RLG00000031909

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013632
Physical Location & Seq
Reverse (-)
9402707 .. 9403078
372 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031909

Sequence Viewer

Length: 372 bp
ATGGAAGGAAAACGGGAAGGGCATCCTTGGGTTGGAGCAACTATGGGGGAGGAGATAGTTCATCTGTGGGGAGAAATGAATGCTTCAAGTGTGGCCGCCCAGGAGATTGATCACAAGATTGCCCTTCTGCAACTGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGACTACTCAAACAATGACTACATTGTTTACTCATATGGTGGAAGGAGAAGCACTTACTGGGAAGATGACTGCTTCAAGTGTGGGCGCTCCGGACATTGGCAGCGAGAGTGCCCTTCGTCAAATGGTGGAGGTGGAAATGACAATGGCAGTGATGGAAAGCGCAGAGAAATTGAGGTTTGCTTGGGCTGGCCGTTTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.57

Weight (kDa)

5.23

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 2 cut(s) 96, 163
AcoI YGGCCR 2 cut(s) 93, 358
AfiI CCNNNNNNNGG 2 cut(s) 32, 266
AgsI TTSAA 3 cut(s) 87, 246, 368
AjnI CCWGG 1 cut(s) 99
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 2 cut(s) 93, 358
ApeKI GCWGC 1 cut(s) 270
AspLEI GCGC 2 cut(s) 257, 332
BaeGI GKGCMC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 316
BceAI ACGGC 1 cut(s) 345
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 2 cut(s) 109, 135
BfoI RGCGCY 1 cut(s) 258
BisI GCNGC 2 cut(s) 96, 271
BlsI GCNGC 2 cut(s) 97, 272
Bme1390I CCNGG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 26, 99
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 266
Bse1I ACTGG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 26, 99
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 32, 266
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 2 cut(s) 95, 360
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 32, 266
BsmFI GGGAC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 2 cut(s) 95, 360
Bsp1286I GDGCHC 1 cut(s) 283
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 2 cut(s) 109, 135
BspACI CCGC 2 cut(s) 96, 163
BspANI GGCC 2 cut(s) 95, 360
BspEI TCCGGA 1 cut(s) 259
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 26, 99
BssMI GATC 2 cut(s) 109, 135
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 358
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 2 cut(s) 257, 332
BstKTI GATC 2 cut(s) 112, 138
BstMBI GATC 2 cut(s) 109, 135
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 282
BsuRI GGCC 2 cut(s) 95, 360
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 358
CfoI GCGC 2 cut(s) 257, 332
CviAII CATG 1 cut(s) 148
CviJI RGCY 3 cut(s) 95, 356, 360
CviKI_1 RGCY 3 cut(s) 95, 356, 360
DpnI GATC 2 cut(s) 111, 137
DpnII GATC 2 cut(s) 109, 135
EaeI YGGCCR 2 cut(s) 93, 358
Eco130I CCWWGG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 149
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 1 cut(s) 151
FaiI YATR 4 cut(s) 44, 149, 204, 206
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 156
FauNDI CATATG 1 cut(s) 204
FbaI TGATCA 2 cut(s) 109, 135
Fnu4HI GCNGC 2 cut(s) 96, 271
FokI GGATG 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 96, 271
GlaI GCGC 2 cut(s) 256, 331
GluI GCNGC 2 cut(s) 96, 271
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 2 cut(s) 95, 360
HapII CCGG 1 cut(s) 260
HhaI GCGC 2 cut(s) 257, 332
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 255, 330
HinP1I GCGC 2 cut(s) 255, 330
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 198
Hpy188III TCNNGA 2 cut(s) 139, 260
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 4 cut(s) 11, 134, 206, 293
HpyCH4V TGCA 2 cut(s) 130, 147
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 255, 330
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 2 cut(s) 109, 135
Kzo9I GATC 2 cut(s) 109, 135
LmnI GCTCC 2 cut(s) 35, 262
LpnPI CCDG 6 cut(s) 86, 113, 124, 213, 273, 342
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 1 cut(s) 31
MalI GATC 2 cut(s) 111, 137
MboI GATC 2 cut(s) 109, 135
MboII GAAGA 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 4 cut(s) 43, 160, 292, 336
Mph1103I ATGCAT 1 cut(s) 149
MroI TCCGGA 1 cut(s) 259
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 204
NdeII GATC 2 cut(s) 109, 135
NlaIII CATG 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 149
PctI GAATGC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 97, 272
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 2 cut(s) 96, 271
Sau3AI GATC 2 cut(s) 109, 135
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 283
SetI ASST 2 cut(s) 303, 347
SfaNI GCATC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 1 cut(s) 338
SsiI CCGC 2 cut(s) 96, 163
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 26
TasI AATT 1 cut(s) 338
TauI GCSGC 1 cut(s) 98
TscAI CASTG 1 cut(s) 324
TseI GCWGC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 50, 92
TspRI CASTG 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.