Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005526

Physical Location & Seq

Genomic Coordinates Forward (+)

6917219 .. 6917898

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTAGGGCATTTATACCTTGTATTGCTTCTTGCTTTTCTGGTTTATCACTTTTTTTCACAACTGCCATGTAACTTTTGGTTTCTGGCTTATCCTCACTTTCTTTTCAGCTACTTTGTATATGTAATTTTGCTGATGGAGTCTTCAACATCAGTGGTAACTCATTTCGTAGAAGAATATTTTGTAGACAATGTCTATTGGAAGCATGTTGTGCACCACATCAAAGCATGTAAGGTTGTACTGCATGGACATGCTGAGTTTGGGGCAAGTGATGTTATCATAAAGGTTATTGGTTGGAACATGGAAACACTACAGACTGAAAGCACACTGGAAGATCACATGATGATCGTTTCTGATGTTCGATTTAGAACAAATCTCCTGAATAGAATATGGACAAGTATGATGGTAGAGTTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

139

Amino Acids

16.47

Weight (kDa)

6.01

Isoelectric Point (pI)

20.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hexapep_UGP3_C	PF25441	62 - 95	5.4e-08	UGP3-like, C-terminal hexapeptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07280
pyrus_communis	pycom05g27410
rosa_chinensis	RchiOBHm_Chr1g0317771 RchiOBHm_Chr1g0317881 RchiOBHm_Chr2g0127981
rosa_laevigata	RLG00000028639 RLG00000028642 RLG00000028648 RLG00000028650 RLG00000028656 RLG00000028967 RLG00000030392 RLG00000030584 RLG00000031858
rosa_multiflora	Rmu_sc0001701.1_g000005 Rmu_sc0004705.1_g000039
rosa_roxburghii	Rroxscaffold_3G00235560 Rroxscaffold_4G00316520 Rroxscaffold_4G00327040
rosa_rugosa	Rorug01G0017500 Rorug05G0579300
rosa_samantha	Rh1BG179300 Rh1DG042700 Rh1DG043600 Rh1DG209400 Rh4DG110000 Rh5DG086000 Rh6CG034000
rosa_wichuraiana	Rw6G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AfaI	GTAC	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	147
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
Alw21I	GWGCWC	1 cut(s)	216
Alw44I	GTGCAC	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	216
BccI	CCATC	2 cut(s)	130, 397
BfmI	CTRYAG	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	333
BseSI	GKGCMC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	334, 345
BspCNI	CTCAG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	334, 345
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	255
BstKTI	GATC	2 cut(s)	337, 348
BstMBI	GATC	2 cut(s)	334, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNSI	RCATGY	3 cut(s)	209, 231, 254
BstSFI	CTRYAG	1 cut(s)	311
BstSLI	GKGCMC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	159, 326
Csp6I	GTAC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	135, 170
CviAII	CATG	7 cut(s)	69, 206, 228, 245, 251, 301, 340
CviJI	RGCY	2 cut(s)	89, 111
CviKI_1	RGCY	2 cut(s)	89, 111
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	336, 347
DpnII	GATC	2 cut(s)	334, 345
FaeI	CATG	7 cut(s)	72, 209, 231, 248, 254, 304, 343
FatI	CATG	7 cut(s)	68, 205, 227, 244, 250, 300, 339
FblI	GTMKAC	1 cut(s)	186
Hin1II	CATG	7 cut(s)	72, 209, 231, 248, 254, 304, 343
HinfI	GANTC	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	187, 214
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	187, 214
HpyCH4V	TGCA	2 cut(s)	214, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	7 cut(s)	72, 209, 231, 248, 254, 304, 343
Kzo9I	GATC	2 cut(s)	334, 345
LpnPI	CCDG	4 cut(s)	26, 71, 314, 392
MaeIII	GTNAC	2 cut(s)	71, 157
MalI	GATC	2 cut(s)	336, 347
MboI	GATC	2 cut(s)	334, 345
MboII	GAAGA	3 cut(s)	135, 185, 344
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	2 cut(s)	334, 345
NlaIII	CATG	7 cut(s)	72, 209, 231, 248, 254, 304, 343
NspI	RCATGY	3 cut(s)	209, 231, 254
PflFI	GACNNNGTC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	191
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	334, 345
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	4 cut(s)	21, 113, 237, 288
SfcI	CTRYAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	126
SspI	AATATT	1 cut(s)	179
TaqI	TCGA	1 cut(s)	361
TasI	AATT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	238
TscAI	CASTG	2 cut(s)	159, 333
TspRI	CASTG	2 cut(s)	159, 333
Tth111I	GACNNNGTC	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	212
XceI	RCATGY	3 cut(s)	209, 231, 254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.