Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Reverse (-)

8046499 .. 8046867

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG091400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAAGGAAAATGGGAAGGGCATCCTTGGGTTGGAGCAACTATGGGGGAGGAGATAGTTCATCTATGGGGAGAAATGAATGCTTCAAGTGTGGCCGCCCAGGACATTGGGCACGAGATTGCCCTTCCTCCAACTGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGACGACTCAAACAATGACTACATTGTTTACTCATATGGTGGAAGGAGAAGCACTTACTGGGAAGATGACTGCTTCAAGTGTGGGCGCTCCGGACATTGGCAGCGAGAGTGCCCTTCGTCAAATGGTGGAGGTGGAAACGATAATGGCAGTGATGGAAAGCGCAGAGAAATTGAGGTATGCTTGGGATGGCCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

122

Amino Acids

13.37

Weight (kDa)

4.64

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	81 - 96	7.7e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	260
AciI	CCGC	2 cut(s)	96, 164
AcoI	YGGCCR	2 cut(s)	93, 359
AfiI	CCNNNNNNNGG	2 cut(s)	32, 267
AgsI	TTSAA	2 cut(s)	87, 247
AjnI	CCWGG	1 cut(s)	99
Aor13HI	TCCGGA	1 cut(s)	260
AoxI	GGCC	2 cut(s)	93, 359
ApeKI	GCWGC	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	258, 333
BaeGI	GKGCMC	2 cut(s)	114, 284
BauI	CACGAG	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	317, 351
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	101
BclI	TGATCA	1 cut(s)	136
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	2 cut(s)	96, 272
BlsI	GCNGC	2 cut(s)	97, 273
Bme1390I	CCNGG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	26, 99
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 267
Bse1I	ACTGG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	26, 99
BseGI	GGATG	2 cut(s)	22, 362
BseLI	CCNNNNNNNGG	2 cut(s)	32, 267
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	114, 284
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	2 cut(s)	95, 361
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	32, 267
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	95, 361
Bsp1286I	GDGCHC	2 cut(s)	114, 284
Bsp13I	TCCGGA	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	2 cut(s)	96, 164
BspANI	GGCC	2 cut(s)	95, 361
BspEI	TCCGGA	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	26, 99
BssMI	GATC	1 cut(s)	136
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	22, 362
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	258, 333
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	2 cut(s)	114, 284
BstV1I	GCAGC	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	95, 361
BtsCI	GGATG	2 cut(s)	22, 362
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	325
CfoI	GCGC	2 cut(s)	258, 333
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	2 cut(s)	95, 361
CviKI_1	RGCY	2 cut(s)	95, 361
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EaeI	YGGCCR	2 cut(s)	93, 359
Eco130I	CCWWGG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	26
EcoT22I	ATGCAT	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	152
FaiI	YATR	6 cut(s)	44, 67, 150, 205, 207, 349
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	148
FauI	CCCGC	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	96, 272
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	96, 272
GlaI	GCGC	2 cut(s)	257, 332
GluI	GCNGC	2 cut(s)	96, 272
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	95, 361
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	2 cut(s)	258, 333
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	2 cut(s)	256, 331
HinP1I	GCGC	2 cut(s)	256, 331
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	261
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	140, 261
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	4 cut(s)	11, 134, 207, 294
HpyCH4V	TGCA	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	2 cut(s)	256, 331
Kpn2I	TCCGGA	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	35, 263
LpnPI	CCDG	5 cut(s)	86, 113, 125, 214, 274
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	1 cut(s)	31
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	2 cut(s)	114, 284
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	2 cut(s)	13, 155
MnlI	CCTC	5 cut(s)	43, 138, 161, 293, 337
Mph1103I	ATGCAT	1 cut(s)	150
MroI	TCCGGA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	153
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	152
NsiI	ATGCAT	1 cut(s)	150
PctI	GAATGC	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	97, 273
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	2 cut(s)	96, 272
Sau3AI	GATC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	114, 284
SetI	ASST	2 cut(s)	304, 348
SfaNI	GCATC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	96, 164
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	26
TasI	AATT	1 cut(s)	339
TauI	GCSGC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	50, 92
TspRI	CASTG	1 cut(s)	325
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.