Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Forward (+)

3913196 .. 3915202

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCAGCTCATGATCAGAATTCAGCTCATGGCTACTCTTCTGGTGGGAGGAGCAACTACGGGAAAGCGCTCAACACATCCGTGGCACGAAATGAATGCTTCAAGTGTGGTCTGCCAGGACATTGGGCCAAAGATTGTCGTTCAGCAAGTGATCAAATGATGTATGGTACGAAAATGGGAACGGAAGCGTACTCAGGGTGGAGCAACTATGGGGGAGGAGATAGATCATCAGTTGCGCGAAATGATCAATGCTTCAAGTGCGGTCTCCCTGGACATTTGGCCCAAGGTTGCCCTTCTGCAGCTAATCAGGAAATGCGTGGACGCGTAAACAATTCCCAACCGGAGGTGGGAGGGGAGGGCTCGAGCAAAGGCCACATTGTTTACTCATATGGTGGAAGGAAAGGCTCTTACTGGGAAGATGACTGCTTCAAGTGTGGGCGCTCCGGACATTGGCAGCGGGAGTGCCCTTTGAATGGTGGAGGTGGTACCGATGATGGCTGTGATGGAAAGCGCAGAGAATTTGAGGTATCCTTGGGATGGCCGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

183

Amino Acids

19.6

Weight (kDa)

8.03

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	32 - 47	2.3e-06	Zinc knuckle
zf-CCHC	PF00098	142 - 156	1.3e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	485
AccII	CGCG	2 cut(s)	238, 324
AccIII	TCCGGA	1 cut(s)	443
AciI	CCGC	2 cut(s)	261, 457
AcoI	YGGCCR	1 cut(s)	539
AcsI	RAATTY	2 cut(s)	19, 518
AfaI	GTAC	3 cut(s)	169, 191, 487
AfeI	AGCGCT	1 cut(s)	69
AfiI	CCNNNNNNNGG	5 cut(s)	343, 347, 450, 473, 537
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	4 cut(s)	103, 256, 430, 472
AjnI	CCWGG	2 cut(s)	115, 268
AleI	CACNNNNGTG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	8, 26, 302
AluI	AGCT	3 cut(s)	8, 26, 302
Alw26I	GTCTC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	361
Aor13HI	TCCGGA	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	69
AoxI	GGCC	4 cut(s)	126, 279, 370, 539
ApeKI	GCWGC	2 cut(s)	299, 454
ApoI	RAATTY	2 cut(s)	19, 518
Asp718I	GGTACC	1 cut(s)	485
AspLEI	GCGC	4 cut(s)	70, 238, 441, 513
AspS9I	GGNCC	2 cut(s)	126, 280
AvaI	CYCGRG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	311, 466
BccI	CCATC	3 cut(s)	488, 497, 531
BceAI	ACGGC	1 cut(s)	526
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	2 cut(s)	117, 270
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	3 cut(s)	13, 151, 244
BcoDI	GTCTC	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	2 cut(s)	71, 442
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	300, 455
BlsI	GCNGC	2 cut(s)	301, 456
Bme1390I	CCNGG	2 cut(s)	117, 270
BmeT110I	CYCGRG	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	126, 280
BmiI	GGNNCC	1 cut(s)	487
BmrFI	CCNGG	2 cut(s)	117, 270
BmrI	ACTGGG	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	4 cut(s)	81, 268, 283, 531
BsaWI	WCCGGW	2 cut(s)	340, 443
Bsc4I	CCNNNNNNNGG	5 cut(s)	343, 347, 450, 473, 537
Bse1I	ACTGG	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	117, 270
BseDI	CCNNGG	4 cut(s)	81, 268, 283, 531
BseGI	GGATG	2 cut(s)	77, 542
BseLI	CCNNNNNNNGG	5 cut(s)	343, 347, 450, 473, 537
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	2 cut(s)	64, 231
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	311, 466
Bsh1236I	CGCG	2 cut(s)	238, 324
BshFI	GGCC	4 cut(s)	128, 281, 372, 541
BshNI	GGYRCC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	341, 444
BslI	CCNNNNNNNGG	5 cut(s)	343, 347, 450, 473, 537
BsmAI	GTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	4 cut(s)	128, 281, 372, 541
Bso31I	GGTCTC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	362, 467
Bsp13I	TCCGGA	1 cut(s)	443
Bsp143I	GATC	4 cut(s)	13, 151, 224, 244
BspACI	CCGC	2 cut(s)	261, 457
BspANI	GGCC	4 cut(s)	128, 281, 372, 541
BspCNI	CTCAG	1 cut(s)	206
BspEI	TCCGGA	1 cut(s)	443
BspFNI	CGCG	2 cut(s)	238, 324
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	301
BspT107I	GGYRCC	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	4 cut(s)	81, 268, 283, 531
BssMI	GATC	4 cut(s)	13, 151, 224, 244
BssT1I	CCWWGG	2 cut(s)	283, 531
Bst2UI	CCWGG	2 cut(s)	117, 270
Bst6I	CTCTTC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	77, 542
BstFNI	CGCG	2 cut(s)	238, 324
BstH2I	RGCGCY	2 cut(s)	71, 442
BstHHI	GCGC	4 cut(s)	70, 238, 441, 513
BstKTI	GATC	4 cut(s)	16, 154, 227, 247
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	13, 151, 224, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	2 cut(s)	117, 270
BstSCI	CCNGG	2 cut(s)	115, 268
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	2 cut(s)	238, 324
BstV1I	GCAGC	2 cut(s)	311, 466
BstXI	CCANNNNNNTGG	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	4 cut(s)	128, 281, 372, 541
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	77, 542
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	4 cut(s)	70, 238, 441, 513
Cfr13I	GGNCC	2 cut(s)	126, 280
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	3 cut(s)	168, 190, 486
CviAII	CATG	2 cut(s)	11, 29
CviQI	GTAC	3 cut(s)	168, 190, 486
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	4 cut(s)	15, 153, 226, 246
DpnII	GATC	4 cut(s)	13, 151, 224, 244
EaeI	YGGCCR	1 cut(s)	539
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	283, 531
Eco24I	GRGCYC	1 cut(s)	362
Eco31I	GGTCTC	1 cut(s)	269
Eco47III	AGCGCT	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	115, 268
EcoT14I	CCWWGG	2 cut(s)	283, 531
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	2 cut(s)	283, 531
FaeI	CATG	2 cut(s)	14, 32
FaiI	YATR	6 cut(s)	12, 30, 165, 210, 388, 390
FatI	CATG	2 cut(s)	10, 28
FauI	CCCGC	1 cut(s)	450
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	3 cut(s)	13, 151, 244
Fnu4HI	GCNGC	2 cut(s)	300, 455
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	300, 455
GlaI	GCGC	4 cut(s)	69, 237, 440, 512
GluI	GCNGC	2 cut(s)	300, 455
HaeII	RGCGCY	2 cut(s)	71, 442
HaeIII	GGCC	4 cut(s)	128, 281, 372, 541
HapII	CCGG	2 cut(s)	341, 444
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	4 cut(s)	70, 238, 441, 513
Hin1II	CATG	2 cut(s)	14, 32
Hin6I	GCGC	4 cut(s)	68, 236, 439, 511
HinP1I	GCGC	4 cut(s)	68, 236, 439, 511
HpaII	CCGG	2 cut(s)	341, 444
Hpy166II	GTNNAC	3 cut(s)	320, 328, 382
Hpy188I	TCNGA	2 cut(s)	18, 548
Hpy188III	TCNNGA	3 cut(s)	11, 308, 444
Hpy8I	GTNNAC	3 cut(s)	320, 328, 382
HpyAV	CCTTC	2 cut(s)	303, 390
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	14, 32
HspAI	GCGC	4 cut(s)	68, 236, 439, 511
Kpn2I	TCCGGA	1 cut(s)	443
KpnI	GGTACC	1 cut(s)	489
Ksp22I	TGATCA	3 cut(s)	13, 151, 244
Kzo9I	GATC	4 cut(s)	13, 151, 224, 244
LmnI	GCTCC	3 cut(s)	51, 201, 446
Lsp1109I	GCAGC	2 cut(s)	311, 466
MalI	GATC	4 cut(s)	15, 153, 226, 246
MboI	GATC	4 cut(s)	13, 151, 224, 244
MboII	GAAGA	2 cut(s)	30, 428
MhlI	GDGCHC	2 cut(s)	362, 467
MluCI	AATT	3 cut(s)	19, 331, 518
MluI	ACGCGT	1 cut(s)	322
MnlI	CCTC	7 cut(s)	42, 209, 337, 344, 349, 473, 517
MroI	TCCGGA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	2 cut(s)	341, 444
MspR9I	CCNGG	2 cut(s)	117, 270
Mva1269I	GAATGC	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	117, 270
MvnI	CGCG	2 cut(s)	238, 324
MwoI	GCNNNNNNNGC	1 cut(s)	258
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	13, 151, 224, 244
NlaIII	CATG	2 cut(s)	14, 32
NlaIV	GGNNCC	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	80
PaeR7I	CTCGAG	1 cut(s)	361
PagI	TCATGA	1 cut(s)	10
PctI	GAATGC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	301, 456
Psp6I	CCWGG	2 cut(s)	115, 268
PspGI	CCWGG	2 cut(s)	115, 268
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	2 cut(s)	126, 280
PspXI	VCTCGAGB	1 cut(s)	361
PstI	CTGCAG	1 cut(s)	301
RsaI	GTAC	3 cut(s)	169, 191, 487
RsaNI	GTAC	3 cut(s)	168, 190, 486
RseI	CAYNNNNRTG	1 cut(s)	80
SatI	GCNGC	2 cut(s)	300, 455
Sau3AI	GATC	4 cut(s)	13, 151, 224, 244
Sau96I	GGNCC	2 cut(s)	126, 280
ScrFI	CCNGG	2 cut(s)	117, 270
SduI	GDGCHC	2 cut(s)	362, 467
SetI	ASST	7 cut(s)	10, 28, 289, 304, 348, 484, 528
SfcI	CTRYAG	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	3 cut(s)	19, 331, 518
SsiI	CCGC	2 cut(s)	261, 457
StyD4I	CCNGG	2 cut(s)	115, 268
StyI	CCWWGG	2 cut(s)	283, 531
TaqI	TCGA	1 cut(s)	362
TasI	AATT	3 cut(s)	19, 331, 518
TseI	GCWGC	2 cut(s)	299, 454
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	2 cut(s)	70, 197
XapI	RAATTY	2 cut(s)	19, 518
XhoI	CTCGAG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.