Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Reverse (-)

9399489 .. 9402255

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031908

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTTCTTCTTCTGCACCTGACGGCTTTAGGTATGATGTCTTTCTTAGTTTCAGAGGGGAGGACACCCGCAAGACTTTTACCAGCCATCTTCTTGCGGCTTTAGATAGGGAGCAAATCAAAACCTACATAGATGACGAACTTAAGAGTGGAGAGGAAATTGAACCTGCCCTTCGTAAAGCAATTGAGGAATCAAAGCTTCCCGTGGTCATTTTGTCACAAAACTATGCTTCTTCCACATGGTGCTTGGATGAACTTGCTCATATTATGGAATGTACAGAAAGAAATAAACAATTGGTTATACCTATTTTTTACGAAGTAGATCCGTCACATGTACGCCACCAGAGGGAGAGCTATGCAGCTGCATTTGCTCGACATGAAGAACATTTCAAGGACAAGGAATCCGAACTAGTTGAGGGAGTTGTCGAAGTTGTCGAAGATAATGTGATGAAGTTGAATCGCGAATGCCCAAGCGATTTGAAGGGCTTGGTTGGAATTGAAAGTCACATTAAGCTATGCATTGCCCCACAAGATGTTGAGTTCAGCTCATCGCTACTTATCAATGAGAAGGAGCTCGACAGATCTGTAGCAGAAGATGAATGCTTCAAGCATGGTCGTCCAGGACATTGGGTCAAAGATTGCCCTTCAGCAGGTAATGAAGGCATGTATGGAAGGAAAATGGGAAGGGAAGCCTACTCATCCTCGGGGTGGAGCAACTATGGGGGAGGAGATAGATCATCTGTGGGAAGAAATGAATGCTTTAAGTGTGGCCGCCCAGGACATTGGCGCCGATATTGCCCTTATGCAGCTGATCAGGAAAAGCATGGACGCGACCATGTGGGAGGGGAGGACTTGAACAATGGCTACATTGTTTACTCATATGGTGGAAGGAGAAGCCCTTACTGGGAAAATGTCTGCTTCAAGTGTGGGTGGCCCGGACATTGGCAGCATGAGTGTCCTTCAGCAAATGGTGGAGGTGGAAACGACGATGACTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

334

Amino Acids

37.61

Weight (kDa)

5.31

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 133	2.3e-45	TIR domain
TIR_2	PF13676	14 - 124	2e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	175, 641
AccB1I	GGYRCC	1 cut(s)	786
AccII	CGCG	2 cut(s)	462, 831
AciI	CCGC	3 cut(s)	70, 98, 772
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	769
AcuI	CTGAAG	2 cut(s)	630, 945
AcyI	GRCGYC	1 cut(s)	787
AdeI	CACNNNGTG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	277, 336
AfiI	CCNNNNNNNGG	5 cut(s)	346, 650, 708, 904, 942
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	8 cut(s)	164, 391, 457, 481, 500, 607, 856, 922
AhdI	GACNNNNNGTC	1 cut(s)	629
AhlI	ACTAGT	1 cut(s)	409
AjnI	CCWGG	2 cut(s)	619, 775
AluBI	AGCT	7 cut(s)	199, 354, 362, 514, 546, 574, 809
AluI	AGCT	7 cut(s)	199, 354, 362, 514, 546, 574, 809
Alw21I	GWGCWC	1 cut(s)	576
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	703
AoxI	GGCC	2 cut(s)	769, 932
ApeKI	GCWGC	4 cut(s)	359, 362, 806, 946
AspLEI	GCGC	1 cut(s)	789
AspS9I	GGNCC	1 cut(s)	933
AsuC2I	CCSGG	1 cut(s)	936
AvaI	CYCGRG	1 cut(s)	703
BanI	GGYRCC	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	4 cut(s)	349, 371, 818, 958
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	2 cut(s)	621, 777
BclI	TGATCA	1 cut(s)	811
BcnI	CCSGG	1 cut(s)	936
BcuI	ACTAGT	1 cut(s)	409
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	790
BfrI	CTTAAG	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	175, 641
BglII	AGATCT	1 cut(s)	581
BisI	GCNGC	6 cut(s)	99, 360, 363, 772, 807, 947
BlsI	GCNGC	6 cut(s)	100, 361, 364, 773, 808, 948
Bme1390I	CCNGG	3 cut(s)	621, 777, 936
BmeRI	GACNNNNNGTC	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	933
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	3 cut(s)	621, 777, 936
BmrI	ACTGGG	1 cut(s)	913
BmuI	ACTGGG	1 cut(s)	913
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpuMI	CCSGG	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	787
BsaJI	CCNNGG	3 cut(s)	204, 702, 775
Bsc4I	CCNNNNNNNGG	5 cut(s)	346, 650, 708, 904, 942
Bse1I	ACTGG	1 cut(s)	908
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	621, 777
BseDI	CCNNGG	3 cut(s)	204, 702, 775
BseGI	GGATG	2 cut(s)	256, 698
BseLI	CCNNNNNNNGG	5 cut(s)	346, 650, 708, 904, 942
BseMI	GCAATG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	908
BseRI	GAGGAG	1 cut(s)	741
BseXI	GCAGC	4 cut(s)	349, 371, 818, 958
Bsh1236I	CGCG	2 cut(s)	462, 831
BshFI	GGCC	2 cut(s)	771, 934
BshNI	GGYRCC	1 cut(s)	786
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	703
BsiSI	CCGG	1 cut(s)	936
BslI	CCNNNNNNNGG	5 cut(s)	346, 650, 708, 904, 942
BsmI	GAATGC	3 cut(s)	470, 605, 761
BsnI	GGCC	2 cut(s)	771, 934
BsoBI	CYCGRG	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp1407I	TGTACA	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	322, 581, 734, 811
Bsp68I	TCGCGA	1 cut(s)	462
BspACI	CCGC	3 cut(s)	70, 98, 772
BspANI	GGCC	2 cut(s)	771, 934
BspFNI	CGCG	2 cut(s)	462, 831
BspLI	GGNNCC	1 cut(s)	788
BspMI	ACCTGC	2 cut(s)	175, 641
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	786
BspTI	CTTAAG	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	908
BssECI	CCNNGG	3 cut(s)	204, 702, 775
BssMI	GATC	4 cut(s)	322, 581, 734, 811
BssNI	GRCGYC	1 cut(s)	787
Bst2UI	CCWGG	2 cut(s)	621, 777
BstACI	GRCGYC	1 cut(s)	787
BstAFI	CTTAAG	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	648
BstF5I	GGATG	2 cut(s)	256, 698
BstFNI	CGCG	2 cut(s)	462, 831
BstH2I	RGCGCY	1 cut(s)	790
BstHHI	GCGC	1 cut(s)	789
BstKTI	GATC	4 cut(s)	325, 584, 737, 814
BstMBI	GATC	4 cut(s)	322, 581, 734, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 795
BstNI	CCWGG	2 cut(s)	621, 777
BstNSI	RCATGY	2 cut(s)	335, 667
BstSCI	CCNGG	3 cut(s)	619, 775, 934
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	2 cut(s)	462, 831
BstV1I	GCAGC	4 cut(s)	349, 371, 818, 958
BstX2I	RGATCY	2 cut(s)	322, 581
BstXI	CCANNNNNNTGG	2 cut(s)	627, 783
BstYI	RGATCY	2 cut(s)	322, 581
BsuRI	GGCC	2 cut(s)	771, 934
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	256, 698
BtuMI	TCGCGA	1 cut(s)	462
BveI	ACCTGC	2 cut(s)	175, 641
CfoI	GCGC	1 cut(s)	789
Cfr13I	GGNCC	1 cut(s)	933
CseI	GACGC	1 cut(s)	837
Csp6I	GTAC	2 cut(s)	276, 335
CviAII	CATG	8 cut(s)	240, 332, 377, 611, 664, 824, 836, 950
CviQI	GTAC	2 cut(s)	276, 335
DdeI	CTNAG	1 cut(s)	47
DinI	GGCGCC	1 cut(s)	788
DpnI	GATC	4 cut(s)	324, 583, 736, 813
DpnII	GATC	4 cut(s)	322, 581, 734, 811
DraIII	CACNNNGTG	1 cut(s)	243
DriI	GACNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	769
Eam1105I	GACNNNNNGTC	1 cut(s)	629
Ecl136II	GAGCTC	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	630, 945
Eco88I	CYCGRG	1 cut(s)	703
EcoICRI	GAGCTC	1 cut(s)	574
EcoNI	CCTNNNNNAGG	1 cut(s)	648
EcoRII	CCWGG	2 cut(s)	619, 775
EcoT22I	ATGCAT	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	576
EgeI	GGCGCC	1 cut(s)	788
EheI	GGCGCC	1 cut(s)	788
FaeI	CATG	8 cut(s)	243, 335, 380, 614, 667, 827, 839, 953
FatI	CATG	8 cut(s)	239, 331, 376, 610, 663, 823, 835, 949
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	880
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	6 cut(s)	99, 360, 363, 772, 807, 947
FokI	GGATG	2 cut(s)	263, 685
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	6 cut(s)	99, 360, 363, 772, 807, 947
FspBI	CTAG	1 cut(s)	410
GlaI	GCGC	1 cut(s)	788
GluI	GCNGC	6 cut(s)	99, 360, 363, 772, 807, 947
HaeII	RGCGCY	1 cut(s)	790
HaeIII	GGCC	2 cut(s)	771, 934
HapII	CCGG	1 cut(s)	936
HgaI	GACGC	1 cut(s)	837
HhaI	GCGC	1 cut(s)	789
Hin1I	GRCGYC	1 cut(s)	787
Hin1II	CATG	8 cut(s)	243, 335, 380, 614, 667, 827, 839, 953
Hin6I	GCGC	1 cut(s)	787
HinP1I	GCGC	1 cut(s)	787
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	191, 401, 457, 992
HpaII	CCGG	1 cut(s)	936
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	3 cut(s)	56, 406, 997
Hpy188III	TCNNGA	2 cut(s)	461, 815
Hpy8I	GTNNAC	1 cut(s)	874
Hpy99I	CGWCG	1 cut(s)	989
HpyAV	CCTTC	9 cut(s)	182, 475, 562, 653, 654, 666, 678, 882, 969
HpyCH4V	TGCA	5 cut(s)	17, 359, 365, 519, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 795
HpyF3I	CTNAG	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	787
Hsp92II	CATG	8 cut(s)	243, 335, 380, 614, 667, 827, 839, 953
HspAI	GCGC	1 cut(s)	787
KasI	GGCGCC	1 cut(s)	786
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	4 cut(s)	322, 581, 734, 811
LmnI	GCTCC	3 cut(s)	112, 571, 711
Lsp1109I	GCAGC	4 cut(s)	349, 371, 818, 958
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	3 cut(s)	216, 327, 503
MalI	GATC	4 cut(s)	324, 583, 736, 813
MboI	GATC	4 cut(s)	322, 581, 734, 811
MboII	GAAGA	7 cut(s)	3, 83, 225, 392, 449, 605, 759
MfeI	CAATTG	2 cut(s)	183, 293
MflI	RGATCY	2 cut(s)	322, 581
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	4 cut(s)	159, 183, 293, 495
Mly113I	GGCGCC	1 cut(s)	787
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	1 cut(s)	472
Mph1103I	ATGCAT	1 cut(s)	521
MseI	TTAA	3 cut(s)	144, 510, 762
MspA1I	CMGCKG	2 cut(s)	362, 809
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	1 cut(s)	936
MspR9I	CCNGG	3 cut(s)	621, 777, 936
MunI	CAATTG	2 cut(s)	183, 293
Mva1269I	GAATGC	3 cut(s)	470, 605, 761
MvaI	CCWGG	2 cut(s)	621, 777
MvnI	CGCG	2 cut(s)	462, 831
MwoI	GCNNNNNNNGC	2 cut(s)	368, 795
NarI	GGCGCC	1 cut(s)	787
NciI	CCSGG	1 cut(s)	936
NdeI	CATATG	1 cut(s)	880
NdeII	GATC	4 cut(s)	322, 581, 734, 811
NlaIII	CATG	8 cut(s)	243, 335, 380, 614, 667, 827, 839, 953
NlaIV	GGNNCC	1 cut(s)	788
NmuCI	GTSAC	3 cut(s)	216, 327, 503
NruI	TCGCGA	1 cut(s)	462
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	2 cut(s)	335, 667
PciI	ACATGT	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	3 cut(s)	470, 605, 761
PfeI	GAWTC	3 cut(s)	191, 401, 457
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	6 cut(s)	100, 361, 364, 773, 808, 948
PleI	GAGTC	1 cut(s)	986
PluTI	GGCGCC	1 cut(s)	790
PpsI	GAGTC	1 cut(s)	986
PscI	ACATGT	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	2 cut(s)	619, 775
PspGI	CCWGG	2 cut(s)	619, 775
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	1 cut(s)	933
PsrI	GAACNNNNNNTAC	2 cut(s)	848, 880
PsuI	RGATCY	2 cut(s)	322, 581
PvuII	CAGCTG	2 cut(s)	362, 809
RruI	TCGCGA	1 cut(s)	462
RsaI	GTAC	2 cut(s)	277, 336
RsaNI	GTAC	2 cut(s)	276, 335
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	3 cut(s)	144, 510, 762
SatI	GCNGC	6 cut(s)	99, 360, 363, 772, 807, 947
Sau3AI	GATC	4 cut(s)	322, 581, 734, 811
Sau96I	GGNCC	1 cut(s)	933
SchI	GAGTC	1 cut(s)	986
ScrFI	CCNGG	3 cut(s)	621, 777, 936
SduI	GDGCHC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	585
SfoI	GGCGCC	1 cut(s)	788
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	1 cut(s)	409
Sse9I	AATT	4 cut(s)	159, 183, 293, 495
SsiI	CCGC	3 cut(s)	70, 98, 772
SspDI	GGCGCC	1 cut(s)	786
SspMI	CTAG	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	3 cut(s)	619, 775, 934
TaqI	TCGA	4 cut(s)	373, 426, 435, 576
TasI	AATT	4 cut(s)	159, 183, 293, 495
TatI	WGTACW	1 cut(s)	275
TauI	GCSGC	2 cut(s)	101, 774
TfiI	GAWTC	3 cut(s)	191, 401, 457
Tru1I	TTAA	3 cut(s)	144, 510, 762
Tru9I	TTAA	3 cut(s)	144, 510, 762
TseFI	GTSAC	3 cut(s)	216, 327, 503
TseI	GCWGC	4 cut(s)	359, 362, 806, 946
Tsp45I	GTSAC	3 cut(s)	216, 327, 503
TspDTI	ATGAA	6 cut(s)	267, 393, 464, 612, 672, 768
TspGWI	ACGGA	1 cut(s)	315
Vha464I	CTTAAG	1 cut(s)	143
XagI	CCTNNNNNAGG	1 cut(s)	648
XceI	RCATGY	2 cut(s)	335, 667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.