Rh5AG095100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013632
Physical Location & Seq
Reverse (-)
8708161 .. 8710284
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG095100.1

Sequence Viewer

Length: 447 bp
ATGAATGCTTCAAGTGTGGTCGTCCAGGACATTGGGCCAAAGATTGCCCTTCAGCAGGTCATGATCAAGACATGTATGGAAGGAAAATGGGAAGGGCACCCTTGGGTTGGTGCAACTATGGGGGAGGACATAGTTCATCTGTGGGGAGAAATGAATGCTTCAAGTGTGGCCGCCCAGGACATTGGGCACGAGATTGCCCTTCTGCAACTGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGACGACTCAAACAATGACTACATTGTTTACTCATATGGTGGAAGGAGAAGCACTCACTGGGAAGATGACTGCTTCAAGTGTGGGCGCTCCGGACATTGGCAGCAAGAGTGCCCTTCGTCAAATGGTGGAGGTGGAAACGATATTGGCACTGATGGAACGCGCAGAGAAATTGAGGTATGCTTGGGATGGCCGTTTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.28

Weight (kDa)

5.39

Isoelectric Point (pI)

30.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 96
AccII CGCG 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 334
AciI CCGC 2 cut(s) 171, 238
AcoI YGGCCR 2 cut(s) 168, 433
AcuI CTGAAG 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 55, 107, 341
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 4 cut(s) 12, 162, 321, 443
AjnI CCWGG 2 cut(s) 24, 174
Aor13HI TCCGGA 1 cut(s) 334
AoxI GGCC 3 cut(s) 35, 168, 433
ApeKI GCWGC 1 cut(s) 345
AspLEI GCGC 2 cut(s) 332, 407
AspS9I GGNCC 1 cut(s) 35
BaeGI GKGCMC 3 cut(s) 99, 189, 358
BanI GGYRCC 1 cut(s) 96
BauI CACGAG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 357
BccI CCATC 2 cut(s) 391, 425
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 2 cut(s) 26, 176
BclI TGATCA 2 cut(s) 63, 210
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 2 cut(s) 171, 346
BlsI GCNGC 2 cut(s) 172, 347
Bme1390I CCNGG 2 cut(s) 26, 176
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 2 cut(s) 26, 176
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BsaJI CCNNGG 2 cut(s) 101, 174
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 107, 341
Bse1I ACTGG 1 cut(s) 307
BseAI TCCGGA 1 cut(s) 334
BseBI CCWGG 2 cut(s) 26, 176
BseDI CCNNGG 2 cut(s) 101, 174
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 3 cut(s) 55, 107, 341
BseNI ACTGG 1 cut(s) 307
BseSI GKGCMC 3 cut(s) 99, 189, 358
BseXI GCAGC 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 37, 170, 435
BshNI GGYRCC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 259
BslI CCNNNNNNNGG 3 cut(s) 55, 107, 341
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 2 cut(s) 10, 160
BsnI GGCC 3 cut(s) 37, 170, 435
Bsp1286I GDGCHC 3 cut(s) 99, 189, 358
Bsp13I TCCGGA 1 cut(s) 334
Bsp143I GATC 2 cut(s) 63, 210
BspACI CCGC 2 cut(s) 171, 238
BspANI GGCC 3 cut(s) 37, 170, 435
BspEI TCCGGA 1 cut(s) 334
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 98
BspMI ACCTGC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 101, 174
BssMI GATC 2 cut(s) 63, 210
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 101
Bst2BI CACGAG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 26, 176
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 1 cut(s) 405
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 2 cut(s) 332, 407
BstKTI GATC 2 cut(s) 66, 213
BstMBI GATC 2 cut(s) 63, 210
BstNI CCWGG 2 cut(s) 26, 176
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 24, 174
BstSLI GKGCMC 3 cut(s) 99, 189, 358
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 357
BstXI CCANNNNNNTGG 2 cut(s) 32, 182
BsuRI GGCC 3 cut(s) 37, 170, 435
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 300, 392
BveI ACCTGC 1 cut(s) 46
CciI TCATGA 1 cut(s) 60
CfoI GCGC 2 cut(s) 332, 407
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 3 cut(s) 61, 72, 223
CviJI RGCY 3 cut(s) 37, 170, 435
CviKI_1 RGCY 3 cut(s) 37, 170, 435
DpnI GATC 2 cut(s) 65, 212
DpnII GATC 2 cut(s) 63, 210
EaeI YGGCCR 2 cut(s) 168, 433
Eco130I CCWWGG 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 24, 174
EcoT14I CCWWGG 1 cut(s) 101
EcoT22I ATGCAT 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 3 cut(s) 64, 75, 226
FaiI YATR 9 cut(s) 62, 73, 77, 119, 131, 224, 279, 281, 423
FaqI GGGAC 1 cut(s) 259
FatI CATG 3 cut(s) 60, 71, 222
FauI CCCGC 1 cut(s) 231
FauNDI CATATG 1 cut(s) 279
FbaI TGATCA 2 cut(s) 63, 210
Fnu4HI GCNGC 2 cut(s) 171, 346
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 171, 346
GlaI GCGC 2 cut(s) 331, 406
GluI GCNGC 2 cut(s) 171, 346
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 3 cut(s) 37, 170, 435
HapII CCGG 1 cut(s) 335
HhaI GCGC 2 cut(s) 332, 407
Hin1II CATG 3 cut(s) 64, 75, 226
Hin6I GCGC 2 cut(s) 330, 405
HinP1I GCGC 2 cut(s) 330, 405
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 273
Hpy188III TCNNGA 4 cut(s) 61, 67, 214, 335
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 6 cut(s) 59, 74, 86, 209, 281, 368
HpyCH4V TGCA 3 cut(s) 113, 205, 222
Hsp92II CATG 3 cut(s) 64, 75, 226
HspAI GCGC 2 cut(s) 330, 405
Kpn2I TCCGGA 1 cut(s) 334
Ksp22I TGATCA 2 cut(s) 63, 210
Kzo9I GATC 2 cut(s) 63, 210
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 8 cut(s) 11, 38, 41, 161, 188, 199, 288, 348
Lsp1109I GCAGC 1 cut(s) 357
MalI GATC 2 cut(s) 65, 212
MboI GATC 2 cut(s) 63, 210
MboII GAAGA 1 cut(s) 319
MhlI GDGCHC 3 cut(s) 99, 189, 358
MluCI AATT 1 cut(s) 413
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 4 cut(s) 118, 235, 367, 411
Mph1103I ATGCAT 1 cut(s) 224
MroI TCCGGA 1 cut(s) 334
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 2 cut(s) 26, 176
Mva1269I GAATGC 2 cut(s) 10, 160
MvaI CCWGG 2 cut(s) 26, 176
MvnI CGCG 1 cut(s) 405
NdeI CATATG 1 cut(s) 279
NdeII GATC 2 cut(s) 63, 210
NlaIII CATG 3 cut(s) 64, 75, 226
NlaIV GGNNCC 1 cut(s) 98
NsiI ATGCAT 1 cut(s) 224
NspI RCATGY 1 cut(s) 75
PagI TCATGA 1 cut(s) 60
PciI ACATGT 1 cut(s) 71
PctI GAATGC 2 cut(s) 10, 160
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 2 cut(s) 172, 347
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PscI ACATGT 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 24, 174
PspGI CCWGG 2 cut(s) 24, 174
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 2 cut(s) 171, 346
Sau3AI GATC 2 cut(s) 63, 210
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 26, 176
SduI GDGCHC 3 cut(s) 99, 189, 358
SetI ASST 3 cut(s) 60, 378, 422
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 1 cut(s) 413
SsiI CCGC 2 cut(s) 171, 238
StyD4I CCNGG 2 cut(s) 24, 174
StyI CCWWGG 1 cut(s) 101
TasI AATT 1 cut(s) 413
TauI GCSGC 1 cut(s) 173
TscAI CASTG 2 cut(s) 307, 399
TseI GCWGC 1 cut(s) 345
TspDTI ATGAA 3 cut(s) 17, 125, 167
TspRI CASTG 2 cut(s) 307, 399
XagI CCTNNNNNAGG 1 cut(s) 53
XceI RCATGY 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.