Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Forward (+)

65975240 .. 65976357

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGAGACATGAGAAGACCTTTTATAGTTCAGCTCATGGCTACTCTTCTGGTGGGAGTAGAAACTCTGGCAAAGAGCTTAAAACATTTGTAGAACAAAATGAATGCTTCAAGTGTGATCGTCCAGGATATTGGGCCAAAGATTGCCCTTCAGCAGGTGATCAAGACATGTATGGAAGGAAAATGGGAACGGAAGCCTACTCATCCTCGGGTTGGAGCAACTATGGGGGAGGAGATGGATCATCTGTGGGGAGAAATGAATGCTTCGAGTACGACCGCCCAGGACATTGGGCCCGATATTGCCCCTCTGCAAATGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGATGACTCAAACAATGACTACATTGTTTACTCATATGGTGGAAGGAGAAGCCCTTACTGGGAAGATGACTGCTTCAAGTGGGGGCGCTCCGGACGTTGGCAGCAAGAGTGCCCTAAAGCAAATGGTGGAGGTGGAAACGATAATGGCAGTGATGGAAAGCACAGAGAAATTGAGGTATGCTTGGGATGGCCGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

5.74

Isoelectric Point (pI)

65.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	440
AciI	CCGC	2 cut(s)	277, 344
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	4 cut(s)	155, 213, 409, 447
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	112, 427
AjnI	CCWGG	2 cut(s)	124, 280
AluBI	AGCT	2 cut(s)	35, 79
AluI	AGCT	2 cut(s)	35, 79
AlwI	GGATC	1 cut(s)	247
Ama87I	CYCGRG	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	440
AoxI	GGCC	3 cut(s)	135, 291, 539
ApaI	GGGCCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	135, 291, 292
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	208
BaeGI	GKGCMC	2 cut(s)	295, 464
BanII	GRGCYC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	230, 497, 531
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	2 cut(s)	126, 282
BclI	TGATCA	2 cut(s)	160, 316
BfoI	RGCGCY	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	2 cut(s)	126, 282
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	135, 291, 292
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	126, 282
BmrI	ACTGGG	1 cut(s)	418
BmuI	ACTGGG	1 cut(s)	418
BpiI	GAAGAC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	207, 280
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 213, 409, 447
Bse1I	ACTGG	1 cut(s)	413
BseAI	TCCGGA	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	126, 282
BseDI	CCNNGG	2 cut(s)	207, 280
BseGI	GGATG	3 cut(s)	203, 358, 542
BseLI	CCNNNNNNNGG	4 cut(s)	155, 213, 409, 447
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	246
BseSI	GKGCMC	2 cut(s)	295, 464
BseXI	GCAGC	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	3 cut(s)	137, 293, 541
BsiEI	CGRYCG	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	441
BslI	CCNNNNNNNGG	4 cut(s)	155, 213, 409, 447
BsmI	GAATGC	2 cut(s)	110, 266
BsnI	GGCC	3 cut(s)	137, 293, 541
BsoBI	CYCGRG	1 cut(s)	208
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	295, 464
Bsp13I	TCCGGA	1 cut(s)	440
Bsp143I	GATC	4 cut(s)	118, 160, 239, 316
BspACI	CCGC	2 cut(s)	277, 344
BspANI	GGCC	3 cut(s)	137, 293, 541
BspEI	TCCGGA	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	207, 280
BssMI	GATC	4 cut(s)	118, 160, 239, 316
Bst2UI	CCWGG	2 cut(s)	126, 282
Bst6I	CTCTTC	1 cut(s)	52
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	203, 358, 542
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	4 cut(s)	121, 163, 242, 319
BstMBI	GATC	4 cut(s)	118, 160, 239, 316
BstMCI	CGRYCG	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	126, 282
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	2 cut(s)	124, 280
BstSLI	GKGCMC	2 cut(s)	295, 464
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	23
BstXI	CCANNNNNNTGG	2 cut(s)	132, 288
BsuRI	GGCC	3 cut(s)	137, 293, 541
BtsCI	GGATG	3 cut(s)	203, 358, 542
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	135, 291, 292
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	4 cut(s)	11, 38, 169, 329
CviJI	RGCY	8 cut(s)	35, 42, 79, 137, 197, 293, 402, 541
CviKI_1	RGCY	8 cut(s)	35, 42, 79, 137, 197, 293, 402, 541
CviQI	GTAC	1 cut(s)	271
DpnI	GATC	4 cut(s)	120, 162, 241, 318
DpnII	GATC	4 cut(s)	118, 160, 239, 316
EaeI	YGGCCR	1 cut(s)	539
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	124, 280
EcoT22I	ATGCAT	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	4 cut(s)	14, 41, 172, 332
FatI	CATG	4 cut(s)	10, 37, 168, 328
FauI	CCCGC	1 cut(s)	337
FauNDI	CATATG	1 cut(s)	385
FbaI	TGATCA	2 cut(s)	160, 316
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	2 cut(s)	190, 365
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	452
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	137, 293, 541
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	14, 41, 172, 332
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	3 cut(s)	164, 320, 441
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	3 cut(s)	159, 171, 387
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	2 cut(s)	311, 328
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	4 cut(s)	14, 41, 172, 332
HspAI	GCGC	1 cut(s)	436
Kpn2I	TCCGGA	1 cut(s)	440
Ksp22I	TGATCA	2 cut(s)	160, 316
Kzo9I	GATC	4 cut(s)	118, 160, 239, 316
LmnI	GCTCC	2 cut(s)	216, 443
Lsp1109I	GCAGC	1 cut(s)	463
MaeII	ACGT	1 cut(s)	445
MalI	GATC	4 cut(s)	120, 162, 241, 318
MboI	GATC	4 cut(s)	118, 160, 239, 316
MboII	GAAGA	4 cut(s)	16, 28, 39, 425
MhlI	GDGCHC	2 cut(s)	295, 464
MluCI	AATT	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	6 cut(s)	217, 224, 316, 341, 473, 517
Mph1103I	ATGCAT	1 cut(s)	330
MroI	TCCGGA	1 cut(s)	440
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	126, 282
Mva1269I	GAATGC	2 cut(s)	110, 266
MvaI	CCWGG	2 cut(s)	126, 282
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	4 cut(s)	118, 160, 239, 316
NlaIII	CATG	4 cut(s)	14, 41, 172, 332
NlaIV	GGNNCC	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	330
NspI	RCATGY	1 cut(s)	172
PaqCI	CACCTGC	1 cut(s)	146
PciI	ACATGT	1 cut(s)	168
PctI	GAATGC	2 cut(s)	110, 266
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PscI	ACATGT	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	124, 280
PspGI	CCWGG	2 cut(s)	124, 280
PspN4I	GGNNCC	1 cut(s)	293
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	135, 291, 292
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	4 cut(s)	118, 160, 239, 316
Sau96I	GGNCC	3 cut(s)	135, 291, 292
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	126, 282
SduI	GDGCHC	2 cut(s)	295, 464
SetI	ASST	7 cut(s)	23, 37, 81, 160, 448, 484, 528
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	1 cut(s)	519
SsiI	CCGC	2 cut(s)	277, 344
StyD4I	CCNGG	2 cut(s)	124, 280
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	519
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	17, 117, 273
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.