FvH4_3g07280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005526
Physical Location & Seq
Forward (+)
4331605 .. 4332261
657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07280.t1

Sequence Viewer

Length: 330 bp
ATGCACACCTTCGGTCAGAAACCATGTTGCTTCTTCACCATCAAAGTCTTGATTTCTGTCTCAGTTTTGGCAGCCATAACATCAGCAACTAGAACTTACCCGGTGGCTCTTAATGGTCACAGAACAGAAGAGGCTTTAGAGGCGAGTGCTCCAGCTGTGAACAACAGACTGCTGCTGTTAGATATGCAGCACCAGGTCAAGGTGGAAGTGGCTTCTCAGGATCATGCTCATGTTTTATCAAAGCGTCCTAAAATCCCACCTTCTGGTCCAAGCCACAGGACAAACAAGATACCTAATTCCTCAAGACATTTACTAGTAGCTAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.87

Weight (kDa)

9.92

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AclWI GGATC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 199, 263
AhlI ACTAGT 1 cut(s) 313
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 2 cut(s) 155, 320
AluI AGCT 2 cut(s) 155, 320
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 71, 172, 187
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 3 cut(s) 83, 159, 199
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 313
BfaI CTAG 3 cut(s) 90, 314, 321
BisI GCNGC 3 cut(s) 72, 173, 188
BlsI GCNGC 3 cut(s) 73, 174, 189
Bme1390I CCNGG 2 cut(s) 101, 194
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 101, 194
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 263
BseBI CCWGG 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 199, 263
BseMII CTCAG 2 cut(s) 75, 230
BseXI GCAGC 3 cut(s) 83, 159, 199
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 199, 263
BsmAI GTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 220
BspCNI CTCAG 2 cut(s) 74, 229
BspHI TCATGA 1 cut(s) 326
BspPI GGATC 1 cut(s) 228
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 61, 216
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 99, 192
BstV1I GCAGC 3 cut(s) 83, 159, 199
CciI TCATGA 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 266
CseI GACGC 1 cut(s) 233
CsiI ACCWGGT 1 cut(s) 192
CviAII CATG 4 cut(s) 24, 224, 230, 327
CviJI RGCY 7 cut(s) 74, 107, 134, 155, 212, 273, 320
CviKI_1 RGCY 7 cut(s) 74, 107, 134, 155, 212, 273, 320
DdeI CTNAG 2 cut(s) 61, 216
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 27, 227, 233, 330
FaiI YATR 6 cut(s) 25, 77, 185, 225, 231, 328
FatI CATG 4 cut(s) 23, 223, 229, 326
Fnu4HI GCNGC 3 cut(s) 72, 173, 188
Fsp4HI GCNGC 3 cut(s) 72, 173, 188
FspBI CTAG 3 cut(s) 90, 314, 321
GluI GCNGC 3 cut(s) 72, 173, 188
GsuI CTGGAG 1 cut(s) 135
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 233
Hin1II CATG 4 cut(s) 27, 227, 233, 330
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 4 cut(s) 49, 218, 303, 327
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 19, 270
HpyCH4V TGCA 2 cut(s) 4, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 61, 216
Hsp92II CATG 4 cut(s) 27, 227, 233, 330
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 7 cut(s) 114, 165, 179, 203, 206, 249, 262
Lsp1109I GCAGC 3 cut(s) 83, 159, 199
MabI ACCWGGT 1 cut(s) 192
MaeI CTAG 3 cut(s) 90, 314, 321
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 2 cut(s) 25, 140
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 295
MnlI CCTC 3 cut(s) 124, 133, 310
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 2 cut(s) 101, 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 101
NdeII GATC 1 cut(s) 220
NlaIII CATG 4 cut(s) 27, 227, 233, 330
NmuCI GTSAC 1 cut(s) 116
PagI TCATGA 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 3 cut(s) 73, 174, 189
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 3 cut(s) 72, 173, 188
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 266
ScrFI CCNGG 2 cut(s) 101, 194
SduI GDGCHC 1 cut(s) 151
SetI ASST 7 cut(s) 11, 157, 198, 204, 262, 295, 322
SexAI ACCWGGT 1 cut(s) 192
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SpeI ACTAGT 1 cut(s) 313
Sse9I AATT 1 cut(s) 295
SspMI CTAG 3 cut(s) 90, 314, 321
StyD4I CCNGG 2 cut(s) 99, 192
TasI AATT 1 cut(s) 295
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 3 cut(s) 71, 172, 187
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 315
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 266
XspI CTAG 3 cut(s) 90, 314, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.