Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005526

Physical Location & Seq

Genomic Coordinates Reverse (-)

25708371 .. 25709830

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCTTCGTCGCCTCCTCCTTCTGGCTCTCCACCCCCAAGCTTCAGGGACTCTGGGCTGGACTTTCCAGACTTGTTCCAGAGCTTCAACAACGCTGATGCAGCACTGGGGTATGGGTTTACACCAAACCCAACTCCAATCACTGTTTCCAGCCCTCCAGTGATGCCGGATCAAACCACTCATTCATTGTCTCAGATTCTGGGTTGCTCTCTCAACATGGATATATTGGGTCCATCGCTGAAAAAGTCCATTGGGCCTCTGCTGATCACTGATGATGCTCCATTTCCTATGCCTGAACCATTTGATGGGACTTCTCTGCTGACAGACATTCAGCTGCTACAGCGCAACTTTGGGATTTTCAATGACGCTCTTGGAGTGATCAATAGCCAAGATGTGGTGGTGAAAAAGGTCGTTGAGATGAAGCTTTTGGTTCAGCTGAAGATAGGTGGGCTCTGGGCTAAAGGTGTGATTGTCCATCCCTGTGTGGAAGGCTCAGAAGAGGATGAGATCAAGAAACTCGGCAGTGACTATGGTATCACTGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.42

Weight (kDa)

4.45

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07280
pyrus_communis	pycom05g27410
rosa_chinensis	RchiOBHm_Chr1g0317771 RchiOBHm_Chr1g0317881 RchiOBHm_Chr2g0127981
rosa_laevigata	RLG00000028639 RLG00000028642 RLG00000028648 RLG00000028650 RLG00000028656 RLG00000028967 RLG00000030392 RLG00000030584 RLG00000031858
rosa_multiflora	Rmu_sc0001701.1_g000005 Rmu_sc0004705.1_g000039
rosa_roxburghii	Rroxscaffold_3G00235560 Rroxscaffold_4G00316520 Rroxscaffold_4G00327040
rosa_rugosa	Rorug01G0017500 Rorug05G0579300
rosa_samantha	Rh1BG179300 Rh1DG042700 Rh1DG043600 Rh1DG209400 Rh4DG110000 Rh5DG086000 Rh6CG034000
rosa_wichuraiana	Rw6G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	305, 394
AclWI	GGATC	1 cut(s)	177
AcuI	CTGAAG	2 cut(s)	28, 458
AfiI	CCNNNNNNNGG	3 cut(s)	23, 305, 394
AgsI	TTSAA	2 cut(s)	88, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	5 cut(s)	42, 84, 334, 424, 436
AluI	AGCT	5 cut(s)	42, 84, 334, 424, 436
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	2 cut(s)	101, 334
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	230, 254
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	230
BaeI	ACNNNNGTAYC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	113, 321
BccI	CCATC	3 cut(s)	241, 299, 483
BclI	TGATCA	2 cut(s)	264, 378
BcoDI	GTCTC	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	102, 335
BlsI	GCNGC	2 cut(s)	103, 336
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	230, 254
BmiI	GGNNCC	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	88, 153, 265
BmuI	ACTGGG	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 305, 394
Bse1I	ACTGG	3 cut(s)	111, 158, 544
BseGI	GGATG	2 cut(s)	475, 508
BseLI	CCNNNNNNNGG	3 cut(s)	23, 305, 394
BseMII	CTCAG	2 cut(s)	206, 507
BseNI	ACTGG	3 cut(s)	111, 158, 544
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	113, 321
BshFI	GGCC	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	62, 322
BslI	CCNNNNNNNGG	3 cut(s)	23, 305, 394
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	2 cut(s)	62, 322
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp143I	GATC	4 cut(s)	169, 264, 378, 507
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	205, 506
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	111, 158, 544
BssMI	GATC	4 cut(s)	169, 264, 378, 507
Bst4CI	ACNGT	2 cut(s)	145, 541
Bst6I	CTCTTC	1 cut(s)	492
BstDEI	CTNAG	2 cut(s)	192, 493
BstF5I	GGATG	2 cut(s)	475, 508
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	4 cut(s)	172, 267, 381, 510
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	4 cut(s)	169, 264, 378, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 340
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	113, 321
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	475, 508
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	6 cut(s)	104, 141, 165, 267, 529, 537
CaiI	CAGNNNCTG	1 cut(s)	199
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	230, 254
CseI	GACGC	1 cut(s)	374
CviAII	CATG	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	192, 493
DpnI	GATC	4 cut(s)	171, 266, 380, 509
DpnII	GATC	4 cut(s)	169, 264, 378, 507
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	28, 458
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	114, 218, 224, 290, 531
FaqI	GGGAC	2 cut(s)	62, 322
FatI	CATG	1 cut(s)	216
FbaI	TGATCA	2 cut(s)	264, 378
Fnu4HI	GCNGC	2 cut(s)	102, 335
FokI	GGATG	2 cut(s)	462, 515
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	102, 335
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	102, 335
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	40, 422
HinfI	GANTC	2 cut(s)	50, 196
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	195, 496
Hpy188III	TCNNGA	3 cut(s)	68, 79, 511
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	30, 482
HpyCH4III	ACNGT	2 cut(s)	145, 541
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 340
HpyF3I	CTNAG	2 cut(s)	192, 493
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	2 cut(s)	264, 378
Kzo9I	GATC	4 cut(s)	169, 264, 378, 507
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	2 cut(s)	113, 321
LweI	GCATC	3 cut(s)	88, 153, 265
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	4 cut(s)	171, 266, 380, 509
MboI	GATC	4 cut(s)	169, 264, 378, 507
MboII	GAAGA	2 cut(s)	451, 509
MhlI	GDGCHC	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	24, 27, 165, 267, 493
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	334, 436
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	101, 340
NdeII	GATC	4 cut(s)	169, 264, 378, 507
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	196
PflMI	CCANNNNNTGG	2 cut(s)	305, 394
PkrI	GCNGC	2 cut(s)	103, 336
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	230, 254
PstNI	CAGNNNCTG	1 cut(s)	199
PvuII	CAGCTG	2 cut(s)	334, 436
RseI	CAYNNNNRTG	1 cut(s)	480
SatI	GCNGC	2 cut(s)	102, 335
Sau3AI	GATC	4 cut(s)	169, 264, 378, 507
Sau96I	GGNCC	2 cut(s)	230, 254
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	8 cut(s)	44, 86, 336, 411, 426, 438, 448, 466
SfaNI	GCATC	3 cut(s)	88, 153, 265
SfcI	CTRYAG	1 cut(s)	338
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	145, 541
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	6 cut(s)	111, 148, 165, 274, 529, 544
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	2 cut(s)	101, 334
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	2 cut(s)	174, 434
TspRI	CASTG	6 cut(s)	111, 148, 165, 274, 529, 544
Van91I	CCANNNNNTGG	2 cut(s)	305, 394
VpaK11BI	GGWCC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.