Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Reverse (-)

8042254 .. 8042628

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG091300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAATGCTTCAGGTGCGGTCGTCCAGGACATTGGGCCAAAGATTGCCTTTCAGCAGGTGATCAGGACATGTATGGAAGGAAAATGGGAAGGGAAGCCTAGTCATCCTCGGGTTGGAGCAACTATGGGGAAGGAGATAGATCATCTGTGGGGAGAAATGAATGCTTCAAGTGCGGCCGCCCAGGACATTGGGCCCGAGATTGCCCTTCTGCAACTGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGACGATTCAAACACTGACTACATTGTTTACTCATATGGTGGAAGGAGAAGCCCTCGAACATTGGCAGCAAAAGTGCCCTTCATCAGCAATTGGTGGAGGTGGAAATGACGATGACTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

5.12

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	46
AciI	CCGC	4 cut(s)	17, 173, 177, 244
AcoI	YGGCCR	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	168, 260
AjnI	CCWGG	2 cut(s)	24, 180
Ama87I	CYCGRG	2 cut(s)	108, 194
AoxI	GGCC	3 cut(s)	35, 174, 191
ApaI	GGGCCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	316
AspS9I	GGNCC	3 cut(s)	35, 191, 192
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	2 cut(s)	108, 194
BaeGI	GKGCMC	2 cut(s)	195, 329
BanII	GRGCYC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	328
BciT130I	CCWGG	2 cut(s)	26, 182
BclI	TGATCA	2 cut(s)	60, 216
BfaI	CTAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	46
BisI	GCNGC	3 cut(s)	174, 177, 317
BlsI	GCNGC	3 cut(s)	175, 178, 318
Bme1390I	CCNGG	2 cut(s)	26, 182
BmeT110I	CYCGRG	2 cut(s)	108, 194
BmgT120I	GGNCC	3 cut(s)	35, 191, 192
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	26, 182
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BsaJI	CCNNGG	2 cut(s)	107, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	26, 182
BseDI	CCNNGG	2 cut(s)	107, 180
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseSI	GKGCMC	2 cut(s)	195, 329
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	328
Bsh1285I	CGRYCG	2 cut(s)	21, 177
BshFI	GGCC	3 cut(s)	37, 176, 193
BsiEI	CGRYCG	2 cut(s)	21, 177
BsiHKCI	CYCGRG	2 cut(s)	108, 194
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	2 cut(s)	10, 166
BsnI	GGCC	3 cut(s)	37, 176, 193
BsoBI	CYCGRG	2 cut(s)	108, 194
Bsp120I	GGGCCC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	195, 329
Bsp143I	GATC	3 cut(s)	60, 139, 216
BspACI	CCGC	4 cut(s)	17, 173, 177, 244
BspANI	GGCC	3 cut(s)	37, 176, 193
BspLI	GGNNCC	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	107, 180
BssMI	GATC	3 cut(s)	60, 139, 216
Bst2UI	CCWGG	2 cut(s)	26, 182
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	3 cut(s)	63, 142, 219
BstMBI	GATC	3 cut(s)	60, 139, 216
BstMCI	CGRYCG	2 cut(s)	21, 177
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 170
BstNI	CCWGG	2 cut(s)	26, 182
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	24, 180
BstSLI	GKGCMC	2 cut(s)	195, 329
BstV1I	GCAGC	1 cut(s)	328
BstXI	CCANNNNNNTGG	2 cut(s)	32, 188
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	37, 176, 193
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	46
CciNI	GCGGCCGC	1 cut(s)	174
Cfr13I	GGNCC	3 cut(s)	35, 191, 192
CviAII	CATG	2 cut(s)	69, 229
CviJI	RGCY	5 cut(s)	37, 97, 176, 193, 302
CviKI_1	RGCY	5 cut(s)	37, 97, 176, 193, 302
DpnI	GATC	3 cut(s)	62, 141, 218
DpnII	GATC	3 cut(s)	60, 139, 216
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EclXI	CGGCCG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	195
Eco52I	CGGCCG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	108, 194
EcoRII	CCWGG	2 cut(s)	24, 180
EcoT22I	ATGCAT	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	2 cut(s)	72, 232
FaiI	YATR	6 cut(s)	70, 74, 125, 230, 285, 287
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	68, 228
FauI	CCCGC	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	285
FbaI	TGATCA	2 cut(s)	60, 216
Fnu4HI	GCNGC	3 cut(s)	174, 177, 317
FokI	GGATG	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	174, 177, 317
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	3 cut(s)	174, 177, 317
HaeIII	GGCC	3 cut(s)	37, 176, 193
Hin1II	CATG	2 cut(s)	72, 232
HinfI	GANTC	2 cut(s)	256, 365
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	279
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	64, 220
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	6 cut(s)	71, 83, 124, 215, 287, 339
HpyCH4V	TGCA	2 cut(s)	211, 228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 170
Hsp92II	CATG	2 cut(s)	72, 232
Ksp22I	TGATCA	2 cut(s)	60, 216
Kzo9I	GATC	3 cut(s)	60, 139, 216
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	7 cut(s)	11, 38, 41, 49, 167, 194, 205
Lsp1109I	GCAGC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	99
MalI	GATC	3 cut(s)	62, 141, 218
MboI	GATC	3 cut(s)	60, 139, 216
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	195, 329
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	117, 241, 314, 341
Mph1103I	ATGCAT	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	26, 182
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	10, 166
MvaI	CCWGG	2 cut(s)	26, 182
MwoI	GCNNNNNNNGC	2 cut(s)	14, 170
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	3 cut(s)	60, 139, 216
NlaIII	CATG	2 cut(s)	72, 232
NlaIV	GGNNCC	1 cut(s)	193
NotI	GCGGCCGC	1 cut(s)	174
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	46
PciI	ACATGT	1 cut(s)	68
PctI	GAATGC	2 cut(s)	10, 166
PfeI	GAWTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	175, 178, 318
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	24, 180
PspGI	CCWGG	2 cut(s)	24, 180
PspN4I	GGNNCC	1 cut(s)	193
PspOMI	GGGCCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	35, 191, 192
RseI	CAYNNNNRTG	1 cut(s)	233
SatI	GCNGC	3 cut(s)	174, 177, 317
Sau3AI	GATC	3 cut(s)	60, 139, 216
Sau96I	GGNCC	3 cut(s)	35, 191, 192
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	26, 182
SduI	GDGCHC	2 cut(s)	195, 329
SetI	ASST	3 cut(s)	16, 60, 352
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	4 cut(s)	17, 173, 177, 244
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	24, 180
TaqI	TCGA	1 cut(s)	306
TasI	AATT	1 cut(s)	339
TauI	GCSGC	2 cut(s)	176, 179
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	17, 173, 321
TspRI	CASTG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	72
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.