RchiOBHm_Chr2g0127981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005526
Physical Location & Seq
Reverse (-)
42840346 .. 42843569
3224 bp
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UTR
Exon/CDS
Intron
PRQ49980

Sequence Viewer

Length: 483 bp
ATGAGGAAAAAGCCACAAAGCCAACTACTAATCTGCACAGAACATGATATGCAACAACCTCTTTACTGGTTTGCTGAGCCACCACCTGCGCTCTATCTGCCTTTTTGCCTCTATTCCACTGCTTCATATTTGGTCGACACAGAGAGAGATAGACCAAAGGATACGGGGGGAAGAAGGGAGAGAAGAAGAGGCCCTCCCTTCAAAAGAGAAGACAAGAAGAAGAAGCAGCAAAGAGTCGTCAGGTTGGCGTCAACTCAAAACTTTGAAGATGAAGGAGAAGATAATGTTGACTGGGAAGAAGCTCCAGTTGCAGGATTTTTCCCCTACTCATTTGACAAGGCCTCCTTTCTAATCCATACCCCAGAAACATTGGTATCAGGTGTTCCCAGCGTATTGCGTCGGGTGGTTCCGATACCTCTGCATGTTTCCTCCAGAGAAGGAAAACGAGAAGGAGAACTTACTGCTTTGATCTGCACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.48

Weight (kDa)

8.77

Isoelectric Point (pI)

63.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
Acc36I ACCTGC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 202, 266
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
AoxI GGCC 2 cut(s) 190, 339
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciVI GTATCC 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 94
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 1 cut(s) 227
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 408
BmrI ACTGGG 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 2 cut(s) 288, 415
Bpu1102I GCTNAGC 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 3 cut(s) 71, 296, 305
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 71, 296, 305
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 2 cut(s) 19, 457
BshFI GGCC 2 cut(s) 192, 341
BslI CCNNNNNNNGG 1 cut(s) 311
BsnI GGCC 2 cut(s) 192, 341
Bsp143I GATC 1 cut(s) 468
Bsp1720I GCTNAGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 192, 341
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 408
BspMI ACCTGC 1 cut(s) 94
BsrI ACTGG 3 cut(s) 71, 296, 305
BssMI GATC 1 cut(s) 468
BssNI GRCGYC 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 471
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 2 cut(s) 97, 308
BstNSI RCATGY 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 216
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 2 cut(s) 192, 341
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 117
BveI ACCTGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 2 cut(s) 237, 386
CviAII CATG 2 cut(s) 44, 422
CviJI RGCY 6 cut(s) 13, 21, 79, 192, 302, 341
CviKI_1 RGCY 6 cut(s) 13, 21, 79, 192, 302, 341
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 191
FaeI CATG 2 cut(s) 47, 425
FaiI YATR 5 cut(s) 45, 50, 127, 357, 423
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 441, 473
FatI CATG 2 cut(s) 43, 421
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 227
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 2 cut(s) 288, 415
HaeIII GGCC 2 cut(s) 192, 341
HgaI GACGC 2 cut(s) 237, 386
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 2 cut(s) 47, 425
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 3 cut(s) 136, 252, 289
HindII GTYRAC 3 cut(s) 136, 252, 289
HinfI GANTC 1 cut(s) 234
Hpy166II GTNNAC 3 cut(s) 136, 252, 289
Hpy188I TCNGA 1 cut(s) 411
Hpy188III TCNNGA 1 cut(s) 432
Hpy8I GTNNAC 3 cut(s) 136, 252, 289
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 5 cut(s) 168, 208, 266, 431, 443
HpyCH4V TGCA 5 cut(s) 36, 52, 311, 421, 474
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 308
HpyF3I CTNAG 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 2 cut(s) 47, 425
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 1 cut(s) 238
MalI GATC 1 cut(s) 470
MboI GATC 1 cut(s) 468
MboII GAAGA 9 cut(s) 183, 195, 198, 221, 229, 232, 278, 290, 308
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 7 cut(s) 69, 119, 182, 204, 352, 426, 439
MwoI GCNNNNNNNGC 2 cut(s) 97, 308
NdeII GATC 1 cut(s) 468
NlaIII CATG 2 cut(s) 47, 425
NlaIV GGNNCC 1 cut(s) 408
NspI RCATGY 1 cut(s) 425
PaqCI CACCTGC 1 cut(s) 94
PceI AGGCCT 1 cut(s) 341
PkrI GCNGC 1 cut(s) 228
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 1 cut(s) 191
PsrI GAACNNNNNNTAC 2 cut(s) 366, 398
SalI GTCGAC 1 cut(s) 134
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 243
SetI ASST 6 cut(s) 61, 88, 245, 304, 382, 418
SseBI AGGCCT 1 cut(s) 341
StuI AGGCCT 1 cut(s) 341
TaqI TCGA 1 cut(s) 135
TscAI CASTG 1 cut(s) 124
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 114, 285
TspRI CASTG 1 cut(s) 124
XceI RCATGY 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.