Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005526

Physical Location & Seq

Genomic Coordinates Forward (+)

30785969 .. 30789827

Gene Structure 3859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAACCTTACAAAGGAACAGCGTAGTGTGGTAAAGCAGAAGGCAGAGATAGATGGCACTTTAGCAGCTCCGCCGTATTCAGATGACAAAAAGGAAAATGCTGAAGATAATGGGAAGACTTTCCAGGATGAGTATTTGAAAGCTTATTACGCTGCTTTAATAAAAACAAGAAGAAGAAGCAGCAAAGAGTCGTCAGGTTGGCATGAAGTCAAAACTTTGAAGGTGAAGGAGAAGATAATGTTGACTGGGAAGAGGCTCCAGTTGCAGAATATGGACAAGAATGATGGTAGAGATTCGTATGAGCAGATAGCTGAGGGCAGTTCAGAGTCGATGAGTAAAATAGAGGCAGAGATTGAACTTGAACTTGAGAGGTTGGGGCTAAACATGAATACTGATCTTGAGGGAATACTAACTGATCTTGATGCGGTGGACTTTTTTGAGAAATTGTTAAATTTGGAAGAAATAGCCAAGGGAGTGGGCCAGACCCGGAAGCTGCCAGACAAGTCAGGCAAGCCCACCATATGCGTGCAGCTGCAAGGCGTGCTGCGTAGCAGCAGGACCAACCCAGCCCCGCAACCGGCGAAGCCAGTGCAGCAGCACAGCGAGCCTGAACTCGACGGCACAGCCGGCAGCGAGCATGCGTACACCCAGCCATCCCAAGCTGCTTCGCACCACTCTGCCATGCCTCAGAGACTAACTCCACCGACTCCATCAACAAGGAAAAATGATAAGGACACCCGGCCCAGGTGTATCTGCAAAACCCCAACCATTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_alpha

Protein Analysis

259

Amino Acids

28.81

Weight (kDa)

6.98

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07280
pyrus_communis	pycom05g27410
rosa_chinensis	RchiOBHm_Chr1g0317771 RchiOBHm_Chr1g0317881 RchiOBHm_Chr2g0127981
rosa_laevigata	RLG00000028639 RLG00000028642 RLG00000028648 RLG00000028650 RLG00000028656 RLG00000028967 RLG00000030392 RLG00000030584 RLG00000031858
rosa_multiflora	Rmu_sc0001701.1_g000005 Rmu_sc0004705.1_g000039
rosa_roxburghii	Rroxscaffold_3G00235560 Rroxscaffold_4G00316520 Rroxscaffold_4G00327040
rosa_rugosa	Rorug01G0017500 Rorug05G0579300
rosa_samantha	Rh1BG179300 Rh1DG042700 Rh1DG043600 Rh1DG209400 Rh4DG110000 Rh5DG086000 Rh6CG034000
rosa_wichuraiana	Rw6G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	71, 425, 572
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	3 cut(s)	13, 577, 744
AgsI	TTSAA	4 cut(s)	139, 220, 356, 362
AjnI	CCWGG	2 cut(s)	123, 743
AluBI	AGCT	6 cut(s)	68, 143, 311, 493, 532, 662
AluI	AGCT	6 cut(s)	68, 143, 311, 493, 532, 662
Alw26I	GTCTC	1 cut(s)	685
AoxI	GGCC	2 cut(s)	478, 740
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	478, 558, 741
AsuC2I	CCSGG	2 cut(s)	487, 739
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	122
BbvCI	CCTCAGC	1 cut(s)	312
BccI	CCATC	4 cut(s)	47, 278, 661, 718
BceAI	ACGGC	2 cut(s)	58, 634
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	2 cut(s)	125, 745
BcnI	CCSGG	2 cut(s)	487, 739
BcoDI	GTCTC	1 cut(s)	685
Bme1390I	CCNGG	4 cut(s)	125, 487, 739, 745
Bme18I	GGWCC	1 cut(s)	558
BmgT120I	GGNCC	3 cut(s)	478, 558, 741
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	4 cut(s)	125, 487, 739, 745
BmrI	ACTGGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	412
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	682, 714
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	386, 419
BpuMI	CCSGG	2 cut(s)	487, 739
BsaJI	CCNNGG	2 cut(s)	468, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 577, 744
Bse118I	RCCGGY	2 cut(s)	577, 626
Bse1I	ACTGG	3 cut(s)	250, 259, 587
BseBI	CCWGG	2 cut(s)	125, 745
BseDI	CCNNGG	2 cut(s)	468, 743
BseGI	GGATG	2 cut(s)	133, 653
BseLI	CCNNNNNNNGG	3 cut(s)	13, 577, 744
BseMII	CTCAG	2 cut(s)	303, 701
BseNI	ACTGG	3 cut(s)	250, 259, 587
BseYI	CCCAGC	2 cut(s)	565, 648
BsgI	GTGCAG	2 cut(s)	548, 611
BshFI	GGCC	2 cut(s)	480, 742
BsiSI	CCGG	4 cut(s)	487, 578, 627, 739
BslI	CCNNNNNNNGG	3 cut(s)	13, 577, 744
BsmAI	GTCTC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	480, 742
Bsp143I	GATC	2 cut(s)	394, 415
BspACI	CCGC	3 cut(s)	71, 425, 572
BspANI	GGCC	2 cut(s)	480, 742
BspCNI	CTCAG	2 cut(s)	304, 700
BspLI	GGNNCC	1 cut(s)	257
BsrFI	RCCGGY	2 cut(s)	577, 626
BsrI	ACTGG	3 cut(s)	250, 259, 587
BssAI	RCCGGY	2 cut(s)	577, 626
BssECI	CCNNGG	2 cut(s)	468, 743
BssMI	GATC	2 cut(s)	394, 415
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	2 cut(s)	125, 745
Bst6I	CTCTTC	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstC8I	GCNNGC	7 cut(s)	512, 527, 542, 605, 628, 635, 639
BstDEI	CTNAG	2 cut(s)	312, 687
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	133, 653
BstKTI	GATC	2 cut(s)	397, 418
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	2 cut(s)	394, 415
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 262, 541, 592, 604, 627
BstNI	CCWGG	2 cut(s)	125, 745
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	4 cut(s)	123, 485, 737, 743
BstV2I	GAAGAC	1 cut(s)	122
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	480, 742
BtsCI	GGATG	2 cut(s)	133, 653
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	7 cut(s)	512, 527, 542, 605, 628, 635, 639
Cfr10I	RCCGGY	2 cut(s)	577, 626
Cfr13I	GGNCC	3 cut(s)	478, 558, 741
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	4 cut(s)	203, 385, 638, 682
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	312, 687
DpnI	GATC	2 cut(s)	396, 417
DpnII	GATC	2 cut(s)	394, 415
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	558
Eco57I	CTGAAG	1 cut(s)	123
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	123, 743
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	4 cut(s)	206, 388, 641, 685
FaiI	YATR	8 cut(s)	204, 272, 300, 386, 521, 523, 639, 683
FatI	CATG	4 cut(s)	202, 384, 637, 681
FauI	CCCGC	1 cut(s)	579
FauNDI	CATATG	1 cut(s)	521
FokI	GGATG	2 cut(s)	140, 640
GsaI	CCCAGC	2 cut(s)	569, 652
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	480, 742
HapII	CCGG	4 cut(s)	487, 578, 627, 739
Hin1II	CATG	4 cut(s)	206, 388, 641, 685
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	4 cut(s)	188, 293, 326, 706
HpaII	CCGG	4 cut(s)	487, 578, 627, 739
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	243, 430, 645
Hpy188I	TCNGA	3 cut(s)	82, 325, 690
Hpy188III	TCNNGA	2 cut(s)	398, 419
Hpy8I	GTNNAC	3 cut(s)	243, 430, 645
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	3 cut(s)	34, 214, 220
HpyCH4V	TGCA	5 cut(s)	265, 529, 535, 592, 756
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 262, 541, 592, 604, 627
HpyF3I	CTNAG	2 cut(s)	312, 687
Hsp92II	CATG	4 cut(s)	206, 388, 641, 685
KroI	GCCGGC	1 cut(s)	626
KroNI	GCCGGC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	394, 415
LmnI	GCTCC	2 cut(s)	73, 261
LweI	GCATC	1 cut(s)	412
MalI	GATC	2 cut(s)	396, 417
MboI	GATC	2 cut(s)	394, 415
MboII	GAAGA	7 cut(s)	116, 127, 183, 186, 244, 262, 470
MluCI	AATT	2 cut(s)	443, 451
MlyI	GAGTC	3 cut(s)	197, 335, 700
MnlI	CCTC	6 cut(s)	246, 307, 337, 363, 394, 696
MroNI	GCCGGC	1 cut(s)	626
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	2 cut(s)	158, 449
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	532
MspI	CCGG	4 cut(s)	487, 578, 627, 739
MspR9I	CCNGG	4 cut(s)	125, 487, 739, 745
MvaI	CCWGG	2 cut(s)	125, 745
MwoI	GCNNNNNNNGC	6 cut(s)	149, 262, 541, 592, 604, 627
NaeI	GCCGGC	1 cut(s)	628
NciI	CCSGG	2 cut(s)	487, 739
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	2 cut(s)	394, 415
NgoMIV	GCCGGC	1 cut(s)	626
NlaIII	CATG	4 cut(s)	206, 388, 641, 685
NlaIV	GGNNCC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	641
PaeI	GCATGC	1 cut(s)	641
PdiI	GCCGGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	123
PleI	GAGTC	3 cut(s)	196, 334, 700
PpsI	GAGTC	3 cut(s)	196, 334, 700
Psp6I	CCWGG	2 cut(s)	123, 743
PspFI	CCCAGC	2 cut(s)	565, 648
PspGI	CCWGG	2 cut(s)	123, 743
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	3 cut(s)	478, 558, 741
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	158, 449
Sau3AI	GATC	2 cut(s)	394, 415
Sau96I	GGNCC	3 cut(s)	478, 558, 741
SchI	GAGTC	3 cut(s)	197, 335, 700
ScrFI	CCNGG	4 cut(s)	125, 487, 739, 745
SfaNI	GCATC	1 cut(s)	412
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	365, 398
SmoI	CTYRAG	2 cut(s)	365, 398
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	2 cut(s)	443, 451
SsiI	CCGC	3 cut(s)	71, 425, 572
StyD4I	CCNGG	4 cut(s)	123, 485, 737, 743
StyI	CCWWGG	1 cut(s)	468
TaqI	TCGA	2 cut(s)	329, 615
TasI	AATT	2 cut(s)	443, 451
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	158, 449
Tru9I	TTAA	2 cut(s)	158, 449
TscAI	CASTG	1 cut(s)	594
TspDTI	ATGAA	3 cut(s)	17, 219, 401
TspRI	CASTG	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	558
XagI	CCTNNNNNAGG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.