Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Forward (+)

86098775 .. 86099437

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGAGCTTCATTGATGTGGACTCTGTGATGTTATTCATTTCCCTTGGTATCTTTATTGTTTTCTTTAGTTCACCTCATGGCTACTCTTCTGGTGGGAGGAGAAACTATGGCAAAGAGCTTAAAACATCTATAGCACAAAATGAATGCTTCAAGTGTCGTCGTCCAGGACATCGGGCCAAAGACTGCCCTTTAGCAGGTGATCAAGACATGTATGGAAGGAAAATGGGAAGGGCATCCTTGGGTTGGAGCAACTATGGGGGAGGAGATAGTTCATCTATGGGGAGAAATGAATGCTTCAAGTGTGGCCGCCCAGGACATTGGGCACGAGATTGCCCTTCTGCAACTGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGACGACACAAACAATGACTACATTGTTTACTCATATGGTGGAAGGAGAAGCACTTACTGGGAAGATGACTGCTTCAAGTGTGGGCGCTCCGGACATTGGCAGCGAGAGTGCCCTTCGTCAAATGGTGGAGGTGGAAACGATATTGGCAGTGATGGAAAGCGCAGAGAAATTGAGGTATGCTTGGGATGGCCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

193

Amino Acids

21.31

Weight (kDa)

8.02

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	49 - 64	1.9e-06	Zinc knuckle
zf-CCHC	PF00098	98 - 114	9.5e-09	Zinc knuckle
zf-CCHC	PF00098	152 - 167	1.5e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	2 cut(s)	310, 377
AcoI	YGGCCR	2 cut(s)	307, 572
AfiI	CCNNNNNNNGG	3 cut(s)	197, 246, 480
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	154, 301, 460
AjnI	CCWGG	2 cut(s)	166, 313
AluBI	AGCT	2 cut(s)	9, 121
AluI	AGCT	2 cut(s)	9, 121
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	3 cut(s)	177, 307, 572
ApeKI	GCWGC	1 cut(s)	484
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	471, 546
AspS9I	GGNCC	1 cut(s)	177
AsuHPI	GGTGA	2 cut(s)	66, 212
BaeGI	GKGCMC	2 cut(s)	328, 497
BauI	CACGAG	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	2 cut(s)	530, 564
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	2 cut(s)	168, 315
BclI	TGATCA	2 cut(s)	202, 349
BfmI	CTRYAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	472
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	310, 485
BlsI	GCNGC	2 cut(s)	311, 486
Bme1390I	CCNGG	2 cut(s)	168, 315
BmgT120I	GGNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	168, 315
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	451
BsaJI	CCNNGG	3 cut(s)	46, 240, 313
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 246, 480
Bse1I	ACTGG	1 cut(s)	446
BseAI	TCCGGA	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	168, 315
BseDI	CCNNGG	3 cut(s)	46, 240, 313
BseGI	GGATG	2 cut(s)	236, 575
BseLI	CCNNNNNNNGG	3 cut(s)	197, 246, 480
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	2 cut(s)	115, 279
BseSI	GKGCMC	2 cut(s)	328, 497
BseXI	GCAGC	1 cut(s)	496
BshFI	GGCC	3 cut(s)	179, 309, 574
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	197, 246, 480
BsmFI	GGGAC	1 cut(s)	398
BsmI	GAATGC	2 cut(s)	152, 299
BsnI	GGCC	3 cut(s)	179, 309, 574
Bsp1286I	GDGCHC	2 cut(s)	328, 497
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	202, 349
BspACI	CCGC	2 cut(s)	310, 377
BspANI	GGCC	3 cut(s)	179, 309, 574
BspEI	TCCGGA	1 cut(s)	473
BspMI	ACCTGC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	3 cut(s)	46, 240, 313
BssMI	GATC	2 cut(s)	202, 349
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	46, 240
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	168, 315
Bst6I	CTCTTC	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	236, 575
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	2 cut(s)	471, 546
BstKTI	GATC	2 cut(s)	205, 352
BstMBI	GATC	2 cut(s)	202, 349
BstNI	CCWGG	2 cut(s)	168, 315
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	166, 313
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	328, 497
BstV1I	GCAGC	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	179, 309, 574
BtsCI	GGATG	2 cut(s)	236, 575
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	538
BveI	ACCTGC	1 cut(s)	188
CfoI	GCGC	2 cut(s)	471, 546
Cfr13I	GGNCC	1 cut(s)	177
CviAII	CATG	3 cut(s)	80, 211, 362
CviJI	RGCY	6 cut(s)	9, 84, 121, 179, 309, 574
CviKI_1	RGCY	6 cut(s)	9, 84, 121, 179, 309, 574
DpnI	GATC	2 cut(s)	204, 351
DpnII	GATC	2 cut(s)	202, 349
EaeI	YGGCCR	2 cut(s)	307, 572
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	46, 240
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	166, 313
EcoT14I	CCWWGG	2 cut(s)	46, 240
EcoT22I	ATGCAT	1 cut(s)	363
ErhI	CCWWGG	2 cut(s)	46, 240
FaeI	CATG	3 cut(s)	83, 214, 365
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	3 cut(s)	79, 210, 361
FauI	CCCGC	1 cut(s)	370
FauNDI	CATATG	1 cut(s)	418
FbaI	TGATCA	2 cut(s)	202, 349
Fnu4HI	GCNGC	2 cut(s)	310, 485
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	310, 485
GlaI	GCGC	2 cut(s)	470, 545
GluI	GCNGC	2 cut(s)	310, 485
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	3 cut(s)	179, 309, 574
HapII	CCGG	1 cut(s)	474
HhaI	GCGC	2 cut(s)	471, 546
Hin1II	CATG	3 cut(s)	83, 214, 365
Hin6I	GCGC	2 cut(s)	469, 544
HinP1I	GCGC	2 cut(s)	469, 544
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	66, 212
Hpy166II	GTNNAC	3 cut(s)	22, 74, 412
Hpy188III	TCNNGA	3 cut(s)	206, 353, 474
Hpy8I	GTNNAC	3 cut(s)	22, 74, 412
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	5 cut(s)	213, 225, 348, 420, 507
HpyCH4V	TGCA	2 cut(s)	344, 361
Hsp92II	CATG	3 cut(s)	83, 214, 365
HspAI	GCGC	2 cut(s)	469, 544
Kpn2I	TCCGGA	1 cut(s)	473
Ksp22I	TGATCA	2 cut(s)	202, 349
Kzo9I	GATC	2 cut(s)	202, 349
LmnI	GCTCC	2 cut(s)	249, 476
LpnPI	CCDG	9 cut(s)	78, 153, 180, 183, 300, 327, 338, 427, 487
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	245
MalI	GATC	2 cut(s)	204, 351
MboI	GATC	2 cut(s)	202, 349
MboII	GAAGA	3 cut(s)	16, 81, 458
MhlI	GDGCHC	2 cut(s)	328, 497
MluCI	AATT	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	6 cut(s)	87, 93, 257, 374, 506, 550
Mph1103I	ATGCAT	1 cut(s)	363
MroI	TCCGGA	1 cut(s)	473
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	2 cut(s)	17, 366
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	168, 315
Mva1269I	GAATGC	2 cut(s)	152, 299
MvaI	CCWGG	2 cut(s)	168, 315
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	202, 349
NlaIII	CATG	3 cut(s)	83, 214, 365
NsiI	ATGCAT	1 cut(s)	363
NspI	RCATGY	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	188
PciI	ACATGT	1 cut(s)	210
PctI	GAATGC	2 cut(s)	152, 299
PdmI	GAANNNNTTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	311, 486
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	166, 313
PspGI	CCWGG	2 cut(s)	166, 313
PspPI	GGNCC	1 cut(s)	177
RseI	CAYNNNNRTG	2 cut(s)	17, 366
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	310, 485
Sau3AI	GATC	2 cut(s)	202, 349
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	168, 315
SduI	GDGCHC	2 cut(s)	328, 497
SetI	ASST	6 cut(s)	11, 79, 123, 202, 517, 561
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	17, 366
Sse9I	AATT	1 cut(s)	552
SsiI	CCGC	2 cut(s)	310, 377
StyD4I	CCNGG	2 cut(s)	166, 313
StyI	CCWWGG	2 cut(s)	46, 240
TasI	AATT	1 cut(s)	552
TauI	GCSGC	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	538
TseI	GCWGC	1 cut(s)	484
TspDTI	ATGAA	5 cut(s)	17, 28, 159, 264, 306
TspRI	CASTG	1 cut(s)	538
XagI	CCTNNNNNAGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.