Zinc knuckle
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g06761 |
| rosa_chinensis | RchiOBHm_Chr5g0012371 |
| rosa_laevigata | RLG00000031908 RLG00000031909 |
| rosa_roxburghii | Rroxscaffold_1G00064280 Rroxscaffold_1G00064290 Rroxscaffold_3G00218760 |
| rosa_rugosa | Rorug05G0000700 Rorug05G0000700 Rorug07G0346600 |
| rosa_samantha | Rh5AG095000 Rh5AG095100 Rh5BG091300 Rh5BG091400 Rh5CG104300 Rh5DG090800 |
| rosa_wichuraiana | Rw5G008310 Rw7G042340 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 234 |
| AccIII | TCCGGA | 1 cut(s) | 122 |
| AciI | CCGC | 3 cut(s) | 31, 91, 103 |
| AcsI | RAATTY | 1 cut(s) | 186 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AgsI | TTSAA | 2 cut(s) | 109, 192 |
| AluBI | AGCT | 1 cut(s) | 250 |
| AluI | AGCT | 1 cut(s) | 250 |
| Aor13HI | TCCGGA | 1 cut(s) | 122 |
| ApeKI | GCWGC | 1 cut(s) | 133 |
| ApoI | RAATTY | 1 cut(s) | 186 |
| AspLEI | GCGC | 2 cut(s) | 120, 182 |
| BaeGI | GKGCMC | 1 cut(s) | 146 |
| BbvI | GCAGC | 1 cut(s) | 145 |
| BfoI | RGCGCY | 2 cut(s) | 121, 183 |
| BisI | GCNGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 1 cut(s) | 135 |
| BsaWI | WCCGGW | 1 cut(s) | 122 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 239 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseAI | TCCGGA | 1 cut(s) | 122 |
| BseGI | GGATG | 1 cut(s) | 45 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseSI | GKGCMC | 1 cut(s) | 146 |
| BseXI | GCAGC | 1 cut(s) | 145 |
| BsiSI | CCGG | 1 cut(s) | 123 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| Bsp1286I | GDGCHC | 1 cut(s) | 146 |
| Bsp13I | TCCGGA | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspACI | CCGC | 3 cut(s) | 31, 91, 103 |
| BspEI | TCCGGA | 1 cut(s) | 122 |
| BssMI | GATC | 1 cut(s) | 3 |
| BstF5I | GGATG | 1 cut(s) | 45 |
| BstH2I | RGCGCY | 2 cut(s) | 121, 183 |
| BstHHI | GCGC | 2 cut(s) | 120, 182 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstSLI | GKGCMC | 1 cut(s) | 146 |
| BstV1I | GCAGC | 1 cut(s) | 145 |
| BtsCI | GGATG | 1 cut(s) | 45 |
| CfoI | GCGC | 2 cut(s) | 120, 182 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 2 cut(s) | 85, 250 |
| CviKI_1 | RGCY | 2 cut(s) | 85, 250 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| EcoT22I | ATGCAT | 1 cut(s) | 17 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 4 cut(s) | 17, 68, 70, 254 |
| FatI | CATG | 1 cut(s) | 15 |
| FauI | CCCGC | 2 cut(s) | 24, 84 |
| FauNDI | CATATG | 1 cut(s) | 68 |
| FblI | GTMKAC | 1 cut(s) | 234 |
| Fnu4HI | GCNGC | 1 cut(s) | 134 |
| FokI | GGATG | 1 cut(s) | 52 |
| Fsp4HI | GCNGC | 1 cut(s) | 134 |
| GlaI | GCGC | 2 cut(s) | 119, 181 |
| GluI | GCNGC | 1 cut(s) | 134 |
| HaeII | RGCGCY | 2 cut(s) | 121, 183 |
| HapII | CCGG | 1 cut(s) | 123 |
| HhaI | GCGC | 2 cut(s) | 120, 182 |
| Hin1II | CATG | 1 cut(s) | 19 |
| Hin6I | GCGC | 2 cut(s) | 118, 180 |
| HinP1I | GCGC | 2 cut(s) | 118, 180 |
| HinfI | GANTC | 2 cut(s) | 43, 221 |
| HpaII | CCGG | 1 cut(s) | 123 |
| Hpy166II | GTNNAC | 1 cut(s) | 235 |
| Hpy188I | TCNGA | 1 cut(s) | 226 |
| Hpy188III | TCNNGA | 2 cut(s) | 7, 123 |
| Hpy8I | GTNNAC | 1 cut(s) | 235 |
| HpyAV | CCTTC | 1 cut(s) | 70 |
| HpyCH4V | TGCA | 2 cut(s) | 15, 212 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| HspAI | GCGC | 2 cut(s) | 118, 180 |
| Kpn2I | TCCGGA | 1 cut(s) | 122 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LmnI | GCTCC | 2 cut(s) | 125, 247 |
| LpnPI | CCDG | 1 cut(s) | 136 |
| Lsp1109I | GCAGC | 1 cut(s) | 145 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 1 cut(s) | 107 |
| MhlI | GDGCHC | 1 cut(s) | 146 |
| MluCI | AATT | 1 cut(s) | 186 |
| MlyI | GAGTC | 1 cut(s) | 37 |
| MmeI | TCCRAC | 1 cut(s) | 249 |
| MnlI | CCTC | 3 cut(s) | 28, 155, 238 |
| Mph1103I | ATGCAT | 1 cut(s) | 17 |
| MroI | TCCGGA | 1 cut(s) | 122 |
| MslI | CAYNNNNRTG | 1 cut(s) | 20 |
| MspI | CCGG | 1 cut(s) | 123 |
| NdeI | CATATG | 1 cut(s) | 68 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 1 cut(s) | 19 |
| NsiI | ATGCAT | 1 cut(s) | 17 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 1 cut(s) | 135 |
| PleI | GAGTC | 1 cut(s) | 37 |
| PpsI | GAGTC | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 1 cut(s) | 20 |
| SatI | GCNGC | 1 cut(s) | 134 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| SchI | GAGTC | 1 cut(s) | 37 |
| SduI | GDGCHC | 1 cut(s) | 146 |
| SetI | ASST | 2 cut(s) | 166, 252 |
| SgeI | CNNG | 9 cut(s) | 19, 28, 40, 44, 100, 104, 121, 135, 149 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 20 |
| Sse9I | AATT | 1 cut(s) | 186 |
| SsiI | CCGC | 3 cut(s) | 31, 91, 103 |
| TasI | AATT | 1 cut(s) | 186 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| TseI | GCWGC | 1 cut(s) | 133 |
| TspDTI | ATGAA | 1 cut(s) | 234 |
| XapI | RAATTY | 1 cut(s) | 186 |
| XmiI | GTMKAC | 1 cut(s) | 234 |
| Zsp2I | ATGCAT | 1 cut(s) | 17 |