Glycine-rich RNA-binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g06761 |
| rosa_chinensis | RchiOBHm_Chr5g0012371 |
| rosa_laevigata | RLG00000031908 RLG00000031909 |
| rosa_roxburghii | Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760 |
| rosa_rugosa | Rorug05G0000700 Rorug05G0000700 Rorug07G0346600 |
| rosa_samantha | Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800 |
| rosa_wichuraiana | Rw5G008310 Rw7G042340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 149 |
| Acc36I | ACCTGC | 1 cut(s) | 149 |
| AciI | CCGC | 3 cut(s) | 242, 271, 338 |
| AcoI | YGGCCR | 1 cut(s) | 268 |
| AcsI | RAATTY | 1 cut(s) | 9 |
| AcuI | CTGAAG | 2 cut(s) | 138, 444 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 158, 207, 403, 441 |
| AflIII | ACRYGT | 1 cut(s) | 171 |
| AgsI | TTSAA | 3 cut(s) | 115, 262, 421 |
| AjnI | CCWGG | 3 cut(s) | 40, 127, 274 |
| AluBI | AGCT | 1 cut(s) | 82 |
| AluI | AGCT | 1 cut(s) | 82 |
| Ama87I | CYCGRG | 1 cut(s) | 202 |
| AoxI | GGCC | 3 cut(s) | 138, 268, 431 |
| ApeKI | GCWGC | 1 cut(s) | 445 |
| ApoI | RAATTY | 1 cut(s) | 9 |
| AspS9I | GGNCC | 2 cut(s) | 138, 432 |
| AsuC2I | CCSGG | 1 cut(s) | 435 |
| AsuHPI | GGTGA | 2 cut(s) | 27, 173 |
| AvaI | CYCGRG | 1 cut(s) | 202 |
| BaeGI | GKGCMC | 2 cut(s) | 289, 458 |
| BauI | CACGAG | 1 cut(s) | 288 |
| BbvI | GCAGC | 1 cut(s) | 457 |
| BciT130I | CCWGG | 3 cut(s) | 42, 129, 276 |
| BclI | TGATCA | 2 cut(s) | 163, 310 |
| BcnI | CCSGG | 1 cut(s) | 435 |
| BfmI | CTRYAG | 1 cut(s) | 93 |
| BfuAI | ACCTGC | 1 cut(s) | 149 |
| BisI | GCNGC | 2 cut(s) | 271, 446 |
| BlsI | GCNGC | 2 cut(s) | 272, 447 |
| Bme1390I | CCNGG | 4 cut(s) | 42, 129, 276, 435 |
| BmeT110I | CYCGRG | 1 cut(s) | 202 |
| BmgT120I | GGNCC | 2 cut(s) | 138, 432 |
| BmrFI | CCNGG | 4 cut(s) | 42, 129, 276, 435 |
| BmrI | ACTGGG | 1 cut(s) | 412 |
| BmsI | GCATC | 1 cut(s) | 206 |
| BmuI | ACTGGG | 1 cut(s) | 412 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 22, 54 |
| BpuMI | CCSGG | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 2 cut(s) | 201, 274 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 158, 207, 403, 441 |
| Bse1I | ACTGG | 1 cut(s) | 407 |
| BseBI | CCWGG | 3 cut(s) | 42, 129, 276 |
| BseDI | CCNNGG | 2 cut(s) | 201, 274 |
| BseGI | GGATG | 1 cut(s) | 197 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 158, 207, 403, 441 |
| BseNI | ACTGG | 1 cut(s) | 407 |
| BseRI | GAGGAG | 2 cut(s) | 76, 240 |
| BseSI | GKGCMC | 2 cut(s) | 289, 458 |
| BseXI | GCAGC | 1 cut(s) | 457 |
| BshFI | GGCC | 3 cut(s) | 140, 270, 433 |
| BsiHKCI | CYCGRG | 1 cut(s) | 202 |
| BsiSI | CCGG | 1 cut(s) | 435 |
| BslFI | GGGAC | 1 cut(s) | 359 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 158, 207, 403, 441 |
| BsmFI | GGGAC | 1 cut(s) | 359 |
| BsmI | GAATGC | 2 cut(s) | 113, 260 |
| BsnI | GGCC | 3 cut(s) | 140, 270, 433 |
| BsoBI | CYCGRG | 1 cut(s) | 202 |
| Bsp1286I | GDGCHC | 2 cut(s) | 289, 458 |
| Bsp143I | GATC | 2 cut(s) | 163, 310 |
| BspACI | CCGC | 3 cut(s) | 242, 271, 338 |
| BspANI | GGCC | 3 cut(s) | 140, 270, 433 |
| BspMI | ACCTGC | 1 cut(s) | 149 |
| BsrI | ACTGG | 1 cut(s) | 407 |
| BssECI | CCNNGG | 2 cut(s) | 201, 274 |
| BssMI | GATC | 2 cut(s) | 163, 310 |
| BssSI | CACGAG | 1 cut(s) | 288 |
| Bst2BI | CACGAG | 1 cut(s) | 288 |
| Bst2UI | CCWGG | 3 cut(s) | 42, 129, 276 |
| Bst6I | CTCTTC | 1 cut(s) | 55 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 156 |
| BstF5I | GGATG | 1 cut(s) | 197 |
| BstKTI | GATC | 2 cut(s) | 166, 313 |
| BstMBI | GATC | 2 cut(s) | 163, 310 |
| BstNI | CCWGG | 3 cut(s) | 42, 129, 276 |
| BstNSI | RCATGY | 1 cut(s) | 175 |
| BstSCI | CCNGG | 4 cut(s) | 40, 127, 274, 433 |
| BstSFI | CTRYAG | 1 cut(s) | 93 |
| BstSLI | GKGCMC | 2 cut(s) | 289, 458 |
| BstV1I | GCAGC | 1 cut(s) | 457 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 135, 282 |
| BsuRI | GGCC | 3 cut(s) | 140, 270, 433 |
| BtsCI | GGATG | 1 cut(s) | 197 |
| BveI | ACCTGC | 1 cut(s) | 149 |
| Cfr13I | GGNCC | 2 cut(s) | 138, 432 |
| CviAII | CATG | 3 cut(s) | 172, 323, 449 |
| CviJI | RGCY | 6 cut(s) | 45, 82, 140, 270, 396, 433 |
| CviKI_1 | RGCY | 6 cut(s) | 45, 82, 140, 270, 396, 433 |
| DpnI | GATC | 2 cut(s) | 165, 312 |
| DpnII | GATC | 2 cut(s) | 163, 310 |
| EaeI | YGGCCR | 1 cut(s) | 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 55 |
| EarI | CTCTTC | 1 cut(s) | 55 |
| Eco57I | CTGAAG | 2 cut(s) | 138, 444 |
| Eco88I | CYCGRG | 1 cut(s) | 202 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 156 |
| EcoRII | CCWGG | 3 cut(s) | 40, 127, 274 |
| EcoT22I | ATGCAT | 1 cut(s) | 324 |
| FaeI | CATG | 3 cut(s) | 175, 326, 452 |
| FaiI | YATR | 7 cut(s) | 173, 177, 219, 324, 379, 381, 450 |
| FaqI | GGGAC | 1 cut(s) | 359 |
| FatI | CATG | 3 cut(s) | 171, 322, 448 |
| FauI | CCCGC | 2 cut(s) | 235, 331 |
| FauNDI | CATATG | 1 cut(s) | 379 |
| FbaI | TGATCA | 2 cut(s) | 163, 310 |
| Fnu4HI | GCNGC | 2 cut(s) | 271, 446 |
| FokI | GGATG | 1 cut(s) | 184 |
| Fsp4HI | GCNGC | 2 cut(s) | 271, 446 |
| GluI | GCNGC | 2 cut(s) | 271, 446 |
| HaeIII | GGCC | 3 cut(s) | 140, 270, 433 |
| HapII | CCGG | 1 cut(s) | 435 |
| Hin1II | CATG | 3 cut(s) | 175, 326, 452 |
| HinfI | GANTC | 2 cut(s) | 350, 491 |
| HpaII | CCGG | 1 cut(s) | 435 |
| HphI | GGTGA | 2 cut(s) | 27, 173 |
| Hpy166II | GTNNAC | 2 cut(s) | 35, 373 |
| Hpy188I | TCNGA | 2 cut(s) | 30, 496 |
| Hpy188III | TCNNGA | 2 cut(s) | 167, 314 |
| Hpy8I | GTNNAC | 2 cut(s) | 35, 373 |
| Hpy99I | CGWCG | 1 cut(s) | 488 |
| HpyAV | CCTTC | 5 cut(s) | 162, 186, 309, 381, 468 |
| HpyCH4V | TGCA | 2 cut(s) | 305, 322 |
| Hsp92II | CATG | 3 cut(s) | 175, 326, 452 |
| Ksp22I | TGATCA | 2 cut(s) | 163, 310 |
| Kzo9I | GATC | 2 cut(s) | 163, 310 |
| LmnI | GCTCC | 1 cut(s) | 210 |
| Lsp1109I | GCAGC | 1 cut(s) | 457 |
| LweI | GCATC | 1 cut(s) | 206 |
| MalI | GATC | 2 cut(s) | 165, 312 |
| MboI | GATC | 2 cut(s) | 163, 310 |
| MboII | GAAGA | 1 cut(s) | 42 |
| MhlI | GDGCHC | 2 cut(s) | 289, 458 |
| MluCI | AATT | 1 cut(s) | 9 |
| MlyI | GAGTC | 2 cut(s) | 344, 485 |
| MmeI | TCCRAC | 1 cut(s) | 188 |
| MnlI | CCTC | 6 cut(s) | 48, 54, 211, 218, 335, 467 |
| Mph1103I | ATGCAT | 1 cut(s) | 324 |
| MseI | TTAA | 1 cut(s) | 84 |
| MslI | CAYNNNNRTG | 1 cut(s) | 327 |
| MspI | CCGG | 1 cut(s) | 435 |
| MspR9I | CCNGG | 4 cut(s) | 42, 129, 276, 435 |
| Mva1269I | GAATGC | 2 cut(s) | 113, 260 |
| MvaI | CCWGG | 3 cut(s) | 42, 129, 276 |
| NciI | CCSGG | 1 cut(s) | 435 |
| NdeI | CATATG | 1 cut(s) | 379 |
| NdeII | GATC | 2 cut(s) | 163, 310 |
| NlaIII | CATG | 3 cut(s) | 175, 326, 452 |
| NsiI | ATGCAT | 1 cut(s) | 324 |
| NspI | RCATGY | 1 cut(s) | 175 |
| PaqCI | CACCTGC | 1 cut(s) | 149 |
| PciI | ACATGT | 1 cut(s) | 171 |
| PctI | GAATGC | 2 cut(s) | 113, 260 |
| PfoI | TCCNGGA | 1 cut(s) | 127 |
| PkrI | GCNGC | 2 cut(s) | 272, 447 |
| PleI | GAGTC | 2 cut(s) | 344, 485 |
| PpsI | GAGTC | 2 cut(s) | 344, 485 |
| PscI | ACATGT | 1 cut(s) | 171 |
| Psp6I | CCWGG | 3 cut(s) | 40, 127, 274 |
| PspGI | CCWGG | 3 cut(s) | 40, 127, 274 |
| PspPI | GGNCC | 2 cut(s) | 138, 432 |
| RseI | CAYNNNNRTG | 1 cut(s) | 327 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 2 cut(s) | 271, 446 |
| Sau3AI | GATC | 2 cut(s) | 163, 310 |
| Sau96I | GGNCC | 2 cut(s) | 138, 432 |
| SchI | GAGTC | 2 cut(s) | 344, 485 |
| ScrFI | CCNGG | 4 cut(s) | 42, 129, 276, 435 |
| SduI | GDGCHC | 2 cut(s) | 289, 458 |
| SetI | ASST | 4 cut(s) | 40, 84, 163, 478 |
| SfaNI | GCATC | 1 cut(s) | 206 |
| SfcI | CTRYAG | 1 cut(s) | 93 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 327 |
| Sse9I | AATT | 1 cut(s) | 9 |
| SsiI | CCGC | 3 cut(s) | 242, 271, 338 |
| StyD4I | CCNGG | 4 cut(s) | 40, 127, 274, 433 |
| TasI | AATT | 1 cut(s) | 9 |
| TauI | GCSGC | 1 cut(s) | 273 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TseI | GCWGC | 1 cut(s) | 445 |
| TspDTI | ATGAA | 3 cut(s) | 120, 225, 267 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 156 |
| XapI | RAATTY | 1 cut(s) | 9 |
| XceI | RCATGY | 1 cut(s) | 175 |
| Zsp2I | ATGCAT | 1 cut(s) | 324 |