Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003562

Physical Location & Seq

Genomic Coordinates Forward (+)

4515590 .. 4518732

Gene Structure 3143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG055400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGGTGTTGAGGAAAACAGGAATGCTGGTCAGAATGGAGTGTTTGGGTCTGACTCGTCCGAGTTTCAACTCGGGAGCAAGAACAAATACAAGAGAATGAAGTCTGAGGTAACAGAAGAAGAAGAAGAACAAGATGGTTCATTCACAAAGGAGAATCGTGGAACAAAGAAATATGTGTTTGCTTGTGCCATCTTTGCTTCTCTCAATTCTGTGCTGCTTGGATATGATGTGGGTGTTATGAGTGGAGCTATTATCTTCATTCAGGAGGATTTGAAAATCACAGTTGTACAACAAGAACTTCTTGTTGGGATTTTGAGCATAATCTCCCTATTGGGTAGTTTAGCAGGTGGGAAAACATCAGATGCCATTGGTCGAAAATGGACAATTGCATTTGCAGCCTTTATCTTTCAGACAGGTGCTGCTGTAATGGCACTTGCTCCTTCTTATGAAGTATTGATGATTGGTAGACTCTTTGCTGGGATTGGTATAGGATTTGGGGTCATGATTGCACCTGTATATATTGCTGAGATCTCACCTTCAGTAGCTAGGGGTTCGCTTACTTCATTTCCTGAGATCTTTATAAATCTAGGCATCCTTCTTGGATACATATCGAATTATGCTTTCTCGGGGCTTCCGGTGCATATAAGCTGGAGGGTGATGCTTGGTGTGGGAATCATACCTTCAGTCTTTCTTGGATTTGCTCTTTTTGTGATCCCCGAATCCCCAAGGTGGTTAGTTATGCAGAACAGGATTGAAGAAGCGAGAATAGTATTGACCAAGACGAATGAGAGTGAAAAAGAAGTTGAGGAGAGATTGGCAGAAATTCAGCTAGCTGCTGCAGGGATGGCTAATGCTGAGAATAATGAAGCAAAAGCTATATGGCGCGAAATTCTGAATCCTTCTCCCCCAGTTCGACGAATGCTGATTACCGGTTGTGGAATCCAATGTTTCCAACAGATTACAGGCATTGATGCAACTGTGTATTATAGTCCAACCATTTTCAAAAATGCCGGAATTAAAGGCAACACTCAACTTCTTGCTGCAACTGTTATTGTTGGGGTTACAAAGACTGTGTTCATCTTGGTAGCTATCTTTCTTATTGACAAAGTGGGCAGAAAGCCTTTGCTTTATGTGAGCACTATTGGAATGACTACTTGCTTACTTGGTCTGAGCCTTGCACTGGCTTTTCTTGGAAATGGAAAACTTGGAATTGGATTGGCAATATTAGCCGTTTGTGGAAATGTAGCTTTCTTCTCAGTTGGAATTGGCCCGGTTTGTTGGGTCTTGTCATCTGAAATCTTCCCTCTAAGGCTTCGAGCTCAAGCATCTGCGCTTGGGGCAGTTGGTAGTAGGGTTAGTAGTGGTGTGATTACCATGTCATTTCTCTCGGTATCTCGAGCAATTACAGTAGCAGGAACCTTCTTTGTTTTTTCAGTGATTTCAGCACTCTCGGTTGTTTTTGTTCATACATGTGTTCCGGAAACAAAAGGGAAGTCTTTAGAAGAAATCGAAATGATTTTCCATAATGAAGGGGAGTGGCAAGGAAGTGAAGTAGAAATGGGAGATGCACAGCGTCTAATGCAAAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

530

Amino Acids

57.0

Weight (kDa)

5.9

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	62 - 507	2.9e-111	Sugar (and other) transporter
MFS_1	PF07690	68 - 456	4.9e-33	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20780 AT2G20780
fragaria_vesca	FvH4_3g04750 FvH4_3g04750 FvH4_3g04750 FvH4_5g27230
malus_domestica	MD05G1318100.v1.1 MD10G1297500.v1.1 MD17G1244000.v1.1
prunus_persica	Prupe.3G156900_v2.0.a1 Prupe.4G042700_v2.0.a1 Prupe.4G042700_v2.0.a1
pyrus_communis	pycom05g29450 pycom09g16810 pycom10g25100 pycom17g24690
rosa_chinensis	RchiOBHm_Chr5g0007771 RchiOBHm_Chr7g0218421
rosa_laevigata	RLG00000002377 RLG00000031487
rosa_multiflora	Rmu_co8512857.1_g000002
rosa_roxburghii	Rroxscaffold_1G00068640 Rroxscaffold_3G00241020
rosa_rugosa	Rorug04G0430200 Rorug07G0177000
rosa_samantha	Rh5AG058700 Rh5BG055400 Rh5CG065200 Rh5DG054400 Rh7AG318200 Rh7BG310100 Rh7CG335000 Rh7DG317300
rosa_wichuraiana	Rw5G006110 Rw7G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	581
AarI	CACCTGC	1 cut(s)	335
Acc36I	ACCTGC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	466
AccII	CGCG	1 cut(s)	885
AccIII	TCCGGA	1 cut(s)	1477
AclWI	GGATC	1 cut(s)	706
AcsI	RAATTY	2 cut(s)	822, 888
AcuI	CTGAAG	2 cut(s)	522, 666
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	729, 1180
AflIII	ACRYGT	1 cut(s)	1469
AgeI	ACCGGT	1 cut(s)	929
AgsI	TTSAA	4 cut(s)	68, 274, 755, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	9 cut(s)	248, 545, 648, 829, 833, 875, 1088, 1247, 1319
AluI	AGCT	9 cut(s)	248, 545, 648, 829, 833, 875, 1088, 1247, 1319
Alw21I	GWGCWC	2 cut(s)	1139, 1321
AlwI	GGATC	1 cut(s)	706
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	3 cut(s)	71, 625, 1395
Aor13HI	TCCGGA	1 cut(s)	1477
AoxI	GGCC	1 cut(s)	1267
ApeKI	GCWGC	6 cut(s)	214, 395, 419, 833, 836, 1040
ApoI	RAATTY	2 cut(s)	822, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	1478, 1510
AsiGI	ACCGGT	1 cut(s)	929
AspLEI	GCGC	2 cut(s)	885, 1333
AspS9I	GGNCC	1 cut(s)	1268
AsuC2I	CCSGG	1 cut(s)	1271
AsuHPI	GGTGA	2 cut(s)	525, 667
AsuNHI	GCTAGC	1 cut(s)	829
AvaI	CYCGRG	3 cut(s)	71, 625, 1395
BanII	GRGCYC	1 cut(s)	1321
Bbv12I	GWGCWC	2 cut(s)	1139, 1321
BbvI	GCAGC	6 cut(s)	201, 406, 407, 820, 823, 1027
BccI	CCATC	3 cut(s)	128, 197, 838
BceAI	ACGGC	1 cut(s)	1214
BciVI	GTATCC	1 cut(s)	596
BcnI	CCSGG	1 cut(s)	1271
BfaI	CTAG	3 cut(s)	546, 587, 830
BfmI	CTRYAG	1 cut(s)	837
BfuAI	ACCTGC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	596
BglII	AGATCT	2 cut(s)	528, 573
BisI	GCNGC	6 cut(s)	215, 396, 420, 834, 837, 1041
BlsI	GCNGC	6 cut(s)	216, 397, 421, 835, 838, 1042
Bme1390I	CCNGG	1 cut(s)	1271
BmeT110I	CYCGRG	3 cut(s)	71, 625, 1395
BmgT120I	GGNCC	1 cut(s)	1268
BmiI	GGNNCC	1 cut(s)	1417
BmrFI	CCNGG	1 cut(s)	1271
BmrI	ACTGGG	1 cut(s)	902
BmsI	GCATC	6 cut(s)	352, 600, 648, 961, 1334, 1555
BmtI	GCTAGC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	902
BpmI	CTGGAG	1 cut(s)	670
BpuEI	CTTGAG	1 cut(s)	1305
BpuMI	CCSGG	1 cut(s)	1271
BsaBI	GATNNNNATC	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	725
BsaWI	WCCGGW	3 cut(s)	634, 929, 1477
Bsc4I	CCNNNNNNNGG	2 cut(s)	729, 1180
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	2 cut(s)	908, 1185
Bse8I	GATNNNNATC	1 cut(s)	607
BseAI	TCCGGA	1 cut(s)	1477
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	2 cut(s)	591, 849
BseJI	GATNNNNATC	1 cut(s)	607
BseLI	CCNNNNNNNGG	2 cut(s)	729, 1180
BseMII	CTCAG	6 cut(s)	96, 516, 561, 846, 1160, 1269
BseNI	ACTGG	2 cut(s)	908, 1185
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	6 cut(s)	201, 406, 407, 820, 823, 1027
BseYI	CCCAGC	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	1 cut(s)	1269
BshTI	ACCGGT	1 cut(s)	929
BsiHKAI	GWGCWC	2 cut(s)	1139, 1321
BsiHKCI	CYCGRG	3 cut(s)	71, 625, 1395
BsiSI	CCGG	5 cut(s)	635, 930, 1011, 1271, 1478
BslI	CCNNNNNNNGG	2 cut(s)	729, 1180
BsmI	GAATGC	2 cut(s)	28, 924
BsnI	GGCC	1 cut(s)	1269
BsoBI	CYCGRG	3 cut(s)	71, 625, 1395
Bsp1286I	GDGCHC	2 cut(s)	1139, 1321
Bsp13I	TCCGGA	1 cut(s)	1477
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	528, 573, 711
BspANI	GGCC	1 cut(s)	1269
BspCNI	CTCAG	6 cut(s)	97, 517, 562, 847, 1161, 1268
BspEI	TCCGGA	1 cut(s)	1477
BspFNI	CGCG	1 cut(s)	885
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	1417
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	1 cut(s)	335
BspOI	GCTAGC	1 cut(s)	833
BspPI	GGATC	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	908, 1185
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	3 cut(s)	528, 573, 711
BssT1I	CCWWGG	1 cut(s)	725
Bst4CI	ACNGT	5 cut(s)	283, 979, 1048, 1072, 1408
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	7 cut(s)	105, 525, 570, 855, 1169, 1255, 1307
BstF5I	GGATG	2 cut(s)	591, 849
BstFNI	CGCG	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	885, 1333
BstKTI	GATC	3 cut(s)	531, 576, 714
BstMBI	GATC	3 cut(s)	528, 573, 711
BstMWI	GCNNNNNNNGC	8 cut(s)	194, 395, 428, 637, 845, 1226, 1337, 1579
BstNSI	RCATGY	1 cut(s)	1473
BstSCI	CCNGG	1 cut(s)	1269
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	6 cut(s)	201, 406, 407, 820, 823, 1027
BstX2I	RGATCY	2 cut(s)	528, 573
BstYI	RGATCY	2 cut(s)	528, 573
BsuI	GTATCC	1 cut(s)	596
BsuRI	GGCC	1 cut(s)	1269
BtsCI	GGATG	2 cut(s)	591, 849
BtsIMutI	CAGTG	2 cut(s)	1178, 1440
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	831
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	2 cut(s)	885, 1333
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	1268
CseI	GACGC	1 cut(s)	1562
Csp6I	GTAC	1 cut(s)	287
CspAI	ACCGGT	1 cut(s)	929
CviAII	CATG	3 cut(s)	502, 1375, 1470
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	7 cut(s)	105, 525, 570, 855, 1169, 1255, 1307
DpnI	GATC	3 cut(s)	530, 575, 713
DpnII	GATC	3 cut(s)	528, 573, 711
Ecl136II	GAGCTC	1 cut(s)	1319
Eco130I	CCWWGG	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	1321
Eco53kI	GAGCTC	1 cut(s)	1319
Eco57I	CTGAAG	2 cut(s)	522, 666
Eco88I	CYCGRG	3 cut(s)	71, 625, 1395
EcoICRI	GAGCTC	1 cut(s)	1319
EcoT14I	CCWWGG	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	1321
ErhI	CCWWGG	1 cut(s)	725
FaeI	CATG	3 cut(s)	505, 1378, 1473
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	3 cut(s)	501, 1374, 1469
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	6 cut(s)	215, 396, 420, 834, 837, 1041
FokI	GGATG	2 cut(s)	578, 856
FriOI	GRGCYC	1 cut(s)	1321
Fsp4HI	GCNGC	6 cut(s)	215, 396, 420, 834, 837, 1041
FspBI	CTAG	3 cut(s)	546, 587, 830
GlaI	GCGC	2 cut(s)	884, 1332
GluI	GCNGC	6 cut(s)	215, 396, 420, 834, 837, 1041
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	670
HaeIII	GGCC	1 cut(s)	1269
HapII	CCGG	5 cut(s)	635, 930, 1011, 1271, 1478
HgaI	GACGC	1 cut(s)	1562
HhaI	GCGC	2 cut(s)	885, 1333
Hin1II	CATG	3 cut(s)	505, 1378, 1473
Hin6I	GCGC	2 cut(s)	883, 1331
HinP1I	GCGC	2 cut(s)	883, 1331
HinfI	GANTC	7 cut(s)	53, 154, 468, 672, 719, 895, 939
HpaII	CCGG	5 cut(s)	635, 930, 1011, 1271, 1478
HphI	GGTGA	2 cut(s)	525, 667
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	9 cut(s)	33, 52, 61, 106, 361, 411, 894, 1170, 1294
Hpy188III	TCNNGA	6 cut(s)	73, 263, 502, 569, 1395, 1478
Hpy8I	GTNNAC	1 cut(s)	467
Hpy99I	CGWCG	1 cut(s)	918
HpyAV	CCTTC	7 cut(s)	450, 546, 605, 690, 909, 1429, 1523
HpyCH4III	ACNGT	5 cut(s)	283, 979, 1048, 1072, 1408
HpyF10VI	GCNNNNNNNGC	8 cut(s)	194, 395, 428, 637, 845, 1226, 1337, 1579
HpyF3I	CTNAG	7 cut(s)	105, 525, 570, 855, 1169, 1255, 1307
Hsp92II	CATG	3 cut(s)	505, 1378, 1473
HspAI	GCGC	2 cut(s)	883, 1331
Kpn2I	TCCGGA	1 cut(s)	1477
Kzo9I	GATC	3 cut(s)	528, 573, 711
LmnI	GCTCC	3 cut(s)	75, 245, 442
Lsp1109I	GCAGC	6 cut(s)	201, 406, 407, 820, 823, 1027
LweI	GCATC	6 cut(s)	352, 600, 648, 961, 1334, 1555
MaeI	CTAG	3 cut(s)	546, 587, 830
MaeIII	GTNAC	2 cut(s)	109, 1060
MalI	GATC	3 cut(s)	530, 575, 713
MboI	GATC	3 cut(s)	528, 573, 711
MboII	GAAGA	9 cut(s)	128, 131, 134, 137, 247, 767, 1243, 1291, 1514
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	2 cut(s)	528, 573
MhlI	GDGCHC	2 cut(s)	1139, 1321
MluCI	AATT	9 cut(s)	205, 384, 613, 822, 888, 1014, 1209, 1263, 1401
MlyI	GAGTC	2 cut(s)	47, 462
MmeI	TCCRAC	3 cut(s)	976, 1016, 1240
MnlI	CCTC	6 cut(s)	4, 100, 259, 645, 799, 1314
MroI	TCCGGA	1 cut(s)	1477
MseI	TTAA	1 cut(s)	1017
MslI	CAYNNNNRTG	1 cut(s)	1470
MspI	CCGG	5 cut(s)	635, 930, 1011, 1271, 1478
MspR9I	CCNGG	1 cut(s)	1271
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	2 cut(s)	28, 924
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	8 cut(s)	194, 395, 428, 637, 845, 1226, 1337, 1579
NciI	CCSGG	1 cut(s)	1271
NdeII	GATC	3 cut(s)	528, 573, 711
NheI	GCTAGC	1 cut(s)	829
NlaIII	CATG	3 cut(s)	505, 1378, 1473
NlaIV	GGNNCC	1 cut(s)	1417
NspI	RCATGY	1 cut(s)	1473
PaeR7I	CTCGAG	1 cut(s)	1395
PagI	TCATGA	1 cut(s)	501
PaqCI	CACCTGC	1 cut(s)	335
PciI	ACATGT	1 cut(s)	1469
PctI	GAATGC	2 cut(s)	28, 924
PfeI	GAWTC	5 cut(s)	154, 672, 719, 895, 939
PinAI	ACCGGT	1 cut(s)	929
PkrI	GCNGC	6 cut(s)	216, 397, 421, 835, 838, 1042
PleI	GAGTC	2 cut(s)	47, 462
PpsI	GAGTC	2 cut(s)	47, 462
PscI	ACATGT	1 cut(s)	1469
PsiI	TTATAA	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	1321
PspFI	CCCAGC	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	1417
PspPI	GGNCC	1 cut(s)	1268
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	528, 573
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	1470
SacI	GAGCTC	1 cut(s)	1321
SaqAI	TTAA	1 cut(s)	1017
SatI	GCNGC	6 cut(s)	215, 396, 420, 834, 837, 1041
Sau3AI	GATC	3 cut(s)	528, 573, 711
Sau96I	GGNCC	1 cut(s)	1268
SchI	GAGTC	2 cut(s)	47, 462
ScrFI	CCNGG	1 cut(s)	1271
SduI	GDGCHC	2 cut(s)	1139, 1321
SfaNI	GCATC	6 cut(s)	352, 600, 648, 961, 1334, 1555
SfcI	CTRYAG	1 cut(s)	837
Sfr274I	CTCGAG	1 cut(s)	1395
SlaI	CTCGAG	1 cut(s)	1395
SmiMI	CAYNNNNRTG	1 cut(s)	1470
SmlI	CTYRAG	2 cut(s)	1320, 1395
SmoI	CTYRAG	2 cut(s)	1320, 1395
Sse9I	AATT	9 cut(s)	205, 384, 613, 822, 888, 1014, 1209, 1263, 1401
SspI	AATATT	1 cut(s)	1224
SspMI	CTAG	3 cut(s)	546, 587, 830
SstI	GAGCTC	1 cut(s)	1321
StyD4I	CCNGG	1 cut(s)	1269
StyI	CCWWGG	1 cut(s)	725
TaaI	ACNGT	5 cut(s)	283, 979, 1048, 1072, 1408
TaqI	TCGA	6 cut(s)	373, 611, 913, 1315, 1396, 1509
TasI	AATT	9 cut(s)	205, 384, 613, 822, 888, 1014, 1209, 1263, 1401
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	5 cut(s)	154, 672, 719, 895, 939
Tru1I	TTAA	1 cut(s)	1017
Tru9I	TTAA	1 cut(s)	1017
TscAI	CASTG	2 cut(s)	1185, 1440
TseI	GCWGC	6 cut(s)	214, 395, 419, 833, 836, 1040
TspDTI	ATGAA	9 cut(s)	113, 129, 247, 462, 552, 879, 1066, 1454, 1542
TspRI	CASTG	2 cut(s)	1185, 1440
XapI	RAATTY	2 cut(s)	822, 888
XceI	RCATGY	1 cut(s)	1473
XhoI	CTCGAG	1 cut(s)	1395
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	3 cut(s)	546, 587, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.