Rh5CG065200
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
4983944 .. 4987096
3153 bp
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UTR
Exon/CDS
Intron
Rh5CG065200.1

Sequence Viewer

Length: 1590 bp
ATGGGTTTTGAGGAAAACAGGAATGCTGGTCAGAATGGAGTGTTTGGGTCTGACTCGTCCGAGTTTCAACTCGGGAGCAAGAACAAATACAAGAGAATGAAGTCTGAGGTAACAGAAGAAGAAGAAGAAGATGGTTCATTCACAAAGGAGAATCGTGGAACAAAGAAATATGTGTTTGCTTGTGCCATCTTTGCTTCTCTCAATTCTGTGCTGCTTGGATATGATGTGGGTGTTATGAGTGGAGCTATTCTCTTCATTCAGGAGGATTTGAAAATCACAGTTGTACAACAAGAACTTCTTGTTGGGATTTTGAGCATAATCTCCCTATTGGGTAGTTTAGCAGGTGGGAAAACATCAGACGCCATTGGTCGAAAATGGACAATTGCATTTGCAGCCTTTATCTTTCAGACAGGTGCTGCTGTAATGGCACTTGCTCCTTCTTATGAAGTATTGATGATTGGTAGACTCTTTGCTGGGATTGGTATAGGATTTGGGGTCATGATTGCACCTGTATATATTGCTGAGATCTCACCTTCAGTAGCTAGGGGTTCGCTTACTTCATTTCCTGAGATCTTTATAAATCTAGGCATCCTTCTTGGATACATATCGAATTATGCTTTCTCGGGGCTTCCAGTGCATATAAGCTGGAGGGTGATGCTTGGTGTGGGAATCATACCTTCAGTCTTTCTTGGATTTGCTCTTTTTGTGATCCCCGAATCCCCAAGGTGGTTAGTTATGCAGAACAGGATTGAAGAAGCGAGAATAGTATTGACCAAGACGAATGAAAGTGAAAAAGAAGTTGAGGAGAGATTGGCAGAAATTCAGCTAGCTGCTGCAGGGATGGCTAATGCTGAGAATAATGAAGCAAAAGCTATATGGCGCGAAATTCTGAATCCGTCTCCCCCAGTTCGACGAATGCTGATTACCGGTTGTGGAATCCAATGTTTCCAACAGATTACAGGCATTGATGCAACTGTGTATTATAGTCCAACCATTTTCAAAAATGCCGGAATTAAAGGCAACACTCAACTTCTTGCTGCAACTGTTATTGTTGGGGTTACAAAGACTCTGTTCATCTTGGTAGCTATCTTTCTTATTGACAAAGTGGGCAGAAAGCCTTTGCTTTATGTGAGCACTATTGGAATGACTACTTGCTTACTTGGTCTGAGCCTTGCACTGGCTTTTCTTGGAAATGGAAAGCTTGGAATTGGATTGGCAATATTAGCCGTTTGTGGAAATGTAGCTTTCTTCTCAGTTGGAATTGGCCCGGTTTGTTGGGTCTTGTCATCTGAAATCTTCCCTCTAAGGCTTCGAGCTCAAGCATCTGCGCTTGGGGCAGTTGGTAGTAGGGTTAGTAGTGGTGTGATTACCATGTCATTTCTCTCGGTATCTCGAGCAATTACAGTAGCAGGAACCTTCTTTGTTTTTTCAGTGATTTCAGCACTCTCGGTTGTTTTTGTTCATACTTGTGTTCCGGAAACAAAAGGGAAGTCTTTAGAAGAAATCGAAATGATTTTCCATCATGAAGGGGAGTGGCAAGGAAGTGAAGTAGAAATGGGAGATGCACAGCGTCTAATGCAAAAAGAATAA

Protein Analysis

529

Amino Acids

56.95

Weight (kDa)

6.0

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 61 - 506 3.6e-111 Sugar (and other) transporter
MFS_1 PF07690 67 - 455 8e-33 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AarI CACCTGC 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 332
AccI GTMKAC 1 cut(s) 463
AccII CGCG 1 cut(s) 882
AccIII TCCGGA 1 cut(s) 1474
AclWI GGATC 1 cut(s) 703
AcsI RAATTY 2 cut(s) 819, 885
AcuI CTGAAG 2 cut(s) 519, 663
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 726, 1177
AgeI ACCGGT 1 cut(s) 926
AgsI TTSAA 4 cut(s) 68, 271, 752, 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
Alw21I GWGCWC 2 cut(s) 1136, 1318
Alw26I GTCTC 1 cut(s) 903
AlwI GGATC 1 cut(s) 703
AlwNI CAGNNNCTG 1 cut(s) 416
Ama87I CYCGRG 3 cut(s) 71, 622, 1392
Aor13HI TCCGGA 1 cut(s) 1474
AoxI GGCC 1 cut(s) 1264
ApeKI GCWGC 6 cut(s) 211, 392, 416, 830, 833, 1037
ApoI RAATTY 2 cut(s) 819, 885
ArsI GACNNNNNNTTYG 2 cut(s) 1475, 1507
AsiGI ACCGGT 1 cut(s) 926
AspLEI GCGC 2 cut(s) 882, 1330
AspS9I GGNCC 1 cut(s) 1265
AsuC2I CCSGG 1 cut(s) 1268
AsuHPI GGTGA 2 cut(s) 522, 664
AsuNHI GCTAGC 1 cut(s) 826
AvaI CYCGRG 3 cut(s) 71, 622, 1392
BanII GRGCYC 1 cut(s) 1318
Bbv12I GWGCWC 2 cut(s) 1136, 1318
BbvI GCAGC 6 cut(s) 198, 403, 404, 817, 820, 1024
BccI CCATC 4 cut(s) 125, 194, 835, 1527
BceAI ACGGC 1 cut(s) 1211
BciVI GTATCC 1 cut(s) 593
BcnI CCSGG 1 cut(s) 1268
BcoDI GTCTC 1 cut(s) 903
BfaI CTAG 3 cut(s) 543, 584, 827
BfmI CTRYAG 1 cut(s) 834
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 1 cut(s) 593
BglII AGATCT 2 cut(s) 525, 570
BisI GCNGC 6 cut(s) 212, 393, 417, 831, 834, 1038
BlsI GCNGC 6 cut(s) 213, 394, 418, 832, 835, 1039
Bme1390I CCNGG 1 cut(s) 1268
BmeT110I CYCGRG 3 cut(s) 71, 622, 1392
BmgT120I GGNCC 1 cut(s) 1265
BmiI GGNNCC 1 cut(s) 1414
BmrFI CCNGG 1 cut(s) 1268
BmrI ACTGGG 1 cut(s) 899
BmsI GCATC 5 cut(s) 597, 645, 958, 1331, 1552
BmtI GCTAGC 1 cut(s) 830
BmuI ACTGGG 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 667
BpuEI CTTGAG 1 cut(s) 1302
BpuMI CCSGG 1 cut(s) 1268
BsaBI GATNNNNATC 1 cut(s) 604
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 1 cut(s) 722
BsaWI WCCGGW 2 cut(s) 926, 1474
Bsc4I CCNNNNNNNGG 2 cut(s) 726, 1177
Bse118I RCCGGY 1 cut(s) 926
Bse1I ACTGG 3 cut(s) 632, 905, 1182
Bse8I GATNNNNATC 1 cut(s) 604
BseAI TCCGGA 1 cut(s) 1474
BseDI CCNNGG 1 cut(s) 722
BseGI GGATG 2 cut(s) 588, 846
BseJI GATNNNNATC 1 cut(s) 604
BseLI CCNNNNNNNGG 2 cut(s) 726, 1177
BseMII CTCAG 6 cut(s) 96, 513, 558, 843, 1157, 1266
BseNI ACTGG 3 cut(s) 632, 905, 1182
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 6 cut(s) 198, 403, 404, 817, 820, 1024
BseYI CCCAGC 1 cut(s) 473
Bsh1236I CGCG 1 cut(s) 882
BshFI GGCC 1 cut(s) 1266
BshTI ACCGGT 1 cut(s) 926
BsiHKAI GWGCWC 2 cut(s) 1136, 1318
BsiHKCI CYCGRG 3 cut(s) 71, 622, 1392
BsiSI CCGG 4 cut(s) 927, 1008, 1268, 1475
BslI CCNNNNNNNGG 2 cut(s) 726, 1177
BsmAI GTCTC 1 cut(s) 903
BsmBI CGTCTC 1 cut(s) 903
BsmI GAATGC 2 cut(s) 28, 921
BsnI GGCC 1 cut(s) 1266
BsoBI CYCGRG 3 cut(s) 71, 622, 1392
Bsp1286I GDGCHC 2 cut(s) 1136, 1318
Bsp13I TCCGGA 1 cut(s) 1474
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 3 cut(s) 525, 570, 708
BspANI GGCC 1 cut(s) 1266
BspCNI CTCAG 6 cut(s) 97, 514, 559, 844, 1158, 1265
BspEI TCCGGA 1 cut(s) 1474
BspFNI CGCG 1 cut(s) 882
BspHI TCATGA 2 cut(s) 498, 1522
BspLI GGNNCC 1 cut(s) 1414
BspMAI CTGCAG 1 cut(s) 838
BspMI ACCTGC 1 cut(s) 332
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 1 cut(s) 703
BsrFI RCCGGY 1 cut(s) 926
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 3 cut(s) 632, 905, 1182
BssAI RCCGGY 1 cut(s) 926
BssECI CCNNGG 1 cut(s) 722
BssMI GATC 3 cut(s) 525, 570, 708
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 722
Bst4CI ACNGT 4 cut(s) 280, 976, 1045, 1405
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 828
BstDEI CTNAG 7 cut(s) 105, 522, 567, 852, 1166, 1252, 1304
BstF5I GGATG 2 cut(s) 588, 846
BstFNI CGCG 1 cut(s) 882
BstHHI GCGC 2 cut(s) 882, 1330
BstKTI GATC 3 cut(s) 528, 573, 711
BstMAI GTCTC 1 cut(s) 903
BstMBI GATC 3 cut(s) 525, 570, 708
BstMWI GCNNNNNNNGC 8 cut(s) 191, 392, 425, 634, 842, 1223, 1334, 1576
BstSCI CCNGG 1 cut(s) 1266
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 1 cut(s) 882
BstV1I GCAGC 6 cut(s) 198, 403, 404, 817, 820, 1024
BstX2I RGATCY 2 cut(s) 525, 570
BstYI RGATCY 2 cut(s) 525, 570
BsuI GTATCC 1 cut(s) 593
BsuRI GGCC 1 cut(s) 1266
BtsCI GGATG 2 cut(s) 588, 846
BtsIMutI CAGTG 3 cut(s) 639, 1175, 1437
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 828
CaiI CAGNNNCTG 1 cut(s) 416
CciI TCATGA 2 cut(s) 498, 1522
CfoI GCGC 2 cut(s) 882, 1330
Cfr10I RCCGGY 1 cut(s) 926
Cfr13I GGNCC 1 cut(s) 1265
CseI GACGC 2 cut(s) 368, 1559
Csp6I GTAC 1 cut(s) 284
CspAI ACCGGT 1 cut(s) 926
CviAII CATG 3 cut(s) 499, 1372, 1523
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 7 cut(s) 105, 522, 567, 852, 1166, 1252, 1304
DpnI GATC 3 cut(s) 527, 572, 710
DpnII GATC 3 cut(s) 525, 570, 708
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 1316
Eco130I CCWWGG 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 1318
Eco53kI GAGCTC 1 cut(s) 1316
Eco57I CTGAAG 2 cut(s) 519, 663
Eco88I CYCGRG 3 cut(s) 71, 622, 1392
EcoICRI GAGCTC 1 cut(s) 1316
EcoT14I CCWWGG 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 1318
ErhI CCWWGG 1 cut(s) 722
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 3 cut(s) 502, 1375, 1526
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 3 cut(s) 498, 1371, 1522
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 6 cut(s) 212, 393, 417, 831, 834, 1038
FokI GGATG 2 cut(s) 575, 853
FriOI GRGCYC 1 cut(s) 1318
Fsp4HI GCNGC 6 cut(s) 212, 393, 417, 831, 834, 1038
FspBI CTAG 3 cut(s) 543, 584, 827
GlaI GCGC 2 cut(s) 881, 1329
GluI GCNGC 6 cut(s) 212, 393, 417, 831, 834, 1038
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 1 cut(s) 667
HaeIII GGCC 1 cut(s) 1266
HapII CCGG 4 cut(s) 927, 1008, 1268, 1475
HgaI GACGC 2 cut(s) 368, 1559
HhaI GCGC 2 cut(s) 882, 1330
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 3 cut(s) 502, 1375, 1526
Hin6I GCGC 2 cut(s) 880, 1328
HinP1I GCGC 2 cut(s) 880, 1328
HindIII AAGCTT 1 cut(s) 1199
HinfI GANTC 8 cut(s) 53, 151, 465, 669, 716, 892, 936, 1066
HpaII CCGG 4 cut(s) 927, 1008, 1268, 1475
HphI GGTGA 2 cut(s) 522, 664
Hpy166II GTNNAC 1 cut(s) 464
Hpy188I TCNGA 9 cut(s) 33, 52, 61, 106, 358, 408, 891, 1167, 1291
Hpy188III TCNNGA 7 cut(s) 73, 260, 499, 566, 1392, 1475, 1523
Hpy8I GTNNAC 1 cut(s) 464
Hpy99I CGWCG 1 cut(s) 915
HpyAV CCTTC 6 cut(s) 447, 543, 602, 687, 1426, 1520
HpyCH4III ACNGT 4 cut(s) 280, 976, 1045, 1405
HpyF10VI GCNNNNNNNGC 8 cut(s) 191, 392, 425, 634, 842, 1223, 1334, 1576
HpyF3I CTNAG 7 cut(s) 105, 522, 567, 852, 1166, 1252, 1304
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 3 cut(s) 502, 1375, 1526
HspAI GCGC 2 cut(s) 880, 1328
Kpn2I TCCGGA 1 cut(s) 1474
Kzo9I GATC 3 cut(s) 525, 570, 708
LmnI GCTCC 3 cut(s) 75, 242, 439
Lsp1109I GCAGC 6 cut(s) 198, 403, 404, 817, 820, 1024
LweI GCATC 5 cut(s) 597, 645, 958, 1331, 1552
MaeI CTAG 3 cut(s) 543, 584, 827
MaeIII GTNAC 2 cut(s) 109, 1057
MalI GATC 3 cut(s) 527, 572, 710
MboI GATC 3 cut(s) 525, 570, 708
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 525, 570
MhlI GDGCHC 2 cut(s) 1136, 1318
MluCI AATT 9 cut(s) 202, 381, 610, 819, 885, 1011, 1206, 1260, 1398
MlyI GAGTC 3 cut(s) 47, 459, 1060
MmeI TCCRAC 3 cut(s) 973, 1013, 1237
MnlI CCTC 6 cut(s) 4, 100, 256, 642, 796, 1311
MroI TCCGGA 1 cut(s) 1474
MseI TTAA 1 cut(s) 1014
MslI CAYNNNNRTG 1 cut(s) 1467
MspI CCGG 4 cut(s) 927, 1008, 1268, 1475
MspR9I CCNGG 1 cut(s) 1268
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 2 cut(s) 28, 921
MvnI CGCG 1 cut(s) 882
MwoI GCNNNNNNNGC 8 cut(s) 191, 392, 425, 634, 842, 1223, 1334, 1576
NciI CCSGG 1 cut(s) 1268
NdeII GATC 3 cut(s) 525, 570, 708
NheI GCTAGC 1 cut(s) 826
NlaIII CATG 3 cut(s) 502, 1375, 1526
NlaIV GGNNCC 1 cut(s) 1414
PaeR7I CTCGAG 1 cut(s) 1392
PagI TCATGA 2 cut(s) 498, 1522
PaqCI CACCTGC 1 cut(s) 332
PctI GAATGC 2 cut(s) 28, 921
PfeI GAWTC 5 cut(s) 151, 669, 716, 892, 936
PinAI ACCGGT 1 cut(s) 926
PkrI GCNGC 6 cut(s) 213, 394, 418, 832, 835, 1039
PleI GAGTC 3 cut(s) 47, 459, 1060
PpsI GAGTC 3 cut(s) 47, 459, 1060
PsiI TTATAA 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 1318
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 1414
PspPI GGNCC 1 cut(s) 1265
PstI CTGCAG 1 cut(s) 838
PstNI CAGNNNCTG 1 cut(s) 416
PsuI RGATCY 2 cut(s) 525, 570
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 1467
SacI GAGCTC 1 cut(s) 1318
SaqAI TTAA 1 cut(s) 1014
SatI GCNGC 6 cut(s) 212, 393, 417, 831, 834, 1038
Sau3AI GATC 3 cut(s) 525, 570, 708
Sau96I GGNCC 1 cut(s) 1265
SchI GAGTC 3 cut(s) 47, 459, 1060
ScrFI CCNGG 1 cut(s) 1268
SduI GDGCHC 2 cut(s) 1136, 1318
SfaNI GCATC 5 cut(s) 597, 645, 958, 1331, 1552
SfcI CTRYAG 1 cut(s) 834
Sfr274I CTCGAG 1 cut(s) 1392
SlaI CTCGAG 1 cut(s) 1392
SmiMI CAYNNNNRTG 1 cut(s) 1467
SmlI CTYRAG 2 cut(s) 1317, 1392
SmoI CTYRAG 2 cut(s) 1317, 1392
Sse9I AATT 9 cut(s) 202, 381, 610, 819, 885, 1011, 1206, 1260, 1398
SspI AATATT 1 cut(s) 1221
SspMI CTAG 3 cut(s) 543, 584, 827
SstI GAGCTC 1 cut(s) 1318
StyD4I CCNGG 1 cut(s) 1266
StyI CCWWGG 1 cut(s) 722
TaaI ACNGT 4 cut(s) 280, 976, 1045, 1405
TaqI TCGA 6 cut(s) 370, 608, 910, 1312, 1393, 1506
TasI AATT 9 cut(s) 202, 381, 610, 819, 885, 1011, 1206, 1260, 1398
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 5 cut(s) 151, 669, 716, 892, 936
Tru1I TTAA 1 cut(s) 1014
Tru9I TTAA 1 cut(s) 1014
TscAI CASTG 3 cut(s) 639, 1182, 1437
TseI GCWGC 6 cut(s) 211, 392, 416, 830, 833, 1037
TspGWI ACGGA 1 cut(s) 885
TspRI CASTG 3 cut(s) 639, 1182, 1437
XapI RAATTY 2 cut(s) 819, 885
XhoI CTCGAG 1 cut(s) 1392
XmiI GTMKAC 1 cut(s) 463
XspI CTAG 3 cut(s) 543, 584, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.