RLG00000031858

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005526
Physical Location & Seq
Reverse (-)
8805698 .. 8807650
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031858

Sequence Viewer

Length: 357 bp
ATGGCTGACCACGTAAAGTCTCATGGAAGAGTGTTCAACACGCATTCAGAAGAAAATCCGAATGCTTATATGTTGCATTGTTCTTTTTTGGCAGCCATAACATCAGCAACTAGAACTTACCCGGTGGCTCCAACTGATCACAGAACACAAGGTCTAGGCGCTTTAGAGATGAGTGCACCAGCTGTGAATAACAGACTGCTGCTGTTAGATTTGCAGCACCAGGTCAAGGTGGAAGTGGCTTCTCAGGATCATGCTCATGTTCTATCAAGGCGTCCTAAAATCCCACCTTCTGGTCCAAGCCACAGGACCAACAAGACACCTAATTCCTCAAGACATTTGCTACTAGCTAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.94

Weight (kDa)

9.74

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AclWI GGATC 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 226, 290
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 2 cut(s) 182, 347
AluI AGCT 2 cut(s) 182, 347
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 24
Alw44I GTGCAC 1 cut(s) 174
AlwI GGATC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 92, 199, 214
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 293, 306
AsuC2I CCSGG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 293, 306
BaeGI GKGCMC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 104, 186, 226
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 4 cut(s) 111, 155, 344, 348
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 3 cut(s) 93, 200, 215
BlsI GCNGC 3 cut(s) 94, 201, 216
Bme1390I CCNGG 2 cut(s) 122, 221
Bme18I GGWCC 2 cut(s) 293, 306
BmgT120I GGNCC 2 cut(s) 293, 306
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 122, 221
BpuEI CTTGAG 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 271
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 290
BseBI CCWGG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 226, 290
BseMII CTCAG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 3 cut(s) 104, 186, 226
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 226, 290
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 2 cut(s) 43, 67
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 136, 247
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 255
BssMI GATC 2 cut(s) 136, 247
BssNI GRCGYC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 2 cut(s) 139, 250
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 2 cut(s) 136, 247
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 120, 219
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 104, 186, 226
CciI TCATGA 1 cut(s) 353
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 293, 306
CseI GACGC 1 cut(s) 260
CsiI ACCWGGT 1 cut(s) 219
CviAII CATG 4 cut(s) 23, 251, 257, 354
CviJI RGCY 7 cut(s) 5, 95, 128, 182, 239, 300, 347
CviKI_1 RGCY 7 cut(s) 5, 95, 128, 182, 239, 300, 347
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 138, 249
DpnII GATC 2 cut(s) 136, 247
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 293, 306
EcoRII CCWGG 1 cut(s) 219
FaeI CATG 4 cut(s) 26, 254, 260, 357
FaiI YATR 7 cut(s) 24, 69, 71, 98, 252, 258, 355
FatI CATG 4 cut(s) 22, 250, 256, 353
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 93, 200, 215
Fsp4HI GCNGC 3 cut(s) 93, 200, 215
FspBI CTAG 4 cut(s) 111, 155, 344, 348
GlaI GCGC 1 cut(s) 160
GluI GCNGC 3 cut(s) 93, 200, 215
HaeII RGCGCY 1 cut(s) 162
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 4 cut(s) 26, 254, 260, 357
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HpaII CCGG 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 49, 60
Hpy188III TCNNGA 3 cut(s) 245, 330, 354
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 297
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 76, 176, 214
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 4 cut(s) 26, 254, 260, 357
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 136, 247
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 7 cut(s) 135, 192, 206, 230, 233, 276, 289
Lsp1109I GCAGC 3 cut(s) 104, 186, 226
MabI ACCWGGT 1 cut(s) 219
MaeI CTAG 4 cut(s) 111, 155, 344, 348
MaeII ACGT 1 cut(s) 12
MalI GATC 2 cut(s) 138, 249
MboI GATC 2 cut(s) 136, 247
MboII GAAGA 2 cut(s) 39, 62
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 1 cut(s) 337
MslI CAYNNNNRTG 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 122, 221
Mva1269I GAATGC 2 cut(s) 43, 67
MvaI CCWGG 1 cut(s) 221
NciI CCSGG 1 cut(s) 122
NdeII GATC 2 cut(s) 136, 247
NlaIII CATG 4 cut(s) 26, 254, 260, 357
NlaIV GGNNCC 1 cut(s) 129
PagI TCATGA 1 cut(s) 353
PctI GAATGC 2 cut(s) 43, 67
PflMI CCANNNNNTGG 1 cut(s) 290
PkrI GCNGC 3 cut(s) 94, 201, 216
Ppu21I YACGTR 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 2 cut(s) 293, 306
PvuII CAGCTG 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 255
SatI GCNGC 3 cut(s) 93, 200, 215
Sau3AI GATC 2 cut(s) 136, 247
Sau96I GGNCC 2 cut(s) 293, 306
ScrFI CCNGG 2 cut(s) 122, 221
SduI GDGCHC 1 cut(s) 178
SetI ASST 8 cut(s) 15, 154, 184, 225, 231, 289, 322, 349
SexAI ACCWGGT 1 cut(s) 219
SinI GGWCC 2 cut(s) 293, 306
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 1 cut(s) 322
SspMI CTAG 4 cut(s) 111, 155, 344, 348
StyD4I CCNGG 2 cut(s) 120, 219
TaiI ACGT 1 cut(s) 15
TasI AATT 1 cut(s) 322
TseI GCWGC 3 cut(s) 92, 199, 214
TspDTI ATGAA 1 cut(s) 342
Van91I CCANNNNNTGG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 174
VpaK11BI GGWCC 2 cut(s) 293, 306
XspI CTAG 4 cut(s) 111, 155, 344, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.