FvH4_5g27230
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
18513378 .. 18516095
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27230.t1

Sequence Viewer

Length: 1581 bp
ATGATGATGGGTAGTGATGAGAATGAAACGGGTTTGTCAGGGGTTCCATTGGGAATCAAGAACAAGTACTCTGAGCTCACAAAAGTAGATTTTGATGATGATGATGATGATGCTTCGCACCATCATCATCAACGAAAGAGGAGTGCAAGTACCAGGAAGTATGTCCTTGCTTGTGCCATCTTCGCCTCCCTCAACTCTGTTCTTCTTGGCTATGATGTAGGTGTGATGAGTGGGGCAATCATATTCATTCAAGAAGATCTGAAGATAACCGAGGTACAGGAAGAAGTTCTTGTTGGGATTTTGAGCGTTGTTTCGATTTTTGGTAGTTTGGCTGGTGGTAGAACATCAGATATTATAGGTAGAAAGTGGACAATGGCATTAGCTGCTCTTGTCTTTCAAGCAGGTGCAGCTGTAATGACACTTGCTCCTTCATTTGAAGTGCTCATGATTGGAAGACTCTTGGCCGGCGTTGGGATCGGGTTTGGTGTCATGATTGCCCCGGTTTATATTGCTGAGATATCACCCACCATTGCCAGAGGCTCCCTCACTTCATTTCCTGAAATTTTTATAAATCTCGGAATTTTGCTTGGCTATGTTTCAAACTATGCATTTTCTGGTCTTCCAGCACATATAAACTGGAGGATAATGCTTGCAGTAGGAATTCTGCCTTCACTTTTCATTGGTTTTGCACTTTTCATAATCCCAGAGTCTCCCAGATGGTTGGTTATGCAAAACCGCATTGATGAGGCAAGATCAGTGCTGATGAAAACAAATGAGAATGAAAGTGAGGTGGAGGAGAGACTAAATGAAATACAAGAGGCTGCTGGAAATTCCAATGCAGACAAGTATGAGGAGAAAAGTGTGGCACGTGAGCTGTTGAGTCCTTCTCCTGCCCTTCGTCGGATGCTGATCACTGGTTTTGGAATTCAATGTTTTCAGCAGATAACAGGAATAGATGCAACAGTGTACTACAGCCCAGAAATCTTCAGACAAGCTGGTATTGTGGATAAATCGAATCTACTTGCTGCAACTATTGCTGTGGGTGTCACCAAGACTGCTTTCATAATGGTGGCTATTTTGCTTATTGACAAGCTTGGAAGAAAGCCCTTACTCTATATCAGCACTATCGGAATGACAATCTGTTTATTCAGTTTGGGTGTTACTCTCTCAGTACTAGGGAAAGGACCTATTGGGATTCTATTTGCCATTTTGTCAGTTTGTGGGAATGTAGCCTTCTTCTCTGTTGGAATTGGCCCTGTTTGCTGGGTTGTGACATCTGAAATCTTTCCTTTAAGGTTGCGTGCTCAAGCATCAGCTCTTGGAGCTGTGGGTAACAGGGTCTGCAGTGGCCTAATTGCCATGTCTTTTCTGTCAGTTTCTGATGCAATCTCATTTGGCGGATCATTCTTCACCTTTTCTGCAATTTCGGCTCTTTCTGTTTTGTTTGTCTTCAAACTTGTCCCAGAAACCAAAGGAAAGTCATTGGAACAGATTGAGCTTCTTTTTCAGACTGATGATCTTGGCTGGAAAGGAGGTCAAGTTGCACTAGGAGATGTCGAGCACCTTGTGCAAAAAGAATGA

Protein Analysis

527

Amino Acids

56.61

Weight (kDa)

5.37

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 58 - 502 2.2e-111 Sugar (and other) transporter
MFS_1 PF07690 64 - 450 4.3e-30 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AarI CACCTGC 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 392
AciI CCGC 2 cut(s) 736, 1398
AclWI GGATC 2 cut(s) 482, 1408
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 5 cut(s) 561, 579, 660, 829, 924
AcuI CTGAAG 2 cut(s) 281, 970
AcvI CACGTG 1 cut(s) 869
AdeI CACNNNGTG 1 cut(s) 1567
AfaI GTAC 5 cut(s) 68, 151, 276, 968, 1173
AfiI CCNNNNNNNGG 2 cut(s) 471, 900
AgsI TTSAA 6 cut(s) 251, 398, 437, 600, 929, 1453
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 308, 1043, 1075
AluBI AGCT 9 cut(s) 76, 383, 410, 874, 995, 1093, 1316, 1325, 1498
AluI AGCT 9 cut(s) 76, 383, 410, 874, 995, 1093, 1316, 1325, 1498
Alw21I GWGCWC 4 cut(s) 78, 444, 1306, 1563
Alw26I GTCTC 2 cut(s) 714, 793
AlwI GGATC 2 cut(s) 482, 1408
AlwNI CAGNNNCTG 2 cut(s) 1341, 1379
AoxI GGCC 3 cut(s) 462, 1252, 1348
ApeKI GCWGC 4 cut(s) 383, 407, 821, 1025
ApoI RAATTY 5 cut(s) 561, 579, 660, 829, 924
Asp700I GAANNNNTTC 2 cut(s) 285, 1284
AspS9I GGNCC 2 cut(s) 1184, 1253
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 513, 1039, 1402
AvaII GGWCC 1 cut(s) 1184
BanII GRGCYC 1 cut(s) 78
BbrPI CACGTG 1 cut(s) 869
BbsI GAAGAC 3 cut(s) 460, 611, 1441
Bbv12I GWGCWC 4 cut(s) 78, 444, 1306, 1563
BbvI GCAGC 4 cut(s) 370, 419, 808, 1012
BccI CCATC 3 cut(s) 129, 185, 711
BciT130I CCWGG 1 cut(s) 154
BclI TGATCA 1 cut(s) 909
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 714, 793
BfaI CTAG 2 cut(s) 1175, 1547
BfmI CTRYAG 2 cut(s) 970, 1342
BfuAI ACCTGC 1 cut(s) 392
BglII AGATCT 1 cut(s) 256
BisI GCNGC 4 cut(s) 384, 408, 822, 1026
BlsI GCNGC 4 cut(s) 385, 409, 823, 1027
BmcAI AGTACT 2 cut(s) 68, 1173
Bme1390I CCNGG 2 cut(s) 154, 500
Bme18I GGWCC 1 cut(s) 1184
BmgT120I GGNCC 2 cut(s) 1184, 1253
BmiI GGNNCC 2 cut(s) 45, 541
BmrFI CCNGG 2 cut(s) 154, 500
BmsI GCATC 5 cut(s) 100, 894, 946, 1319, 1372
BpiI GAAGAC 3 cut(s) 460, 611, 1441
BplI GAGNNNNNCTC 4 cut(s) 528, 560, 871, 903
BpmI CTGGAG 1 cut(s) 658
BpuEI CTTGAG 1 cut(s) 1290
BpuMI CCSGG 1 cut(s) 500
BsaAI YACGTR 1 cut(s) 869
BsaBI GATNNNNATC 1 cut(s) 908
BsaJI CCNNGG 2 cut(s) 270, 498
BsaXI ACNNNNNCTCC 6 cut(s) 133, 163, 409, 439, 1524, 1554
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 900
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 641, 919
Bse3DI GCAATG 1 cut(s) 528
Bse8I GATNNNNATC 1 cut(s) 908
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 270, 498
BseGI GGATG 1 cut(s) 909
BseJI GATNNNNATC 1 cut(s) 908
BseLI CCNNNNNNNGG 2 cut(s) 471, 900
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 3 cut(s) 63, 504, 1182
BseNI ACTGG 2 cut(s) 641, 919
BseRI GAGGAG 3 cut(s) 154, 809, 866
BseXI GCAGC 4 cut(s) 370, 419, 808, 1012
BseYI CCCAGC 1 cut(s) 1263
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 3 cut(s) 464, 1254, 1350
BsiHKAI GWGCWC 4 cut(s) 78, 444, 1306, 1563
BsiSI CCGG 2 cut(s) 465, 500
BslFI GGGAC 1 cut(s) 1445
BslI CCNNNNNNNGG 2 cut(s) 471, 900
BsmAI GTCTC 2 cut(s) 714, 793
BsmFI GGGAC 1 cut(s) 1445
BsnI GGCC 3 cut(s) 464, 1254, 1350
Bsp1286I GDGCHC 4 cut(s) 78, 444, 1306, 1563
Bsp143I GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
BspACI CCGC 2 cut(s) 736, 1398
BspANI GGCC 3 cut(s) 464, 1254, 1350
BspCNI CTCAG 3 cut(s) 64, 505, 1181
BspHI TCATGA 2 cut(s) 444, 489
BspLI GGNNCC 2 cut(s) 45, 541
BspMAI CTGCAG 1 cut(s) 1346
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 2 cut(s) 482, 1408
BsrDI GCAATG 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 2 cut(s) 641, 919
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 2 cut(s) 270, 498
BssMI GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 964
BstAPI GCANNNNNTGC 3 cut(s) 383, 1034, 1567
BstBAI YACGTR 1 cut(s) 869
BstC8I GCNNGC 3 cut(s) 466, 651, 1302
BstDEI CTNAG 3 cut(s) 72, 513, 1168
BstF5I GGATG 1 cut(s) 909
BstKTI GATC 6 cut(s) 259, 477, 755, 912, 1403, 1519
BstMAI GTCTC 2 cut(s) 714, 793
BstMBI GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
BstMWI GCNNNNNNNGC 8 cut(s) 182, 383, 407, 1034, 1260, 1322, 1427, 1567
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 152, 498
BstSFI CTRYAG 2 cut(s) 970, 1342
BstV1I GCAGC 4 cut(s) 370, 419, 808, 1012
BstV2I GAAGAC 3 cut(s) 460, 611, 1441
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 721
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 3 cut(s) 464, 1254, 1350
BtsCI GGATG 1 cut(s) 909
BtsI GCAGTG 1 cut(s) 1351
BtsIMutI CAGTG 4 cut(s) 762, 912, 969, 1351
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 3 cut(s) 466, 651, 1302
CaiI CAGNNNCTG 2 cut(s) 1341, 1379
CciI TCATGA 2 cut(s) 444, 489
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 2 cut(s) 1184, 1253
Csp6I GTAC 5 cut(s) 67, 150, 275, 967, 1172
CviAII CATG 3 cut(s) 445, 490, 1360
CviQI GTAC 5 cut(s) 67, 150, 275, 967, 1172
DdeI CTNAG 3 cut(s) 72, 513, 1168
DpnI GATC 6 cut(s) 258, 476, 754, 911, 1402, 1518
DpnII GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
DraIII CACNNNGTG 1 cut(s) 1567
EaeI YGGCCR 1 cut(s) 462
EciI GGCGGA 1 cut(s) 1413
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 1184
Eco53kI GAGCTC 1 cut(s) 76
Eco57I CTGAAG 2 cut(s) 281, 970
Eco72I CACGTG 1 cut(s) 869
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 1184
EcoRI GAATTC 2 cut(s) 660, 924
EcoRII CCWGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 519
EcoT22I ATGCAT 1 cut(s) 610
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 3 cut(s) 448, 493, 1363
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 1445
FatI CATG 3 cut(s) 444, 489, 1359
FbaI TGATCA 1 cut(s) 909
Fnu4HI GCNGC 4 cut(s) 384, 408, 822, 1026
FokI GGATG 1 cut(s) 916
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 384, 408, 822, 1026
FspBI CTAG 2 cut(s) 1175, 1547
GluI GCNGC 4 cut(s) 384, 408, 822, 1026
GsaI CCCAGC 1 cut(s) 1267
GsuI CTGGAG 1 cut(s) 658
HaeIII GGCC 3 cut(s) 464, 1254, 1350
HapII CCGG 2 cut(s) 465, 500
Hin1II CATG 3 cut(s) 448, 493, 1363
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 6 cut(s) 54, 456, 707, 880, 1015, 1195
HpaII CCGG 2 cut(s) 465, 500
HphI GGTGA 3 cut(s) 513, 1039, 1402
Hpy166II GTNNAC 2 cut(s) 369, 967
Hpy188III TCNNGA 5 cut(s) 58, 251, 445, 490, 557
Hpy8I GTNNAC 2 cut(s) 369, 967
Hpy99I CGWCG 1 cut(s) 903
HpyAV CCTTC 5 cut(s) 438, 678, 894, 905, 1243
HpyCH4III ACNGT 1 cut(s) 964
HpyCH4IV ACGT 1 cut(s) 868
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 383, 407, 1034, 1260, 1322, 1427, 1567
HpyF3I CTNAG 3 cut(s) 72, 513, 1168
HpySE526I ACGT 1 cut(s) 868
Hsp92II CATG 3 cut(s) 448, 493, 1363
KroI GCCGGC 1 cut(s) 464
KroNI GCCGGC 1 cut(s) 466
Ksp22I TGATCA 1 cut(s) 909
Kzo9I GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
LmnI GCTCC 3 cut(s) 430, 545, 1322
Lsp1109I GCAGC 4 cut(s) 370, 419, 808, 1012
LweI GCATC 5 cut(s) 100, 894, 946, 1319, 1372
MaeI CTAG 2 cut(s) 1175, 1547
MaeII ACGT 1 cut(s) 868
MaeIII GTNAC 4 cut(s) 1045, 1159, 1270, 1331
MalI GATC 6 cut(s) 258, 476, 754, 911, 1402, 1518
MboI GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 4 cut(s) 78, 444, 1306, 1563
MluCI AATT 8 cut(s) 561, 579, 660, 829, 924, 1248, 1353, 1422
MlyI GAGTC 3 cut(s) 450, 716, 889
MmeI TCCRAC 2 cut(s) 881, 1225
Mph1103I ATGCAT 1 cut(s) 610
MroNI GCCGGC 1 cut(s) 464
MroXI GAANNNNTTC 2 cut(s) 285, 1284
MseI TTAA 1 cut(s) 1292
MslI CAYNNNNRTG 1 cut(s) 1067
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 465, 500
MspR9I CCNGG 2 cut(s) 154, 500
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 8 cut(s) 182, 383, 407, 1034, 1260, 1322, 1427, 1567
NaeI GCCGGC 1 cut(s) 466
NciI CCSGG 1 cut(s) 500
NdeII GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
NgoMIV GCCGGC 1 cut(s) 464
NlaIII CATG 3 cut(s) 448, 493, 1363
NlaIV GGNNCC 2 cut(s) 45, 541
NmuCI GTSAC 2 cut(s) 1045, 1270
NsiI ATGCAT 1 cut(s) 610
PagI TCATGA 2 cut(s) 444, 489
PaqCI CACCTGC 1 cut(s) 392
PdiI GCCGGC 1 cut(s) 466
PdmI GAANNNNTTC 2 cut(s) 285, 1284
PfeI GAWTC 3 cut(s) 54, 1015, 1195
PkrI GCNGC 4 cut(s) 385, 409, 823, 1027
PleI GAGTC 3 cut(s) 450, 715, 888
PmaCI CACGTG 1 cut(s) 869
PmlI CACGTG 1 cut(s) 869
PpsI GAGTC 3 cut(s) 450, 715, 888
Ppu21I YACGTR 1 cut(s) 869
PpuMI RGGWCCY 1 cut(s) 1184
PsiI TTATAA 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 1184
Psp6I CCWGG 1 cut(s) 152
PspCI CACGTG 1 cut(s) 869
PspFI CCCAGC 1 cut(s) 1263
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 45, 541
PspPI GGNCC 2 cut(s) 1184, 1253
PspPPI RGGWCCY 1 cut(s) 1184
PstI CTGCAG 1 cut(s) 1346
PstNI CAGNNNCTG 2 cut(s) 1341, 1379
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 5 cut(s) 68, 151, 276, 968, 1173
RsaNI GTAC 5 cut(s) 67, 150, 275, 967, 1172
RseI CAYNNNNRTG 1 cut(s) 1067
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 1292
SatI GCNGC 4 cut(s) 384, 408, 822, 1026
Sau3AI GATC 6 cut(s) 256, 474, 752, 909, 1400, 1516
Sau96I GGNCC 2 cut(s) 1184, 1253
ScaI AGTACT 2 cut(s) 68, 1173
SchI GAGTC 3 cut(s) 450, 716, 889
ScrFI CCNGG 2 cut(s) 154, 500
SduI GDGCHC 4 cut(s) 78, 444, 1306, 1563
SfaNI GCATC 5 cut(s) 100, 894, 946, 1319, 1372
SfcI CTRYAG 2 cut(s) 970, 1342
SinI GGWCC 1 cut(s) 1184
SmiMI CAYNNNNRTG 1 cut(s) 1067
SmlI CTYRAG 1 cut(s) 1305
SmoI CTYRAG 1 cut(s) 1305
Sse9I AATT 8 cut(s) 561, 579, 660, 829, 924, 1248, 1353, 1422
SsiI CCGC 2 cut(s) 736, 1398
SspMI CTAG 2 cut(s) 1175, 1547
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 152, 498
TaaI ACNGT 1 cut(s) 964
TaiI ACGT 1 cut(s) 871
TaqI TCGA 3 cut(s) 314, 1013, 1557
TasI AATT 8 cut(s) 561, 579, 660, 829, 924, 1248, 1353, 1422
TatI WGTACW 3 cut(s) 66, 966, 1171
TfiI GAWTC 3 cut(s) 54, 1015, 1195
Tru1I TTAA 1 cut(s) 1292
Tru9I TTAA 1 cut(s) 1292
TscAI CASTG 4 cut(s) 762, 919, 969, 1351
TseFI GTSAC 2 cut(s) 1045, 1270
TseI GCWGC 4 cut(s) 383, 407, 821, 1025
Tsp45I GTSAC 2 cut(s) 1045, 1270
TspRI CASTG 4 cut(s) 762, 919, 969, 1351
VpaK11BI GGWCC 1 cut(s) 1184
XapI RAATTY 5 cut(s) 561, 579, 660, 829, 924
XmnI GAANNNNTTC 2 cut(s) 285, 1284
XspI CTAG 2 cut(s) 1175, 1547
ZrmI AGTACT 2 cut(s) 68, 1173
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.