Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Reverse (-)

8700561 .. 8708103

Gene Structure 7543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATCGTTCTCAGCTTGATTCATCAAGTCTGGGGTGGTCGCTTGGCTAGTTCACCTCCTGGCTACTCTTCTAGTGGGAGGAGAAACTATGGCAAAGAGCTTAAAACATCTGTAGCACAAAATGAATGCTTCAAGTGTGGTCGTCCAGGACATTGGGCCAAATATTTCCCTTCAGCAGGTCATGATCAAGACATGTATGTAAGGAAAATGGGAAGGGCATCCTCGGGTTGGAGCAACTATGGGGGAGGAGATAGTTCATCTGTGGGGAGAAATGAATGCTTCAAGTGTGGCCGCCCAGGACAGTGGCCACGAGATTACCCTTCTGCAACTGATCAGGAAATGCATGGAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

118

Amino Acids

12.99

Weight (kDa)

9.18

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	289, 305
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	176, 228
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	133, 283
AjnI	CCWGG	3 cut(s)	58, 145, 295
AluBI	AGCT	2 cut(s)	15, 100
AluI	AGCT	2 cut(s)	15, 100
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	3 cut(s)	156, 289, 305
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	307
BauI	CACGAG	1 cut(s)	309
BciT130I	CCWGG	3 cut(s)	60, 147, 297
BclI	TGATCA	2 cut(s)	184, 331
BfaI	CTAG	2 cut(s)	48, 72
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	3 cut(s)	60, 147, 297
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	60, 147, 297
BmsI	GCATC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	222, 295
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 228
BseBI	CCWGG	3 cut(s)	60, 147, 297
BseDI	CCNNGG	2 cut(s)	222, 295
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	176, 228
BseMII	CTCAG	1 cut(s)	25
BseRI	GAGGAG	2 cut(s)	94, 261
BshFI	GGCC	3 cut(s)	158, 291, 307
BsiHKCI	CYCGRG	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	176, 228
BsmI	GAATGC	2 cut(s)	131, 281
BsnI	GGCC	3 cut(s)	158, 291, 307
BsoBI	CYCGRG	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	3, 184, 331
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	3 cut(s)	158, 291, 307
BspCNI	CTCAG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	222, 295
BssMI	GATC	3 cut(s)	3, 184, 331
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	3 cut(s)	60, 147, 297
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	11
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	3 cut(s)	6, 187, 334
BstMBI	GATC	3 cut(s)	3, 184, 331
BstNI	CCWGG	3 cut(s)	60, 147, 297
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	58, 145, 295
BstSFI	CTRYAG	1 cut(s)	111
BstXI	CCANNNNNNTGG	2 cut(s)	153, 303
BsuRI	GGCC	3 cut(s)	158, 291, 307
BtsCI	GGATG	1 cut(s)	218
BtsIMutI	CAGTG	1 cut(s)	308
BveI	ACCTGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	156
CviAII	CATG	3 cut(s)	182, 193, 344
CviJI	RGCY	7 cut(s)	15, 47, 63, 100, 158, 291, 307
CviKI_1	RGCY	7 cut(s)	15, 47, 63, 100, 158, 291, 307
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	5, 186, 333
DpnII	GATC	3 cut(s)	3, 184, 331
EaeI	YGGCCR	2 cut(s)	289, 305
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	174
EcoRII	CCWGG	3 cut(s)	58, 145, 295
EcoT22I	ATGCAT	1 cut(s)	345
FaeI	CATG	3 cut(s)	185, 196, 347
FaiI	YATR	6 cut(s)	90, 183, 194, 198, 240, 345
FatI	CATG	3 cut(s)	181, 192, 343
FbaI	TGATCA	2 cut(s)	184, 331
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	2 cut(s)	48, 72
GluI	GCNGC	1 cut(s)	292
HaeIII	GGCC	3 cut(s)	158, 291, 307
Hin1II	CATG	3 cut(s)	185, 196, 347
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	53
Hpy188III	TCNNGA	3 cut(s)	182, 188, 335
Hpy8I	GTNNAC	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	180, 207, 330
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4V	TGCA	2 cut(s)	326, 343
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	185, 196, 347
Ksp22I	TGATCA	2 cut(s)	184, 331
Kzo9I	GATC	3 cut(s)	3, 184, 331
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	16, 45, 72, 132, 159, 162, 282, 309, 320
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	48, 72
MalI	GATC	3 cut(s)	5, 186, 333
MboI	GATC	3 cut(s)	3, 184, 331
MboII	GAAGA	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	307
MluNI	TGGCCA	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	4 cut(s)	66, 72, 232, 239
Mox20I	TGGCCA	1 cut(s)	307
Mph1103I	ATGCAT	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	2 cut(s)	102, 355
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	307
MspR9I	CCNGG	3 cut(s)	60, 147, 297
Mva1269I	GAATGC	2 cut(s)	131, 281
MvaI	CCWGG	3 cut(s)	60, 147, 297
NdeII	GATC	3 cut(s)	3, 184, 331
NlaIII	CATG	3 cut(s)	185, 196, 347
NsiI	ATGCAT	1 cut(s)	345
NspI	RCATGY	1 cut(s)	196
PagI	TCATGA	1 cut(s)	181
PciI	ACATGT	1 cut(s)	192
PctI	GAATGC	2 cut(s)	131, 281
PfeI	GAWTC	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	293
PscI	ACATGT	1 cut(s)	192
Psp6I	CCWGG	3 cut(s)	58, 145, 295
PspGI	CCWGG	3 cut(s)	58, 145, 295
PspPI	GGNCC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	102, 355
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	3 cut(s)	3, 184, 331
Sau96I	GGNCC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	60, 147, 297
SetI	ASST	4 cut(s)	17, 58, 102, 181
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	348
SsiI	CCGC	1 cut(s)	292
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	2 cut(s)	48, 72
StyD4I	CCNGG	3 cut(s)	58, 145, 295
TaaI	ACNGT	1 cut(s)	303
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	102, 355
Tru9I	TTAA	2 cut(s)	102, 355
TscAI	CASTG	1 cut(s)	308
TspDTI	ATGAA	4 cut(s)	11, 138, 246, 288
TspRI	CASTG	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	174
XceI	RCATGY	1 cut(s)	196
XspI	CTAG	2 cut(s)	48, 72
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.