Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005526

Physical Location & Seq

Genomic Coordinates Reverse (-)

25540059 .. 25542489

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATAAATTTGGTCCATCGCTGAAAAAGTCCATTGGGCCTTTGCTGATCACTGATGGTGCTCCCTTTCCATTTATTCCTGAACCATTTGATGGGGCTCCTCTGATCACAGACATCCAGATTCTACAGGGCAGCTTTAATATTTTCAATGAGGCTCTTGGGGTCATCAATGGCCAGGATGTGGTAGTGAAAAAGGTGGGTGACATGAAGCTTCTGGTTCAGCTTAAAATGGGTGGGCTTTGGACTAAAGGTGTGATTGTCCATCCTTGTGTGGAAGGCTCAGCTCTTGATGAGATCAAGAAACTCGGCAATGATTATGGAGAAGACAAGAAGAAGAAGCAGCAAAGAGTCATCAGGTTGGCGTCAACTCAAAACTTTGAAGGTGAAGGAGAAGATAATGTTGACTGGGAAGAGGCTCCAGTTGCAGGATTTTTCCCCTACTCATTTGACAAGGCCTCCTTTCTAATCCATACCCCAGAAACATTGAATATGGACAAGTATGATGGTGGAGATTCGTACGAGCAGAAAGCTGAGGAGAGTTCAGAGTTGATGAATAAAATAGGGGCAGAGCTTGAACTTGAACTTGAGAGGTTGGGGCTAAACATGAATACTTCTACTTTGGAGGGAAGATTAACTGATCTTGATGAGAACATGAGTTGTAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.53

Weight (kDa)

4.52

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07280
pyrus_communis	pycom05g27410
rosa_chinensis	RchiOBHm_Chr1g0317771 RchiOBHm_Chr1g0317881 RchiOBHm_Chr2g0127981
rosa_laevigata	RLG00000028639 RLG00000028642 RLG00000028648 RLG00000028650 RLG00000028656 RLG00000028967 RLG00000030392 RLG00000030584 RLG00000031858
rosa_multiflora	Rmu_sc0001701.1_g000005 Rmu_sc0004705.1_g000039
rosa_roxburghii	Rroxscaffold_3G00235560 Rroxscaffold_4G00316520 Rroxscaffold_4G00327040
rosa_rugosa	Rorug01G0017500 Rorug05G0579300
rosa_samantha	Rh1BG179300 Rh1DG042700 Rh1DG043600 Rh1DG209400 Rh4DG110000 Rh5DG086000 Rh6CG034000
rosa_wichuraiana	Rw6G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	92, 181
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	8
AcyI	GRCGYC	1 cut(s)	362
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	3 cut(s)	92, 181, 425
AgsI	TTSAA	5 cut(s)	148, 380, 487, 575, 581
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	6 cut(s)	135, 211, 223, 284, 530, 571
AluI	AGCT	6 cut(s)	135, 211, 223, 284, 530, 571
Alw21I	GWGCWC	1 cut(s)	64
AoxI	GGCC	3 cut(s)	38, 172, 453
ApeKI	GCWGC	2 cut(s)	132, 340
ApoI	RAATTY	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	14, 38
AsuHPI	GGTGA	2 cut(s)	212, 395
AvaII	GGWCC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	144, 352
BccI	CCATC	5 cut(s)	25, 50, 86, 270, 497
BciT130I	CCWGG	1 cut(s)	176
BclI	TGATCA	2 cut(s)	48, 105
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	133, 341
BlpI	GCTNAGC	1 cut(s)	280
BlsI	GCNGC	2 cut(s)	134, 342
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	14, 38
BmiI	GGNNCC	2 cut(s)	99, 417
BmrFI	CCNGG	1 cut(s)	176
BmrI	ACTGGG	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	531
Bpu1102I	GCTNAGC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	605
BsaHI	GRCGYC	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 181, 425
Bse1I	ACTGG	2 cut(s)	410, 419
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	176
BseGI	GGATG	3 cut(s)	114, 184, 262
BseLI	CCNNNNNNNGG	3 cut(s)	92, 181, 425
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	294, 522
BseNI	ACTGG	2 cut(s)	410, 419
BseRI	GAGGAG	2 cut(s)	90, 548
BseXI	GCAGC	2 cut(s)	144, 352
BshFI	GGCC	3 cut(s)	40, 174, 455
BsiHKAI	GWGCWC	1 cut(s)	64
BsiWI	CGTACG	1 cut(s)	516
BslI	CCNNNNNNNGG	3 cut(s)	92, 181, 425
BsnI	GGCC	3 cut(s)	40, 174, 455
Bsp1286I	GDGCHC	2 cut(s)	64, 100
Bsp143I	GATC	4 cut(s)	48, 105, 294, 637
Bsp1720I	GCTNAGC	1 cut(s)	280
BspANI	GGCC	3 cut(s)	40, 174, 455
BspCNI	CTCAG	2 cut(s)	293, 523
BspLI	GGNNCC	2 cut(s)	99, 417
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	410, 419
BssMI	GATC	4 cut(s)	48, 105, 294, 637
BssNI	GRCGYC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	280, 531
BstF5I	GGATG	3 cut(s)	114, 184, 262
BstKTI	GATC	4 cut(s)	51, 108, 297, 640
BstMBI	GATC	4 cut(s)	48, 105, 294, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	144, 352
BstV2I	GAAGAC	1 cut(s)	330
BsuRI	GGCC	3 cut(s)	40, 174, 455
BtgZI	GCGATG	1 cut(s)	3
BtsCI	GGATG	3 cut(s)	114, 184, 262
BtsIMutI	CAGTG	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	14, 38
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	3 cut(s)	205, 604, 652
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	280, 531
DpnI	GATC	4 cut(s)	50, 107, 296, 639
DpnII	GATC	4 cut(s)	48, 105, 294, 637
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco147I	AGGCCT	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	3 cut(s)	208, 607, 655
FaiI	YATR	7 cut(s)	206, 318, 471, 491, 501, 605, 653
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	3 cut(s)	204, 603, 651
FbaI	TGATCA	2 cut(s)	48, 105
Fnu4HI	GCNGC	2 cut(s)	133, 341
FokI	GGATG	3 cut(s)	101, 191, 249
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	133, 341
GluI	GCNGC	2 cut(s)	133, 341
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	40, 174, 455
HgaI	GACGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	208, 607, 655
HincII	GTYRAC	2 cut(s)	366, 403
HindII	GTYRAC	2 cut(s)	366, 403
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	121, 348, 512
HphI	GGTGA	2 cut(s)	212, 395
Hpy166II	GTNNAC	2 cut(s)	366, 403
Hpy188I	TCNGA	2 cut(s)	105, 544
Hpy188III	TCNNGA	5 cut(s)	80, 118, 287, 298, 641
Hpy8I	GTNNAC	2 cut(s)	366, 403
HpyAV	CCTTC	3 cut(s)	269, 374, 380
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	280, 531
Hsp92I	GRCGYC	1 cut(s)	362
Hsp92II	CATG	3 cut(s)	208, 607, 655
Ksp22I	TGATCA	2 cut(s)	48, 105
Kzo9I	GATC	4 cut(s)	48, 105, 294, 637
LmnI	GCTCC	3 cut(s)	67, 103, 421
Lsp1109I	GCAGC	2 cut(s)	144, 352
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	4 cut(s)	50, 107, 296, 639
MboI	GATC	4 cut(s)	48, 105, 294, 637
MboII	GAAGA	6 cut(s)	335, 343, 346, 404, 422, 639
MhlI	GDGCHC	2 cut(s)	64, 100
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	2 cut(s)	8, 661
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	111, 145, 406, 466, 526, 582, 616
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	3 cut(s)	138, 225, 632
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	4 cut(s)	48, 105, 294, 637
NlaIII	CATG	3 cut(s)	208, 607, 655
NlaIV	GGNNCC	2 cut(s)	99, 417
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	121, 512
Pfl23II	CGTACG	1 cut(s)	516
PflMI	CCANNNNNTGG	2 cut(s)	92, 181
PkrI	GCNGC	2 cut(s)	134, 342
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspLI	CGTACG	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	99, 417
PspPI	GGNCC	2 cut(s)	14, 38
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	138, 225, 632
SatI	GCNGC	2 cut(s)	133, 341
Sau3AI	GATC	4 cut(s)	48, 105, 294, 637
Sau96I	GGNCC	2 cut(s)	14, 38
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	64, 100
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	8, 661
SseBI	AGGCCT	1 cut(s)	455
SspI	AATATT	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	174
TasI	AATT	2 cut(s)	8, 661
TfiI	GAWTC	2 cut(s)	121, 512
Tru1I	TTAA	3 cut(s)	138, 225, 632
Tru9I	TTAA	3 cut(s)	138, 225, 632
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	132, 340
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	221, 566, 620
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	2 cut(s)	92, 181
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.