(s) 453, 1243, 1339
ApeKI GCWGC 3 cut(s) 374, 812, 1016
ApoI RAATTY 5 cut(s) 552, 570, 651, 820, 915
Asp700I GAANNNNTTC 2 cut(s) 276, 1275
AspLEI GCGC 1 cut(s) 1309
AspS9I GGNCC 2 cut(s) 1175, 1244
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 504, 1030
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 1 cut(s) 1175
BanII GRGCYC 1 cut(s) 72
BbrPI CACGTG 1 cut(s) 860
BbsI GAAGAC 2 cut(s) 451, 602
Bbv12I GWGCWC 3 cut(s) 72, 1297, 1554
BbvI GCAGC 3 cut(s) 361, 799, 1003
BccI CCATC 3 cut(s) 120, 176, 1509
BciT130I CCWGG 2 cut(s) 145, 706
BclI TGATCA 1 cut(s) 900
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 2 cut(s) 784, 1160
BfaI CTAG 3 cut(s) 578, 1166, 1538
BfmI CTRYAG 4 cut(s) 961, 1179, 1333, 1441
BfoI RGCGCY 1 cut(s) 1310
BisI GCNGC 3 cut(s) 375, 813, 1017
BlsI GCNGC 3 cut(s) 376, 814, 1018
Bme1390I CCNGG 3 cut(s) 145, 491, 706
Bme18I GGWCC 1 cut(s) 1175
BmeT110I CYCGRG 1 cut(s) 695
BmgT120I GGNCC 2 cut(s) 1175, 1244
BmiI GGNNCC 2 cut(s) 49, 1176
BmrFI CCNGG 3 cut(s) 145, 491, 706
BmsI GCATC 5 cut(s) 91, 885, 937, 1310, 1363
BpiI GAAGAC 2 cut(s) 451, 602
BplI GAGNNNNNCTC 4 cut(s) 519, 551, 862, 894
BpmI CTGGAG 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 1281
BpuMI CCSGG 1 cut(s) 491
BsaAI YACGTR 1 cut(s) 860
BsaBI GATNNNNATC 1 cut(s) 899
BsaHI GRCGYC 1 cut(s) 1035
BsaJI CCNNGG 2 cut(s) 489, 704
BsaXI ACNNNNNCTCC 6 cut(s) 124, 154, 400, 430, 1515, 1545
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 708
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 2 cut(s) 632, 910
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 899
BseBI CCWGG 2 cut(s) 145, 706
BseDI CCNNGG 2 cut(s) 489, 704
BseGI GGATG 3 cut(s) 900, 1265, 1520
BseJI GATNNNNATC 1 cut(s) 899
BseLI CCNNNNNNNGG 2 cut(s) 462, 708
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 3 cut(s) 57, 495, 1377
BseNI ACTGG 2 cut(s) 632, 910
BseRI GAGGAG 2 cut(s) 800, 857
BseXI GCAGC 3 cut(s) 361, 799, 1003
BseYI CCCAGC 1 cut(s) 1254
BsgI GTGCAG 1 cut(s) 867
BshFI GGCC 3 cut(s) 455, 1245, 1341
BsiHKAI GWGCWC 3 cut(s) 72, 1297, 1554
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 2 cut(s) 456, 491
BslFI GGGAC 3 cut(s) 685, 1188, 1436
BslI CCNNNNNNNGG 2 cut(s) 462, 708
BsmAI GTCTC 2 cut(s) 784, 1160
BsmFI GGGAC 3 cut(s) 685, 1188, 1436
BsnI GGCC 3 cut(s) 455, 1245, 1341
BsoBI CYCGRG 1 cut(s) 695
Bsp1286I GDGCHC 3 cut(s) 72, 1297, 1554
Bsp143I GATC 3 cut(s) 743, 769, 900
BspACI CCGC 3 cut(s) 398, 727, 1389
BspANI GGCC 3 cut(s) 455, 1245, 1341
BspCNI CTCAG 4 cut(s) 4, 58, 496, 1376
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 2 cut(s) 49, 1176
BspMAI CTGCAG 1 cut(s) 1337
BspPI GGATC 1 cut(s) 777
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 455
BsrI ACTGG 2 cut(s) 632, 910
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 489, 704
BssMI GATC 3 cut(s) 743, 769, 900
BssNI GRCGYC 1 cut(s) 1035
Bst2UI CCWGG 2 cut(s) 145, 706
Bst4CI ACNGT 3 cut(s) 867, 955, 1024
BstACI GRCGYC 1 cut(s) 1035
BstAPI GCANNNNNTGC 3 cut(s) 374, 1025, 1558
BstBAI YACGTR 1 cut(s) 860
BstC8I GCNNGC 2 cut(s) 642, 1293
BstDEI CTNAG 5 cut(s) 12, 66, 504, 1283, 1363
BstF5I GGATG 3 cut(s) 900, 1265, 1520
BstH2I RGCGCY 1 cut(s) 1310
BstHHI GCGC 1 cut(s) 1309
BstKTI GATC 3 cut(s) 746, 772, 903
BstMAI GTCTC 2 cut(s) 784, 1160
BstMBI GATC 3 cut(s) 743, 769, 900
BstMWI GCNNNNNNNGC 7 cut(s) 173, 374, 1025, 1251, 1313, 1418, 1558
BstNI CCWGG 2 cut(s) 145, 706
BstSCI CCNGG 3 cut(s) 143, 489, 704
BstSFI CTRYAG 4 cut(s) 961, 1179, 1333, 1441
BstV1I GCAGC 3 cut(s) 361, 799, 1003
BstV2I GAAGAC 2 cut(s) 451, 602
BstXI CCANNNNNNTGG 1 cut(s) 712
BsuRI GGCC 3 cut(s) 455, 1245, 1341
BtsCI GGATG 3 cut(s) 900, 1265, 1520
BtsI GCAGTG 1 cut(s) 1342
BtsIMutI CAGTG 4 cut(s) 753, 903, 960, 1342
Cac8I GCNNGC 2 cut(s) 642, 1293
CaiI CAGNNNCTG 2 cut(s) 1332, 1370
CciI TCATGA 1 cut(s) 480
CfoI GCGC 1 cut(s) 1309
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 2 cut(s) 1175, 1244
CseI GACGC 1 cut(s) 1024
Csp6I GTAC 6 cut(s) 6, 141, 266, 838, 958, 1163
CviAII CATG 3 cut(s) 481, 718, 1351
CviQI GTAC 6 cut(s) 6, 141, 266, 838, 958, 1163
DdeI CTNAG 5 cut(s) 12, 66, 504, 1283, 1363
DpnI GATC 3 cut(s) 745, 771, 902
DpnII GATC 3 cut(s) 743, 769, 900
DraIII CACNNNGTG 1 cut(s) 1558
EaeI YGGCCR 1 cut(s) 453
EciI GGCGGA 1 cut(s) 1404
Ecl136II GAGCTC 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 1175
Eco47III AGCGCT 1 cut(s) 1308
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 961
Eco72I CACGTG 1 cut(s) 860
Eco88I CYCGRG 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 1175
EcoRI GAATTC 2 cut(s) 651, 915
EcoRII CCWGG 2 cut(s) 143, 704
EcoRV GATATC 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 72
FaeI CATG 3 cut(s) 484, 721, 1354
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 264, 296
FaqI GGGAC 3 cut(s) 685, 1188, 1436
FatI CATG 3 cut(s) 480, 717, 1350
FbaI TGATCA 1 cut(s) 900
FblI GTMKAC 1 cut(s) 1440
Fnu4HI GCNGC 3 cut(s) 375, 813, 1017
FokI GGATG 3 cut(s) 907, 1252, 1527
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 3 cut(s) 375, 813, 1017
FspBI CTAG 3 cut(s) 578, 1166, 1538
GlaI GCGC 1 cut(s) 1308
GluI GCNGC 3 cut(s) 375, 813, 1017
GsaI CCCAGC 1 cut(s) 1258
GsuI CTGGAG 1 cut(s) 649
HaeII RGCGCY 1 cut(s) 1310
HaeIII GGCC 3 cut(s) 455, 1245, 1341
HapII CCGG 2 cut(s) 456, 491
HgaI GACGC 1 cut(s) 1024
HhaI GCGC 1 cut(s) 1309
Hin1I GRCGYC 1 cut(s) 1035
Hin1II CATG 3 cut(s) 484, 721, 1354
Hin6I GCGC 1 cut(s) 1307
HinP1I GCGC 1 cut(s) 1307
HindIII AAGCTT 1 cut(s) 1082
HinfI GANTC 4 cut(s) 447, 698, 871, 1006
HpaII CCGG 2 cut(s) 456, 491
HphI GGTGA 2 cut(s) 504, 1030
Hpy166II GTNNAC 4 cut(s) 360, 863, 958, 1441
Hpy188I TCNGA 8 cut(s) 67, 340, 569, 980, 1121, 1270, 1372, 1500
Hpy188III TCNNGA 3 cut(s) 242, 481, 548
Hpy8I GTNNAC 4 cut(s) 360, 863, 958, 1441
HpyAV CCTTC 6 cut(s) 429, 669, 885, 1165, 1234, 1514
HpyCH4III ACNGT 3 cut(s) 867, 955, 1024
HpyCH4IV ACGT 2 cut(s) 859, 1218
HpyF10VI GCNNNNNNNGC 7 cut(s) 173, 374, 1025, 1251, 1313, 1418, 1558
HpyF3I CTNAG 5 cut(s) 12, 66, 504, 1283, 1363
HpySE526I ACGT 2 cut(s) 859, 1218
Hsp92I GRCGYC 1 cut(s) 1035
Hsp92II CATG 3 cut(s) 484, 721, 1354
HspAI GCGC 1 cut(s) 1307
Ksp22I TGATCA 1 cut(s) 900
Kzo9I GATC 3 cut(s) 743, 769, 900
LmnI GCTCC 2 cut(s) 421, 1313
Lsp1109I GCAGC 3 cut(s) 361, 799, 1003
LweI GCATC 5 cut(s) 91, 885, 937, 1310, 1363
MaeI CTAG 3 cut(s) 578, 1166, 1538
MaeII ACGT 2 cut(s) 859, 1218
MaeIII GTNAC 3 cut(s) 1036, 1261, 1322
MalI GATC 3 cut(s) 745, 771, 902
MboI GATC 3 cut(s) 743, 769, 900
MhlI GDGCHC 3 cut(s) 72, 1297, 1554
MlyI GAGTC 3 cut(s) 441, 707, 880
MmeI TCCRAC 1 cut(s) 1216
Mph1103I ATGCAT 1 cut(s) 601
MroXI GAANNNNTTC 2 cut(s) 276, 1275
MslI CAYNNNNRTG 1 cut(s) 1058
MspI CCGG 2 cut(s) 456, 491
MspR9I CCNGG 3 cut(s) 145, 491, 706
MvaI CCWGG 2 cut(s) 145, 706
MwoI GCNNNNNNNGC 7 cut(s) 173, 374, 1025, 1251, 1313, 1418, 1558
NciI CCSGG 1 cut(s) 491
NdeII GATC 3 cut(s) 743, 769, 900
NlaIII CATG 3 cut(s) 484, 721, 1354
NlaIV GGNNCC 2 cut(s) 49, 1176
NmuCI GTSAC 1 cut(s) 1036
NsiI ATGCAT 1 cut(s) 601
PagI TCATGA 1 cut(s) 480
PdmI GAANNNNTTC 2 cut(s) 276, 1275
PfeI GAWTC 1 cut(s) 1006
PkrI GCNGC 3 cut(s) 376, 814, 1018
PleI GAGTC 3 cut(s) 441, 706, 879
PmaCI CACGTG 1 cut(s) 860
PmlI CACGTG 1 cut(s) 860
PpsI GAGTC 3 cut(s) 441, 706, 879
Ppu21I YACGTR 1 cut(s) 860
PpuMI RGGWCCY 1 cut(s) 1175
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 1175
Psp6I CCWGG 2 cut(s) 143, 704
PspCI CACGTG 1 cut(s) 860
PspFI CCCAGC 1 cut(s) 1254
PspGI CCWGG 2 cut(s) 143, 704
PspN4I GGNNCC 2 cut(s) 49, 1176
PspPI GGNCC 2 cut(s) 1175, 1244
PspPPI RGGWCCY 1 cut(s) 1175
PstI CTGCAG 1 cut(s) 1337
PstNI CAGNNNCTG 2 cut(s) 1332, 1370
RsaI GTAC 6 cut(s) 7, 142, 267, 839, 959, 1164
RsaNI GTAC 6 cut(s) 6, 141, 266, 838, 958, 1163
RseI CAYNNNNRTG 1 cut(s) 1058
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 3 cut(s) 375, 813, 1017
Sau3AI GATC 3 cut(s) 743, 769, 900
Sau96I GGNCC 2 cut(s) 1175, 1244
SchI GAGTC 3 cut(s) 441, 707, 880
ScrFI CCNGG 3 cut(s) 145, 491, 706
SduI GDGCHC 3 cut(s) 72, 1297, 1554
SfaNI GCATC 5 cut(s) 91, 885, 937, 1310, 1363
SfcI CTRYAG 4 cut(s) 961, 1179, 1333, 1441
SinI GGWCC 1 cut(s) 1175
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 1 cut(s) 1296
SmoI CTYRAG 1 cut(s) 1296
SsiI CCGC 3 cut(s) 398, 727, 1389
SspI AATATT 1 cut(s) 62
SspMI CTAG 3 cut(s) 578, 1166, 1538
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 143, 489, 704
TaaI ACNGT 3 cut(s) 867, 955, 1024
TaiI ACGT 2 cut(s) 862, 1221
TaqI TCGA 4 cut(s) 305, 993, 1004, 1548
TatI WGTACW 3 cut(s) 265, 957, 1162
TfiI GAWTC 1 cut(s) 1006
TscAI CASTG 4 cut(s) 753, 910, 960, 1342
TseFI GTSAC 1 cut(s) 1036
TseI GCWGC 3 cut(s) 374, 812, 1016
Tsp45I GTSAC 1 cut(s) 1036
TspRI CASTG 4 cut(s) 753, 910, 960, 1342
VpaK11BI GGWCC 1 cut(s) 1175
XapI RAATTY 5 cut(s) 552, 570, 651, 820, 915
XmiI GTMKAC 1 cut(s) 1440
XmnI GAANNNNTTC 2 cut(s) 276, 1275
XspI CTAG 3 cut(s) 578, 1166, 1538
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.