Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013632

Physical Location & Seq

Genomic Coordinates Forward (+)

86100433 .. 86104038

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00064290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAAGTTGAATCGCGAATGCTCAAGCAATTTGAAGGGCTTGGTTGGAATTGAAAGTCACATTAAGCTATGCATTGCCCCACAAGATAGTTCATCCCCTGGCTACTCTTCTGGTGGGAGGAGAAACTATGGCAAAGAGCTTAAAACATCTGTAGCACAAAATGAATGCTTCAAGTGTGGTCGTCCAGGACATCGGGCCAGAGATTGCCCTTCAGCAGGTGATCAAGGCATGTATGTAAGGAAAATGGGAAGGGCATCCTTGGGTTGGAGCAACTATGGGGGAGGAGATAGTTCATCTATGGGGAGAAATGAATGTTTCAAGTGTGGCCGCCCAGGACATTGGGCACGAGATTGCCCTTCTGCAACTGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGACGACTCAAACAATGACTACATTGTTTACTCATGTGGTGGAAGGAGAATCCCTTACTGGGAAAATGTCTGCTTCAAGTGTGGGTGGCCCGGACATTGGCAGCATGAGTGCCCTTCAGCAAATGGTGGAGGTGGAAACGACGATGATTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0033120 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0045935 GO:0048024 GO:0048026 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1901700 GO:1902679 GO:1903311 GO:1903313 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

185

Amino Acids

19.98

Weight (kDa)

7.51

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	55 - 71	5.8e-08	Zinc knuckle
zf-CCHC	PF00098	104 - 120	9e-09	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06761
rosa_chinensis	RchiOBHm_Chr5g0012371
rosa_laevigata	RLG00000031908 RLG00000031909
rosa_roxburghii	Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760
rosa_rugosa	Rorug05G0000700 Rorug05G0000700 Rorug07G0346600
rosa_samantha	Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800
rosa_wichuraiana	Rw5G008310 Rw7G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	206
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	328, 395
AcoI	YGGCCR	1 cut(s)	325
AcuI	CTGAAG	2 cut(s)	195, 501
AfiI	CCNNNNNNNGG	4 cut(s)	215, 264, 460, 498
AgsI	TTSAA	6 cut(s)	10, 34, 53, 172, 319, 478
AjnI	CCWGG	3 cut(s)	97, 184, 331
AluBI	AGCT	2 cut(s)	67, 139
AluI	AGCT	2 cut(s)	67, 139
AoxI	GGCC	3 cut(s)	195, 325, 488
ApeKI	GCWGC	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	195, 489
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	230
BaeGI	GKGCMC	2 cut(s)	346, 515
BauI	CACGAG	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	514
BciT130I	CCWGG	3 cut(s)	99, 186, 333
BclI	TGATCA	2 cut(s)	220, 367
BcnI	CCSGG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	328, 503
BlsI	GCNGC	2 cut(s)	329, 504
Bme1390I	CCNGG	4 cut(s)	99, 186, 333, 492
BmgT120I	GGNCC	2 cut(s)	195, 489
BmrFI	CCNGG	4 cut(s)	99, 186, 333, 492
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	7
BpuMI	CCSGG	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	97, 258, 331
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 264, 460, 498
Bse1I	ACTGG	1 cut(s)	464
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	3 cut(s)	99, 186, 333
BseDI	CCNNGG	3 cut(s)	97, 258, 331
BseGI	GGATG	2 cut(s)	92, 254
BseLI	CCNNNNNNNGG	4 cut(s)	215, 264, 460, 498
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	2 cut(s)	133, 297
BseSI	GKGCMC	2 cut(s)	346, 515
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	197, 327, 490
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	4 cut(s)	215, 264, 460, 498
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	2 cut(s)	23, 170
BsnI	GGCC	3 cut(s)	197, 327, 490
Bsp1286I	GDGCHC	2 cut(s)	346, 515
Bsp143I	GATC	2 cut(s)	220, 367
Bsp68I	TCGCGA	1 cut(s)	15
BspACI	CCGC	2 cut(s)	328, 395
BspANI	GGCC	3 cut(s)	197, 327, 490
BspFNI	CGCG	1 cut(s)	15
BspMI	ACCTGC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	3 cut(s)	97, 258, 331
BssMI	GATC	2 cut(s)	220, 367
BssSI	CACGAG	1 cut(s)	345
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	3 cut(s)	99, 186, 333
Bst6I	CTCTTC	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	92, 254
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	2 cut(s)	223, 370
BstMBI	GATC	2 cut(s)	220, 367
BstNI	CCWGG	3 cut(s)	99, 186, 333
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	4 cut(s)	97, 184, 331, 490
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	2 cut(s)	346, 515
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	197, 327, 490
BtsCI	GGATG	2 cut(s)	92, 254
BtuMI	TCGCGA	1 cut(s)	15
BveI	ACCTGC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	195, 489
CviAII	CATG	4 cut(s)	229, 380, 435, 506
CviJI	RGCY	7 cut(s)	39, 67, 102, 139, 197, 327, 490
CviKI_1	RGCY	7 cut(s)	39, 67, 102, 139, 197, 327, 490
DpnI	GATC	2 cut(s)	222, 369
DpnII	GATC	2 cut(s)	220, 367
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	258
Eco57I	CTGAAG	2 cut(s)	195, 501
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoRII	CCWGG	3 cut(s)	97, 184, 331
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	2 cut(s)	74, 381
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	4 cut(s)	232, 383, 438, 509
FaiI	YATR	9 cut(s)	70, 129, 230, 234, 276, 299, 381, 436, 507
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	228, 379, 434, 505
FauI	CCCGC	1 cut(s)	388
FbaI	TGATCA	2 cut(s)	220, 367
Fnu4HI	GCNGC	2 cut(s)	328, 503
FokI	GGATG	2 cut(s)	79, 241
Fsp4HI	GCNGC	2 cut(s)	328, 503
GluI	GCNGC	2 cut(s)	328, 503
HaeIII	GGCC	3 cut(s)	197, 327, 490
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	4 cut(s)	232, 383, 438, 509
HinfI	GANTC	4 cut(s)	10, 407, 450, 548
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	553
Hpy188III	TCNNGA	2 cut(s)	14, 371
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	6 cut(s)	28, 219, 243, 366, 438, 525
HpyCH4V	TGCA	3 cut(s)	72, 362, 379
Hsp92II	CATG	4 cut(s)	232, 383, 438, 509
Ksp22I	TGATCA	2 cut(s)	220, 367
Kzo9I	GATC	2 cut(s)	220, 367
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	222, 369
MboI	GATC	2 cut(s)	220, 367
MboII	GAAGA	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	346, 515
MluCI	AATT	2 cut(s)	28, 48
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	2 cut(s)	25, 245
MnlI	CCTC	4 cut(s)	111, 275, 392, 524
Mph1103I	ATGCAT	2 cut(s)	74, 381
MseI	TTAA	2 cut(s)	63, 141
MslI	CAYNNNNRTG	1 cut(s)	384
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	4 cut(s)	99, 186, 333, 492
Mva1269I	GAATGC	2 cut(s)	23, 170
MvaI	CCWGG	3 cut(s)	99, 186, 333
MvnI	CGCG	1 cut(s)	15
NciI	CCSGG	1 cut(s)	492
NdeII	GATC	2 cut(s)	220, 367
NlaIII	CATG	4 cut(s)	232, 383, 438, 509
NmuCI	GTSAC	1 cut(s)	56
NruI	TCGCGA	1 cut(s)	15
NsiI	ATGCAT	2 cut(s)	74, 381
NspI	RCATGY	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	206
PctI	GAATGC	2 cut(s)	23, 170
PfeI	GAWTC	3 cut(s)	10, 450, 548
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	329, 504
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp6I	CCWGG	3 cut(s)	97, 184, 331
PspGI	CCWGG	3 cut(s)	97, 184, 331
PspPI	GGNCC	2 cut(s)	195, 489
RruI	TCGCGA	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	63, 141
SatI	GCNGC	2 cut(s)	328, 503
Sau3AI	GATC	2 cut(s)	220, 367
Sau96I	GGNCC	2 cut(s)	195, 489
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	4 cut(s)	99, 186, 333, 492
SduI	GDGCHC	2 cut(s)	346, 515
SetI	ASST	4 cut(s)	69, 141, 220, 535
SfaNI	GCATC	1 cut(s)	263
SfcI	CTRYAG	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	28, 48
SsiI	CCGC	2 cut(s)	328, 395
StyD4I	CCNGG	4 cut(s)	97, 184, 331, 490
StyI	CCWWGG	1 cut(s)	258
TasI	AATT	2 cut(s)	28, 48
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	10, 450, 548
Tru1I	TTAA	2 cut(s)	63, 141
Tru9I	TTAA	2 cut(s)	63, 141
TseFI	GTSAC	1 cut(s)	56
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	56
TspDTI	ATGAA	5 cut(s)	17, 81, 177, 282, 324
XagI	CCTNNNNNAGG	1 cut(s)	213
XceI	RCATGY	1 cut(s)	232
Zsp2I	ATGCAT	2 cut(s)	74, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.