Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001701.1

Orthogroup ID

OG0005526

Physical Location & Seq

Genomic Coordinates Forward (+)

35858 .. 36277

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001701.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtcacaaactgtattgcaggtaaaggtacaaacttgggtagatggtgttgaggctagtgagtttgttggtgtgggtgctagatttggaactaccattgaatcaaaagagaataaggcaaaccaaattcaccttatactttcaaaccctcgagattgctgcagtccaccgaaaaataagattgctcgggatgtcattatggtcgacagaggcaactgtaaattgagtttaactttggtcgaagaggccactttttcttcttggctgaagagtcggccgaatcagtttttaaggaccaaaatgatgtttgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

104

Amino Acids

11.72

Weight (kDa)

8.93

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07280
pyrus_communis	pycom05g27410
rosa_chinensis	RchiOBHm_Chr1g0317771 RchiOBHm_Chr1g0317881 RchiOBHm_Chr2g0127981
rosa_laevigata	RLG00000028639 RLG00000028642 RLG00000028648 RLG00000028650 RLG00000028656 RLG00000028967 RLG00000030392 RLG00000030584 RLG00000031858
rosa_multiflora	Rmu_sc0001701.1_g000005 Rmu_sc0004705.1_g000039
rosa_roxburghii	Rroxscaffold_3G00235560 Rroxscaffold_4G00316520 Rroxscaffold_4G00327040
rosa_rugosa	Rorug01G0017500 Rorug05G0579300
rosa_samantha	Rh1BG179300 Rh1DG042700 Rh1DG043600 Rh1DG209400 Rh4DG110000 Rh5DG086000 Rh6CG034000
rosa_wichuraiana	Rw6G029660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	101, 144
Ama87I	CYCGRG	2 cut(s)	150, 186
AoxI	GGCC	2 cut(s)	246, 275
ApeKI	GCWGC	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	2 cut(s)	150, 186
AvaII	GGWCC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	141, 175
BfaI	CTAG	3 cut(s)	57, 81, 313
BfmI	CTRYAG	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	2 cut(s)	150, 186
BmgT120I	GGNCC	1 cut(s)	294
BseGI	GGATG	1 cut(s)	196
BseX3I	CGGCCG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	2 cut(s)	248, 277
BsiEI	CGRYCG	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	150, 186
BsnI	GGCC	2 cut(s)	248, 277
BsoBI	CYCGRG	2 cut(s)	150, 186
BspANI	GGCC	2 cut(s)	248, 277
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	13, 218
Bst6I	CTCTTC	2 cut(s)	237, 263
BstF5I	GGATG	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	146
BstZI	CGGCCG	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	248, 277
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	29
CviJI	RGCY	4 cut(s)	56, 248, 265, 277
CviKI_1	RGCY	4 cut(s)	56, 248, 265, 277
CviQI	GTAC	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	275
EagI	CGGCCG	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	237, 263
EarI	CTCTTC	2 cut(s)	237, 263
EclXI	CGGCCG	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	150, 186
FaiI	YATR	2 cut(s)	137, 200
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	3 cut(s)	57, 81, 313
GluI	GCNGC	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	248, 277
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	101, 271, 280
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	167, 205
Hpy188III	TCNNGA	2 cut(s)	152, 188
Hpy8I	GTNNAC	2 cut(s)	167, 205
HpyCH4III	ACNGT	2 cut(s)	13, 218
HpyCH4V	TGCA	2 cut(s)	19, 162
LpnPI	CCDG	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	146
MaeI	CTAG	3 cut(s)	57, 81, 313
MaeIII	GTNAC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	249, 254, 280
MluCI	AATT	2 cut(s)	126, 221
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	4 cut(s)	46, 159, 203, 238
MseI	TTAA	2 cut(s)	230, 290
NmuCI	GTSAC	1 cut(s)	3
PaeR7I	CTCGAG	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	101, 280
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	230, 290
SatI	GCNGC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	280
SetI	ASST	3 cut(s)	24, 30, 135
SfcI	CTRYAG	1 cut(s)	160
Sfr274I	CTCGAG	1 cut(s)	150
SgeI	CNNG	9 cut(s)	32, 48, 69, 93, 162, 164, 198, 200, 273
SinI	GGWCC	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	126, 221
SspMI	CTAG	3 cut(s)	57, 81, 313
TaaI	ACNGT	2 cut(s)	13, 218
TaqI	TCGA	3 cut(s)	151, 204, 240
TasI	AATT	2 cut(s)	126, 221
TfiI	GAWTC	2 cut(s)	101, 280
Tru1I	TTAA	2 cut(s)	230, 290
Tru9I	TTAA	2 cut(s)	230, 290
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	3
VpaK11BI	GGWCC	1 cut(s)	294
XapI	RAATTY	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	3 cut(s)	57, 81, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.