Rh5DG054400
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
4658555 .. 4661850
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG054400.1

Sequence Viewer

Length: 1611 bp
ATGGGTTTTGAGGAAAACAGGAATGCTGGTCAGAATGGAGTGTTTGGGTCTGACTCGTCTGAGTTTCAACTCGGGAGCAAGAACAAATACAAGAGAATGAAGTCTGAGGTAACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGTTCATTCACAAAGGAGAATCGTGGAACAAAGAAATATGTGTTTGCTTGTGCCATCTTTGCTTCTCTCAATTCTGTGCTGCTTGGATATGATGTGGGTGTTATGAGTGGAGCTATTCTCTTCATTCAGGAGGATTTGAAAATCACAGTTGTACAACAAGAACTTCTTGTTGGGATTTTGAGCATAATCTCCCTATTGGGTAGTTTAGCAGGTGGGAAAACATCAGATGCCATTGGTCGAAAATGGACAATTGCATTTGCAGCCTTTATCTTTCAGACAGGTGCTGCTGTAATGGCACTTGCTCCTTCTTATGAAGTATTGATGATTGGTAGACTCTTTGCTGGGATTGGTATAGGATTTGGGGTCATGATTGCACCTGTATATATTGCTGAGATCTCACCTTCAGTGGCTAGGGGTTCGCTTACTTCATTTCCTGAGATCTTTATAAATCTAGGCATCCTTCTTGGATACATATCGAATTATGCTTTCTCGGGGCTTCCGGTGCATATAAGCTGGAGGGTGATGCTTGGTGTGGGAATCATACCTTCAGTCTTTCTTGGATTTGCTCTTTTTGTGATCCCCGAATCCCCAAGGTGGTTAGTTATGCAGAACAGGATTGAAGAAGCGAGAATAGTATTGACCAAGACGAATGAGAGTGAAAAAGAAGCTGAGGAGAGATTGGCAGAAATTCAGCTAGCTGCTGCAGGGATGGCTAATGCTGAGATTCCTGAGAATAATGAAGCAAAAGCTATATGGCGCGAAATTCTGAATCCTTCTCCCCCAGTTCGACGAATGCTGATTACCGGTTGTGGAATCCAATGTTTCCAACAGATTACAGGCATTGATGCAACTGTGTATTATAGTCCAACCATTTTCAAAAATGCCGGAATTAAAGGCAACACTCAACTTCTTGCTGCAACTGTAATTGTTGGGGTTACAAAGACTGTGTTCATCTTGGTAGCTATCTTTCTTATTGACAAAGTGGGGAGAAAGCCTTTGCTTTATGTGAGCACTATTGGAATGACTACTTGCTTACTTGGTCTGAGCCTTGCCCTGGCTTTTCTTGGAAATGGAAAACTTGGAATTGGATTGGCAATATTAGCCGTTTGTGGAAATGTAGCTTTCTTCTCAGTTGGAATTGGCCCGGTTTGTTGGGTCTTGTCATCTGAAATCTTCCCTCTAAGGCTTCGAGCTCAAGCATCTGCGCTTGGGGCAGTTGGTAGTAGGGTTAGTAGTGGTGTGATTACCATGTCATTTCTCTCGGTATCTCGAGCAATTACAGTAGCAGGAACCTTCTTTGTTTTTTCAGTGATTTCAGCACTCTCGGTTGTTTTTGTTCATACATGTGTTCCGGAAACAAAAGGGAAGTCTTTAGAAGAAATCGAAATGATTTTCCATCATGAAGGGGAGTGGCAAGGCAGTGAAGTAGAAATGGGAGATGCACAGCGTCTAATGCAAAAAGAATAA

Protein Analysis

536

Amino Acids

57.77

Weight (kDa)

5.39

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 65 - 513 4.5e-111 Sugar (and other) transporter
MFS_1 PF07690 71 - 462 4.3e-33 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 590
AarI CACCTGC 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 475
AccII CGCG 1 cut(s) 903
AccIII TCCGGA 1 cut(s) 1495
AclWI GGATC 1 cut(s) 715
AcsI RAATTY 2 cut(s) 831, 906
AcuI CTGAAG 2 cut(s) 531, 675
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 738, 1198
AflIII ACRYGT 1 cut(s) 1487
AgeI ACCGGT 1 cut(s) 947
AgsI TTSAA 4 cut(s) 68, 283, 764, 1021
AjnI CCWGG 1 cut(s) 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 9 cut(s) 257, 657, 812, 838, 842, 893, 1106, 1265, 1337
AluI AGCT 9 cut(s) 257, 657, 812, 838, 842, 893, 1106, 1265, 1337
Alw21I GWGCWC 2 cut(s) 1157, 1339
AlwI GGATC 1 cut(s) 715
AlwNI CAGNNNCTG 1 cut(s) 428
Ama87I CYCGRG 3 cut(s) 71, 634, 1413
Aor13HI TCCGGA 1 cut(s) 1495
AoxI GGCC 1 cut(s) 1285
ApeKI GCWGC 6 cut(s) 223, 404, 428, 842, 845, 1058
ApoI RAATTY 2 cut(s) 831, 906
ArsI GACNNNNNNTTYG 2 cut(s) 1496, 1528
AsiGI ACCGGT 1 cut(s) 947
AspLEI GCGC 2 cut(s) 903, 1351
AspS9I GGNCC 1 cut(s) 1286
AsuC2I CCSGG 1 cut(s) 1289
AsuHPI GGTGA 2 cut(s) 534, 676
AsuNHI GCTAGC 1 cut(s) 838
AvaI CYCGRG 3 cut(s) 71, 634, 1413
BanII GRGCYC 1 cut(s) 1339
Bbv12I GWGCWC 2 cut(s) 1157, 1339
BbvCI CCTCAGC 1 cut(s) 813
BbvI GCAGC 6 cut(s) 210, 415, 416, 829, 832, 1045
BccI CCATC 4 cut(s) 137, 206, 847, 1548
BceAI ACGGC 1 cut(s) 1232
BciT130I CCWGG 1 cut(s) 1199
BciVI GTATCC 1 cut(s) 605
BcnI CCSGG 1 cut(s) 1289
BfaI CTAG 3 cut(s) 555, 596, 839
BfmI CTRYAG 1 cut(s) 846
BfuAI ACCTGC 1 cut(s) 344
BfuI GTATCC 1 cut(s) 605
BglII AGATCT 2 cut(s) 537, 582
BisI GCNGC 6 cut(s) 224, 405, 429, 843, 846, 1059
BlsI GCNGC 6 cut(s) 225, 406, 430, 844, 847, 1060
Bme1390I CCNGG 2 cut(s) 1199, 1289
BmeT110I CYCGRG 3 cut(s) 71, 634, 1413
BmgT120I GGNCC 1 cut(s) 1286
BmiI GGNNCC 1 cut(s) 1435
BmrFI CCNGG 2 cut(s) 1199, 1289
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 6 cut(s) 361, 609, 657, 979, 1352, 1573
BmtI GCTAGC 1 cut(s) 842
BmuI ACTGGG 1 cut(s) 920
BplI GAGNNNNNCTC 2 cut(s) 246, 278
BpmI CTGGAG 1 cut(s) 679
Bpu10I CCTNAGC 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 1323
BpuMI CCSGG 1 cut(s) 1289
BsaBI GATNNNNATC 1 cut(s) 616
BsaJI CCNNGG 2 cut(s) 734, 1197
BsaWI WCCGGW 3 cut(s) 643, 947, 1495
Bsc4I CCNNNNNNNGG 2 cut(s) 738, 1198
Bse118I RCCGGY 1 cut(s) 947
Bse1I ACTGG 1 cut(s) 926
Bse8I GATNNNNATC 1 cut(s) 616
BseAI TCCGGA 1 cut(s) 1495
BseBI CCWGG 1 cut(s) 1199
BseDI CCNNGG 2 cut(s) 734, 1197
BseGI GGATG 2 cut(s) 600, 858
BseJI GATNNNNATC 1 cut(s) 616
BseLI CCNNNNNNNGG 2 cut(s) 738, 1198
BseMII CTCAG 9 cut(s) 51, 96, 525, 570, 804, 855, 864, 1178, 1287
BseNI ACTGG 1 cut(s) 926
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 6 cut(s) 210, 415, 416, 829, 832, 1045
BseYI CCCAGC 1 cut(s) 485
Bsh1236I CGCG 1 cut(s) 903
BshFI GGCC 1 cut(s) 1287
BshTI ACCGGT 1 cut(s) 947
BsiHKAI GWGCWC 2 cut(s) 1157, 1339
BsiHKCI CYCGRG 3 cut(s) 71, 634, 1413
BsiSI CCGG 5 cut(s) 644, 948, 1029, 1289, 1496
BslI CCNNNNNNNGG 2 cut(s) 738, 1198
BsmI GAATGC 2 cut(s) 28, 942
BsnI GGCC 1 cut(s) 1287
BsoBI CYCGRG 3 cut(s) 71, 634, 1413
Bsp1286I GDGCHC 2 cut(s) 1157, 1339
Bsp13I TCCGGA 1 cut(s) 1495
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 3 cut(s) 537, 582, 720
BspANI GGCC 1 cut(s) 1287
BspCNI CTCAG 9 cut(s) 52, 97, 526, 571, 805, 856, 865, 1179, 1286
BspEI TCCGGA 1 cut(s) 1495
BspFNI CGCG 1 cut(s) 903
BspHI TCATGA 2 cut(s) 510, 1543
BspLI GGNNCC 1 cut(s) 1435
BspMAI CTGCAG 1 cut(s) 850
BspMI ACCTGC 1 cut(s) 344
BspOI GCTAGC 1 cut(s) 842
BspPI GGATC 1 cut(s) 715
BsrFI RCCGGY 1 cut(s) 947
BsrGI TGTACA 1 cut(s) 295
BsrI ACTGG 1 cut(s) 926
BssAI RCCGGY 1 cut(s) 947
BssECI CCNNGG 2 cut(s) 734, 1197
BssMI GATC 3 cut(s) 537, 582, 720
BssT1I CCWWGG 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 1199
Bst4CI ACNGT 5 cut(s) 292, 997, 1066, 1090, 1426
Bst6I CTCTTC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 840
BstF5I GGATG 2 cut(s) 600, 858
BstFNI CGCG 1 cut(s) 903
BstHHI GCGC 2 cut(s) 903, 1351
BstKTI GATC 3 cut(s) 540, 585, 723
BstMBI GATC 3 cut(s) 537, 582, 720
BstMWI GCNNNNNNNGC 8 cut(s) 203, 404, 437, 646, 854, 1244, 1355, 1597
BstNI CCWGG 1 cut(s) 1199
BstNSI RCATGY 1 cut(s) 1491
BstSCI CCNGG 2 cut(s) 1197, 1287
BstSFI CTRYAG 1 cut(s) 846
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 6 cut(s) 210, 415, 416, 829, 832, 1045
BstX2I RGATCY 2 cut(s) 537, 582
BstYI RGATCY 2 cut(s) 537, 582
BsuI GTATCC 1 cut(s) 605
BsuRI GGCC 1 cut(s) 1287
BtsCI GGATG 2 cut(s) 600, 858
BtsI GCAGTG 1 cut(s) 1570
BtsIMutI CAGTG 3 cut(s) 555, 1458, 1570
BveI ACCTGC 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 840
CaiI CAGNNNCTG 1 cut(s) 428
CciI TCATGA 2 cut(s) 510, 1543
CfoI GCGC 2 cut(s) 903, 1351
Cfr10I RCCGGY 1 cut(s) 947
Cfr13I GGNCC 1 cut(s) 1286
CseI GACGC 1 cut(s) 1580
Csp6I GTAC 1 cut(s) 296
CspAI ACCGGT 1 cut(s) 947
CviAII CATG 4 cut(s) 511, 1393, 1488, 1544
CviQI GTAC 1 cut(s) 296
DpnI GATC 3 cut(s) 539, 584, 722
DpnII GATC 3 cut(s) 537, 582, 720
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Ecl136II GAGCTC 1 cut(s) 1337
Eco130I CCWWGG 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 1339
Eco53kI GAGCTC 1 cut(s) 1337
Eco57I CTGAAG 2 cut(s) 531, 675
Eco88I CYCGRG 3 cut(s) 71, 634, 1413
EcoICRI GAGCTC 1 cut(s) 1337
EcoRII CCWGG 1 cut(s) 1197
EcoT14I CCWWGG 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 1339
ErhI CCWWGG 1 cut(s) 734
FaeI CATG 4 cut(s) 514, 1396, 1491, 1547
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 4 cut(s) 510, 1392, 1487, 1543
FblI GTMKAC 1 cut(s) 475
Fnu4HI GCNGC 6 cut(s) 224, 405, 429, 843, 846, 1059
FokI GGATG 2 cut(s) 587, 865
FriOI GRGCYC 1 cut(s) 1339
Fsp4HI GCNGC 6 cut(s) 224, 405, 429, 843, 846, 1059
FspBI CTAG 3 cut(s) 555, 596, 839
GlaI GCGC 2 cut(s) 902, 1350
GluI GCNGC 6 cut(s) 224, 405, 429, 843, 846, 1059
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 1 cut(s) 1287
HapII CCGG 5 cut(s) 644, 948, 1029, 1289, 1496
HgaI GACGC 1 cut(s) 1580
HhaI GCGC 2 cut(s) 903, 1351
Hin1II CATG 4 cut(s) 514, 1396, 1491, 1547
Hin6I GCGC 2 cut(s) 901, 1349
HinP1I GCGC 2 cut(s) 901, 1349
HinfI GANTC 8 cut(s) 53, 163, 477, 681, 728, 868, 913, 957
HpaII CCGG 5 cut(s) 644, 948, 1029, 1289, 1496
HphI GGTGA 2 cut(s) 534, 676
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 9 cut(s) 33, 52, 61, 106, 370, 420, 912, 1188, 1312
Hpy188III TCNNGA 8 cut(s) 73, 272, 511, 578, 872, 1413, 1496, 1544
Hpy8I GTNNAC 1 cut(s) 476
Hpy99I CGWCG 1 cut(s) 936
HpyAV CCTTC 7 cut(s) 459, 555, 614, 699, 927, 1447, 1541
HpyCH4III ACNGT 5 cut(s) 292, 997, 1066, 1090, 1426
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 404, 437, 646, 854, 1244, 1355, 1597
Hsp92II CATG 4 cut(s) 514, 1396, 1491, 1547
HspAI GCGC 2 cut(s) 901, 1349
Kpn2I TCCGGA 1 cut(s) 1495
Kzo9I GATC 3 cut(s) 537, 582, 720
LmnI GCTCC 3 cut(s) 75, 254, 451
Lsp1109I GCAGC 6 cut(s) 210, 415, 416, 829, 832, 1045
LweI GCATC 6 cut(s) 361, 609, 657, 979, 1352, 1573
MaeI CTAG 3 cut(s) 555, 596, 839
MaeIII GTNAC 2 cut(s) 109, 1078
MalI GATC 3 cut(s) 539, 584, 722
MboI GATC 3 cut(s) 537, 582, 720
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 2 cut(s) 537, 582
MhlI GDGCHC 2 cut(s) 1157, 1339
MlyI GAGTC 2 cut(s) 47, 471
MmeI TCCRAC 3 cut(s) 994, 1034, 1258
MnlI CCTC 6 cut(s) 4, 100, 268, 654, 808, 1332
MroI TCCGGA 1 cut(s) 1495
MseI TTAA 1 cut(s) 1035
MslI CAYNNNNRTG 1 cut(s) 1488
MspI CCGG 5 cut(s) 644, 948, 1029, 1289, 1496
MspR9I CCNGG 2 cut(s) 1199, 1289
MunI CAATTG 1 cut(s) 393
Mva1269I GAATGC 2 cut(s) 28, 942
MvaI CCWGG 1 cut(s) 1199
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 8 cut(s) 203, 404, 437, 646, 854, 1244, 1355, 1597
NciI CCSGG 1 cut(s) 1289
NdeII GATC 3 cut(s) 537, 582, 720
NheI GCTAGC 1 cut(s) 838
NlaIII CATG 4 cut(s) 514, 1396, 1491, 1547
NlaIV GGNNCC 1 cut(s) 1435
NspI RCATGY 1 cut(s) 1491
PaeR7I CTCGAG 1 cut(s) 1413
PagI TCATGA 2 cut(s) 510, 1543
PaqCI CACCTGC 1 cut(s) 344
PciI ACATGT 1 cut(s) 1487
PctI GAATGC 2 cut(s) 28, 942
PfeI GAWTC 6 cut(s) 163, 681, 728, 868, 913, 957
PinAI ACCGGT 1 cut(s) 947
PkrI GCNGC 6 cut(s) 225, 406, 430, 844, 847, 1060
PleI GAGTC 2 cut(s) 47, 471
PpsI GAGTC 2 cut(s) 47, 471
PscI ACATGT 1 cut(s) 1487
PsiI TTATAA 1 cut(s) 590
Psp124BI GAGCTC 1 cut(s) 1339
Psp6I CCWGG 1 cut(s) 1197
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 1 cut(s) 1197
PspN4I GGNNCC 1 cut(s) 1435
PspPI GGNCC 1 cut(s) 1286
PstI CTGCAG 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 2 cut(s) 537, 582
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 1488
SacI GAGCTC 1 cut(s) 1339
SaqAI TTAA 1 cut(s) 1035
SatI GCNGC 6 cut(s) 224, 405, 429, 843, 846, 1059
Sau3AI GATC 3 cut(s) 537, 582, 720
Sau96I GGNCC 1 cut(s) 1286
SchI GAGTC 2 cut(s) 47, 471
ScrFI CCNGG 2 cut(s) 1199, 1289
SduI GDGCHC 2 cut(s) 1157, 1339
SfaNI GCATC 6 cut(s) 361, 609, 657, 979, 1352, 1573
SfcI CTRYAG 1 cut(s) 846
Sfr274I CTCGAG 1 cut(s) 1413
SlaI CTCGAG 1 cut(s) 1413
SmiMI CAYNNNNRTG 1 cut(s) 1488
SmlI CTYRAG 2 cut(s) 1338, 1413
SmoI CTYRAG 2 cut(s) 1338, 1413
SspI AATATT 1 cut(s) 1242
SspMI CTAG 3 cut(s) 555, 596, 839
SstI GAGCTC 1 cut(s) 1339
StyD4I CCNGG 2 cut(s) 1197, 1287
StyI CCWWGG 1 cut(s) 734
TaaI ACNGT 5 cut(s) 292, 997, 1066, 1090, 1426
TaqI TCGA 6 cut(s) 382, 620, 931, 1333, 1414, 1527
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 6 cut(s) 163, 681, 728, 868, 913, 957
Tru1I TTAA 1 cut(s) 1035
Tru9I TTAA 1 cut(s) 1035
TscAI CASTG 3 cut(s) 555, 1458, 1570
TseI GCWGC 6 cut(s) 223, 404, 428, 842, 845, 1058
TspDTI ATGAA 9 cut(s) 113, 138, 256, 471, 561, 897, 1084, 1472, 1560
TspRI CASTG 3 cut(s) 555, 1458, 1570
XapI RAATTY 2 cut(s) 831, 906
XceI RCATGY 1 cut(s) 1491
XhoI CTCGAG 1 cut(s) 1413
XmiI GTMKAC 1 cut(s) 475
XspI CTAG 3 cut(s) 555, 596, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.