Rh1DG042700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005526
Physical Location & Seq
Forward (+)
6835718 .. 6836038
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG042700.1

Sequence Viewer

Length: 321 bp
ATGCACACCTTCAGTCAGAAACCATGTTGCTTCTTCACCATCAAAGTTTTGATTTCTTTCTCAGTTTTGGCAGCCATAATATCAGCAACTAGAACTTACCCGGTGGCTCCAAATGGTCACAGAACACAAGGCCTAGGCGTTTTAGAGATGAGTGCACCAGCTGTGAACAACAGACTGCTGCTGTTAGATTTGCAGCACCAGATCAATGTGGAAGTGGCTTCTCAGGATCATGCTCATGTTATATCAAAGCGTCCTAAAATCCCACATTCTGGCCCAAGCCACAGGACCAACAAGACACCTAATTCCTCAAGACATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.67

Weight (kDa)

10.05

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AclWI GGATC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 269
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 153
AlwI GGATC 1 cut(s) 234
AoxI GGCC 2 cut(s) 130, 271
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 71, 178, 193
AspA2I CCTAGG 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 272, 285
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 285
AvrII CCTAGG 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 157
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 3 cut(s) 83, 165, 205
BccI CCATC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 2 cut(s) 90, 134
BisI GCNGC 3 cut(s) 72, 179, 194
BlnI CCTAGG 1 cut(s) 133
BlsI GCNGC 3 cut(s) 73, 180, 195
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 272, 285
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 75, 236
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 3 cut(s) 83, 165, 205
BshFI GGCC 2 cut(s) 132, 273
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 269
BsnI GGCC 2 cut(s) 132, 273
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 201, 226
BspANI GGCC 2 cut(s) 132, 273
BspCNI CTCAG 2 cut(s) 74, 235
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 201, 226
BssT1I CCWWGG 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 61, 222
BstKTI GATC 2 cut(s) 204, 229
BstMBI GATC 2 cut(s) 201, 226
BstSCI CCNGG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 83, 165, 205
BsuRI GGCC 2 cut(s) 132, 273
Cfr13I GGNCC 2 cut(s) 272, 285
CseI GACGC 1 cut(s) 239
CviAII CATG 3 cut(s) 24, 230, 236
CviJI RGCY 7 cut(s) 74, 107, 132, 161, 218, 273, 279
CviKI_1 RGCY 7 cut(s) 74, 107, 132, 161, 218, 273, 279
DdeI CTNAG 2 cut(s) 61, 222
DpnI GATC 2 cut(s) 203, 228
DpnII GATC 2 cut(s) 201, 226
Eco130I CCWWGG 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 27, 233, 239
FaiI YATR 5 cut(s) 25, 77, 231, 237, 242
FatI CATG 3 cut(s) 23, 229, 235
Fnu4HI GCNGC 3 cut(s) 72, 179, 194
Fsp4HI GCNGC 3 cut(s) 72, 179, 194
FspBI CTAG 2 cut(s) 90, 134
GluI GCNGC 3 cut(s) 72, 179, 194
HaeIII GGCC 2 cut(s) 132, 273
HapII CCGG 1 cut(s) 101
HgaI GACGC 1 cut(s) 239
Hin1II CATG 3 cut(s) 27, 233, 239
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 155, 166
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 2 cut(s) 224, 309
Hpy8I GTNNAC 2 cut(s) 155, 166
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 4, 155, 193
HpyF3I CTNAG 2 cut(s) 61, 222
Hsp92II CATG 3 cut(s) 27, 233, 239
Kzo9I GATC 2 cut(s) 201, 226
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 114, 171, 209, 212, 255, 268
Lsp1109I GCAGC 3 cut(s) 83, 165, 205
MaeI CTAG 2 cut(s) 90, 134
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 203, 228
MboI GATC 2 cut(s) 201, 226
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 1 cut(s) 301
MnlI CCTC 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 101
NciI CCSGG 1 cut(s) 101
NdeII GATC 2 cut(s) 201, 226
NlaIII CATG 3 cut(s) 27, 233, 239
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 116
PceI AGGCCT 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 3 cut(s) 73, 180, 195
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 2 cut(s) 272, 285
PvuII CAGCTG 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 234
SatI GCNGC 3 cut(s) 72, 179, 194
Sau3AI GATC 2 cut(s) 201, 226
Sau96I GGNCC 2 cut(s) 272, 285
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 157
SetI ASST 3 cut(s) 11, 163, 301
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 1 cut(s) 301
SseBI AGGCCT 1 cut(s) 132
SspMI CTAG 2 cut(s) 90, 134
StuI AGGCCT 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 133
TasI AATT 1 cut(s) 301
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 3 cut(s) 71, 178, 193
Tsp45I GTSAC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 269
VneI GTGCAC 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 285
XmaJI CCTAGG 1 cut(s) 133
XspI CTAG 2 cut(s) 90, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.